BioContainers: An open-source and community-driven framework for software standardization

Bioinformatics

Volumn 33, Issue 16, 2017, Pages 2580-2582

  Da Veiga Leprevost, Felipe ^a   Grüning, Björn A ^b   Alves Aflitos, Saulo ^c   Röst, Hannes L ^d   Uszkoreit, Julian ^e   Barsnes, Harald ^f   Vaudel, Marc ^f   Moreno, Pablo ^g   Gatto, Laurent ^h   Weber, Jonas ^b   Bai, Mingze ^g   Jimenez, Rafael C ^g   Sachsenberg, Timo ⁱ   Pfeuffer, Julianus ⁱ   Vera Alvarez, Roberto ^j   Griss, Johannes ^g,k   Nesvizhskii, Alexey I ^a   Perez Riverol, Yasset ^g  

^a UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^b UNIVERSITY OF FREIBURG   (Germany)

^c WAGENINGEN UNIVERSITY   (Netherlands)

^d STANFORD UNIVERSITY   (United States)

^e RUHR UNIVERSITY BOCHUM   (Germany)

^f UNIVERSITY OF BERGEN   (Norway)

^g EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^h UNIVERSITY OF CAMBRIDGE   (United Kingdom)

ⁱ UNIVERSITY OF TÜBINGEN   (Germany)

^j NATIONAL INSTITUTES OF HEALTH   (United States)

^k MEDICAL UNIVERSITY OF VIENNA   (Austria)

more..

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGY; GENOMICS; METABOLOMICS; PROCEDURES; PROTEOMICS; SOFTWARE;

COMPUTATIONAL BIOLOGY; GENOMICS; METABOLOMICS; PROTEOMICS; SOFTWARE;

EID: 85030129924     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btx192     Document Type: Article

References (7)

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2. Belmann,P. et al. (2015) Bioboxes: standardised containers for interchangeable bioinformatics software. GigaScience, 4
3. Leprevost,F. d V. et al. (2014) On best practices in the development of bioinformatics software. Bioinf. Comput. Biol., 5, 199
4. Moreews,F. et al. (2015) BioShaDock: A community driven bioinformatics shared Docker-based tools registry. F1000Research, 4, 1443
5. Perez-Riverol,Y. et al. (2014) Open source libraries and frameworks for mass spectrometry based proteomics: A developer's perspective. Biochim. Biophys. Acta (BBA) Proteins Proteomics, 1844, 63-76
6. Rö st,H.L. et al. (2016) OpenMS: A flexible open-source software platform for mass spectrometry data analysis. Nat. Methods, 13, 741-748
7. Wolstencroft,K. et al. (2013) The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud. Nucleic Acids Res., 41, W557-W561.