-
1
-
-
80053281919
-
Open science is a research accelerator
-
21941234
-
Woelfle M Olliaro P Todd MH: Open science is a research accelerator. Nat Chem. 2011;3(10):745-748. 21941234 10.1038/nchem.1149
-
(2011)
Nat Chem
, vol.3
, Issue.10
, pp. 745-748
-
-
Woelfle, M.1
Olliaro, P.2
Todd, M.H.3
-
2
-
-
33748796893
-
Open source tools and toolkits for bioinformatics: significance, and where are we?
-
16899494
-
Stajich JE Lapp H: Open source tools and toolkits for bioinformatics: significance, and where are we? Brief Bioinform. 2006;7(3):287-296. 16899494 10.1093/bib/bbl026
-
(2006)
Brief Bioinform
, vol.7
, Issue.3
, pp. 287-296
-
-
Stajich, J.E.1
Lapp, H.2
-
3
-
-
84976872277
-
Tools and data services registry: a community effort to document bioinformatics resources
-
26538599 pii: gkv1116.
-
Ison J Rapacki K Ménager H: Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Res. 2015; pii: gkv1116. 26538599 10.1093/nar/gkv1116
-
(2015)
Nucleic Acids Res
-
-
Ison, J.1
Rapacki, K.2
Ménager, H.3
-
4
-
-
84970942641
-
ELIXIR Tools and Data Services Registry
-
Reference Source
-
Connor BO Kartashov A Yuen D: ELIXIR Tools and Data Services Registry.2015. Reference Source
-
(2015)
-
-
Connor, B.O.1
Kartashov, A.2
Yuen, D.3
-
5
-
-
77955801615
-
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
20738864, 2945788
-
Goecks J Nekrutenko A Taylor J: Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 2010;11(8):R86. 20738864 10.1186/gb-2010-11-8-r86 2945788
-
(2010)
Genome Biol
, vol.11
, Issue.8
, pp. R86
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
6
-
-
84970946458
-
Merging OpenLifeData with SADI services using Galaxy and Docker
-
Aranguren ME: Merging OpenLifeData with SADI services using Galaxy and Docker. BioRxiv, Cold Spring Harbor Labs. 2015. 10.1101/013615
-
(2015)
BioRxiv, Cold Spring Harbor Labs
-
-
Aranguren, M.E.1
-
7
-
-
84896733455
-
Dissemination of scientific software with Galaxy ToolShed
-
25001293, 4038738
-
Blankenberg D Von Kuster G Bouvier E: Dissemination of scientific software with Galaxy ToolShed. Genome Biol. 2014;15(2):403. 25001293 10.1186/gb4161 4038738
-
(2014)
Genome Biol
, vol.15
, Issue.2
, pp. 403
-
-
Blankenberg, D.1
Von Kuster, G.2
Bouvier, E.3
-
8
-
-
84948155696
-
Engineering bioinformatics: building reliability, performance and productivity into bioinformatics software
-
25996054, 4601517
-
Lawlor B Walsh P: Engineering bioinformatics: building reliability, performance and productivity into bioinformatics software. Bioengineered. 2015;6(4):193-203. 25996054 10.1080/21655979.2015.1050162 4601517
-
(2015)
Bioengineered
, vol.6
, Issue.4
, pp. 193-203
-
-
Lawlor, B.1
Walsh, P.2
-
9
-
-
84941352959
-
Toward effective software solutions for big biology
-
26154002
-
Prins P de Ligt J Tarasov A: Toward effective software solutions for big biology. Nat Biotechnol. 2015;33(7):686-687. 26154002 10.1038/nbt.3240
-
(2015)
Nat Biotechnol
, vol.33
, Issue.7
, pp. 686-687
-
-
Prins, P.1
de Ligt, J.2
Tarasov, A.3
-
10
-
-
79958288222
-
SHARE: a web portal for creating and sharing executable research papers
-
Van Gorp P Mazanek S: SHARE: a web portal for creating and sharing executable research papers. Procedia Comput Sci. 2011;4:589-597. 10.1016/j.procs.2011.04.062
-
(2011)
Procedia Comput Sci
, vol.4
, pp. 589-597
-
-
Van Gorp, P.1
Mazanek, S.2
-
11
-
-
84971002664
-
Jupyter: Open source, interactive data science and scientific computing across over 40 programming languages
-
Reference Source
-
Granger B Avila D Perez F: Jupyter: Open source, interactive data science and scientific computing across over 40 programming languages.2015. Reference Source
-
(2015)
-
-
Granger, B.1
Avila, D.2
Perez, F.3
-
12
-
-
85027955396
-
PyPedia: using the wiki paradigm as crowd sourcing environment for bioinformatics protocols
-
26587054, 4652372
-
Kanterakis A Kuiper J Potamias G: PyPedia: using the wiki paradigm as crowd sourcing environment for bioinformatics protocols. Source Code Biol Med. 2015;10(1):14. 26587054 10.1186/s13029-015-0042-6 4652372
-
(2015)
Source Code Biol Med
, vol.10
, Issue.1
, pp. 14
-
-
Kanterakis, A.1
Kuiper, J.2
Potamias, G.3
-
13
-
-
84926444656
-
Docker: Lightweight Linux containers for consistent development and deployment
-
Reference Source
-
Merkel D: Docker: Lightweight Linux containers for consistent development and deployment. Linux J. 2014; (239). Reference Source
-
(2014)
Linux J
, Issue.239
-
-
Merkel, D.1
-
14
-
-
84970966195
-
Docker
-
Reference Source
-
Docker.2013; [Online; accessed 16-Nov-2015]. Reference Source
-
(2013)
-
-
-
15
-
-
84970946455
-
Google Container Engine
-
google Inc, Reference Source
-
google Inc: Google Container Engine.2015. Reference Source
-
(2015)
-
-
-
16
-
-
84970968232
-
GO-Docker: Batch scheduling with containers
-
IEEE Cluster 2015, Reference Source
-
Sallou O Monjeaud C: GO-Docker: Batch scheduling with containers. IEEE Cluster 2015.2015. Reference Source
-
(2015)
-
-
Sallou, O.1
Monjeaud, C.2
-
17
-
-
84944903287
-
The impact of Docker containers on the performance of genomic pipelines
-
26421241, 4586803
-
Di Tommaso P Palumbo E Chatzou M: The impact of Docker containers on the performance of genomic pipelines. PeerJ. 2015;3:e1273. 26421241 10.7717/peerj.1273 4586803
-
(2015)
PeerJ
, vol.3
, pp. e1273
-
-
Di Tommaso, P.1
Palumbo, E.2
Chatzou, M.3
-
18
-
-
84878001133
-
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats
-
23479348, 3654706
-
Ison J Kalas M Jonassen I: EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats. Bioinformatics. 2013;29(10):1325-1332. 23479348 10.1093/bioinformatics/btt113 3654706
-
(2013)
Bioinformatics
, vol.29
, Issue.10
, pp. 1325-1332
-
-
Ison, J.1
Kalas, M.2
Jonassen, I.3
-
19
-
-
84970942320
-
Beyond Galaxy: portable workflows and tool definitions with the CWL
-
Galaxy Community Conference 2015, Reference Source, In
-
Peter A Nebojsa T Stian SR: Beyond Galaxy: portable workflows and tool definitions with the CWL. In Galaxy Community Conference 2015. Norwich, United Kingdom,2015. Reference Source
-
(2015)
-
-
Peter, A.1
Nebojsa, T.2
Stian, S.R.3
-
21
-
-
84971015450
-
Arvados
-
Reference Source
-
Arvados.2015. Reference Source
-
(2015)
-
-
-
22
-
-
84971015444
-
Rabix
-
Reference Source
-
Rabix.2015. Reference Source
-
(2015)
-
-
-
23
-
-
84970978370
-
D4 Workflow Portal
-
Reference Source
-
Francois M: D4 Workflow Portal.2015. Reference Source
-
(2015)
-
-
Francois, M.1
-
24
-
-
84971009815
-
The academic cloud of the French Institute of Bioinformatics
-
IFB cloud, Reference Source
-
IFB cloud: The academic cloud of the French Institute of Bioinformatics. Online; accessed 2015-09-24. Reference Source
-
-
-
-
25
-
-
84970968234
-
A curated Domain centric shared Docker registry linked to the Galaxy toolshed
-
Galaxy Community Conference 2015, Reference Source, In
-
Moreews F Sallou O Bras YL: A curated Domain centric shared Docker registry linked to the Galaxy toolshed. In Galaxy Community Conference 2015. Norwich, United Kingdom,2015. Reference Source
-
(2015)
-
-
Moreews, F.1
Sallou, O.2
Bras, Y.L.3
-
26
-
-
84970978377
-
GUGGO Galaxy ToolShed
-
Reference Source, [Online; accessed 05-Nov-2015].
-
Bras YL Monjeau C: GUGGO Galaxy ToolShed.2014. [Online; accessed 05-Nov-2015]. Reference Source
-
(2014)
-
-
Bras, Y.L.1
Monjeau, C.2
-
27
-
-
84971002681
-
STACKS, a software pipeline for building loci from short-read sequence
-
Reference Source, [Online; accessed 02-Dec-2015].
-
Catchen J Amores A Hohenlohe P: STACKS, a software pipeline for building loci from short-read sequence.2010. [Online; accessed 02-Dec-2015]. Reference Source
-
(2010)
-
-
Catchen, J.1
Amores, A.2
Hohenlohe, P.3
-
28
-
-
84970982999
-
STACKS pipeline, galaxy tool descriptor
-
Reference Source, [Online; accessed 02-Dec-2015].
-
Bras YL Monjeaud C: STACKS pipeline, galaxy tool descriptor.2010. [Online; accessed 02-Dec-2015]. Reference Source
-
(2010)
-
-
Bras, Y.L.1
Monjeaud, C.2
-
29
-
-
84970982999
-
STACKS pipeline, docker container
-
Reference Source, [Online; accessed 02-Dec-2015].
-
Bras YL Monjeaud C: STACKS pipeline, docker container.2010. [Online; accessed 02-Dec-2015]. Reference Source
-
(2010)
-
-
Bras, Y.L.1
Monjeaud, C.2
-
30
-
-
84970946413
-
BioDocker
-
Reference Source
-
BioDocker.2015. Reference Source
-
(2015)
-
-
-
31
-
-
84979503019
-
Bioboxes: standardised containers for interchangeable bioinformatics software
-
26473029, 4607242
-
Belmann P Dröge J Bremges A: Bioboxes: standardised containers for interchangeable bioinformatics software. Gigascience. 2015;4:47. 26473029 10.1186/s13742-015-0087-0 4607242
-
(2015)
Gigascience
, vol.4
, pp. 47
-
-
Belmann, P.1
Dröge, J.2
Bremges, A.3
-
33
-
-
84971009814
-
Design and share data analysis workflows. Application to bioinformatics intensive treatments
-
Thesis, université de rennes 1.
-
Moreews F: Design and share data analysis workflows. Application to bioinformatics intensive treatments. Thesis, université de rennes 1.2015.
-
(2015)
-
-
Moreews, F.1
|