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Volumn 8, Issue AUG, 2017, Pages

Efficacy analysis of combinatorial siRNAs against HIV derived from one double hairpin RNA precursor

Author keywords

Escaping mutation; Gene therapy; HIV; Long term inhibition; RNAi

Indexed keywords


EID: 85028473461     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2017.01651     Document Type: Article
Times cited : (12)

References (32)
  • 1
    • 79953117041 scopus 로고    scopus 로고
    • Evidence for the cure of HIV infection by CCR5Delta32/Delta32 stem cell transplantation
    • Allers, K., Hutter, G., Hofmann, J., Loddenkemper, C., Rieger, K., Thiel, E., et al. (2011). Evidence for the cure of HIV infection by CCR5Delta32/Delta32 stem cell transplantation. Blood 117, 2791–2799. doi: 10.1182/blood-2010-09-309591
    • (2011) Blood , vol.117 , pp. 2791-2799
    • Allers, K.1    Hutter, G.2    Hofmann, J.3    Loddenkemper, C.4    Rieger, K.5    Thiel, E.6
  • 2
    • 85015391748 scopus 로고    scopus 로고
    • HIV-1 escape from RNAi antivirals: Yet another Houdini action
    • Berkhout, B., and Das, A. T. (2012). HIV-1 escape from RNAi antivirals: Yet another Houdini action? Mol. Ther. Nucleic Acids. 1, e26. doi: 10.1038/mtna.2012.22
    • (2012) Mol. Ther. Nucleic Acids. , vol.1
    • Berkhout, B.1    Das, A.T.2
  • 3
    • 0037134020 scopus 로고    scopus 로고
    • A system for stable expression of short interfering RNAs in mammalian cells
    • Brummelkamp, T. R., Bernards, R., and Agami, R. (2002). A system for stable expression of short interfering RNAs in mammalian cells. Science 296, 550–553. doi: 10.1126/science.1068999
    • (2002) Science , vol.296 , pp. 550-553
    • Brummelkamp, T.R.1    Bernards, R.2    Agami, R.3
  • 4
    • 0036847965 scopus 로고    scopus 로고
    • Functional siRNA expression from transfected PCR products
    • Castanotto, D., Li, H., and Rossi, J. J. (2002). Functional siRNA expression from transfected PCR products. RNA 8, 1454–1460. doi: 10.1017/S1355838202021362
    • (2002) RNA , vol.8 , pp. 1454-1460
    • Castanotto, D.1    Li, H.2    Rossi, J.J.3
  • 6
    • 84922224353 scopus 로고    scopus 로고
    • Multiplexing seven miRNA-Based shRNAs to suppress HIV replication
    • Choi, J. G., Bharaj, P., Abraham, S., Ma, H., Yi, G., Ye, C., et al. (2015). Multiplexing seven miRNA-Based shRNAs to suppress HIV replication. Mol. Ther. 23, 310–320. doi: 10.1038/mt.2014.205
    • (2015) Mol. Ther. , vol.23 , pp. 310-320
    • Choi, J.G.1    Bharaj, P.2    Abraham, S.3    Ma, H.4    Yi, G.5    Ye, C.6
  • 7
    • 84893909299 scopus 로고    scopus 로고
    • Therapeutic potentials of gene silencing by RNA interference: principles, challenges, and new strategies
    • Deng, Y., Wang, C. C., Choy, K. W., Du, Q., Chen, J., Wang, Q., et al. (2014). Therapeutic potentials of gene silencing by RNA interference: principles, challenges, and new strategies. Gene 538, 217–227. doi: 10.1016/j.gene.2013.12.019
    • (2014) Gene , vol.538 , pp. 217-227
    • Deng, Y.1    Wang, C.C.2    Choy, K.W.3    Du, Q.4    Chen, J.5    Wang, Q.6
  • 8
    • 36849042601 scopus 로고    scopus 로고
    • RNA interference against viruses: strike and counterstrike
    • Haasnoot, J., Westerhout, E. M., and Berkhout, B. (2007). RNA interference against viruses: strike and counterstrike. Nat. Biotechnol. 25, 1435–1443. doi: 10.1038/ nbt1369
    • (2007) Nat. Biotechnol. , vol.25 , pp. 1435-1443
    • Haasnoot, J.1    Westerhout, E.M.2    Berkhout, B.3
  • 9
    • 60549090253 scopus 로고    scopus 로고
    • Long-term control of HIV by CCR5 Delta32/Delta32 stem-cell transplantation
    • Hutter, G., Nowak, D., Mossner, M., Ganepola, S., Mussig, A., Allers, K., et al. (2009). Long-term control of HIV by CCR5 Delta32/Delta32 stem-cell transplantation. N. Engl. J. Med. 360, 692–698. doi: 10.1056/NEJMoa0802905
    • (2009) N. Engl. J. Med. , vol.360 , pp. 692-698
    • Hutter, G.1    Nowak, D.2    Mossner, M.3    Ganepola, S.4    Mussig, A.5    Allers, K.6
  • 10
    • 56449120521 scopus 로고    scopus 로고
    • The human immunodeficiency virus type 1 envelope confers higher rates ofreplicative fitness to perinatally transmitted viruses than to nontransmitted viruses
    • Kong, X., West, J. T., Zhang, H., Shea, D. M., M'Soka, T. J., and Wood, C. (2008). The human immunodeficiency virus type 1 envelope confers higher rates ofreplicative fitness to perinatally transmitted viruses than to nontransmitted viruses. J. Virol. 82, 11609–11618. doi: 10.1128/JVI.00952-08
    • (2008) J. Virol. , vol.82 , pp. 11609-11618
    • Kong, X.1    West, J.T.2    Zhang, H.3    Shea, D.M.4    M'Soka, T.J.5    Wood, C.6
  • 11
    • 13744250051 scopus 로고    scopus 로고
    • Computational design of antiviral RNA interference strategies that resist human immunodeficiency virus escape
    • Leonard, J. N., and Schaffer, D. V. (2005). Computational design of antiviral RNA interference strategies that resist human immunodeficiency virus escape. J. Virol. 79, 1645–1654. doi: 10.1128/JVI.79.3.1645-1654.2005
    • (2005) J. Virol. , vol.79 , pp. 1645-1654
    • Leonard, J.N.1    Schaffer, D.V.2
  • 12
    • 84875215908 scopus 로고    scopus 로고
    • Two retroviruses packaged in one cell line can combined inhibit the replication of HIV-1 in TZM-bl cells
    • Liang, Z., Guo, Z., Wang, X., Kong, X., and Liu, C. (2012). Two retroviruses packaged in one cell line can combined inhibit the replication of HIV-1 in TZM-bl cells. Virol. Sin. 27, 339–344. doi: 10.1007/s12250-012-3263-8
    • (2012) Virol. Sin. , vol.27 , pp. 339-344
    • Liang, Z.1    Guo, Z.2    Wang, X.3    Kong, X.4    Liu, C.5
  • 13
    • 34848814237 scopus 로고    scopus 로고
    • Design of extended short hairpin RNAs for HIV-1 inhibition
    • Liu, Y. P., Haasnoot, J., and Berkhout, B. (2007). Design of extended short hairpin RNAs for HIV-1 inhibition. Nucleic Acids Res. 35, 5683–5693. doi: 10.1093/nar/gkm596
    • (2007) Nucleic Acids Res. , vol.35 , pp. 5683-5693
    • Liu, Y.P.1    Haasnoot, J.2    Berkhout, B.3
  • 14
  • 15
    • 84979544804 scopus 로고    scopus 로고
    • Latency reversal and viral clearance to cure HIV-1
    • Margolis, D. M., Garcia, J. V., Hazuda, D. J., and Haynes, B. F. (2016). Latency reversal and viral clearance to cure HIV-1. Science 353:aaf6517. doi: 10.1126/ science.aaf6517
    • (2016) Science , vol.353
    • Margolis, D.M.1    Garcia, J.V.2    Hazuda, D.J.3    Haynes, B.F.4
  • 17
    • 4644223259 scopus 로고    scopus 로고
    • Mechanisms of gene silencing by double-stranded RNA
    • Meister, G., and Tuschl, T. (2004). Mechanisms of gene silencing by double-stranded RNA. Nature 431, 343–349. doi: 10.1038/nature02873
    • (2004) Nature , vol.431 , pp. 343-349
    • Meister, G.1    Tuschl, T.2
  • 19
    • 38349166714 scopus 로고    scopus 로고
    • Optimal design and validation of antiviral siRNA for targeting HIV-1
    • Naito, Y., Nohtomi, K., Onogi, T., Uenishi, R., Ui-Tei, K., Saigo, K., et al. (2007). Optimal design and validation of antiviral siRNA for targeting HIV-1. Retrovirology 4:80. doi: 10.1186/1742-4690-4-80
    • (2007) Retrovirology , vol.4 , pp. 80
    • Naito, Y.1    Nohtomi, K.2    Onogi, T.3    Uenishi, R.4    Ui-Tei, K.5    Saigo, K.6
  • 20
    • 0037089589 scopus 로고    scopus 로고
    • Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells
    • Paddison, P. J., Caudy, A. A., Bernstein, E., Hannon, G. J., and Conklin, D. S. (2002). Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells. Genes Dev. 16, 948–958. doi: 10.1101/gad.981002
    • (2002) Genes Dev. , vol.16 , pp. 948-958
    • Paddison, P.J.1    Caudy, A.A.2    Bernstein, E.3    Hannon, G.J.4    Conklin, D.S.5
  • 21
    • 84897965706 scopus 로고    scopus 로고
    • HIV cure research: advances and prospects
    • Passaes, C. P., and Saez-Cirion, A. (2014). HIV cure research: advances and prospects. Virology 45, 340–352. doi: 10.1016/j.virol.2014.02.021
    • (2014) Virology , vol.45 , pp. 340-352
    • Passaes, C.P.1    Saez-Cirion, A.2
  • 22
    • 84881262655 scopus 로고    scopus 로고
    • HIV drug resistance: problems and perspectives
    • Pennings, P. S. (2013). HIV drug resistance: problems and perspectives. Infect Dis. Rep. 5(Suppl. 1):e5. doi: 10.4081/idr.2013.s1.e5
    • (2013) Infect Dis. Rep. , vol.5
    • Pennings, P.S.1
  • 23
    • 84879146816 scopus 로고    scopus 로고
    • Gene therapy briefs
    • Philippidis, A. (2013). Gene therapy briefs. Hum. Gene Ther. 24, 565–567. doi: 10.1089/hum.2013.250
    • (2013) Hum. Gene Ther. , vol.24 , pp. 565-567
    • Philippidis, A.1
  • 24
    • 0344668868 scopus 로고    scopus 로고
    • Nucleotide sequence homology requirements of HIV-1-specific short hairpin RNA
    • Pusch, O., Boden, D., Silbermann, R., Lee, F., Tucker, L., and Ramratnam, B. (2003). Nucleotide sequence homology requirements of HIV-1-specific short hairpin RNA. Nucleic Acids Res. 31, 6444–6449. doi: 10.1093/nar/gkg876
    • (2003) Nucleic Acids Res. , vol.31 , pp. 6444-6449
    • Pusch, O.1    Boden, D.2    Silbermann, R.3    Lee, F.4    Tucker, L.5    Ramratnam, B.6
  • 25
    • 77957807722 scopus 로고    scopus 로고
    • Deriving four functional anti-HIV siRNAs from a single Pol III-generated transcript comprising two adjacent long hairpin RNA precursors
    • Saayman, S., Arbuthnot, P., and Weinberg, M. S. (2010). Deriving four functional anti-HIV siRNAs from a single Pol III-generated transcript comprising two adjacent long hairpin RNA precursors. Nucleic Acids Res. 38, 6652–6663. doi: 10.1093/nar/gkq460
    • (2010) Nucleic Acids Res. , vol.38 , pp. 6652-6663
    • Saayman, S.1    Arbuthnot, P.2    Weinberg, M.S.3
  • 26
    • 39549117574 scopus 로고    scopus 로고
    • HIV-1 resistance to the anti-HIV activity of a shRNA targeting a dual-coding region
    • Senserrich, J., Pauls, E., Armand-Ugon, M., Clotet-Codina, I., Moncunill, G., Clotet, B., et al. (2008). HIV-1 resistance to the anti-HIV activity of a shRNA targeting a dual-coding region. Virology 372, 421–429. doi: 10.1016/j.virol.2007.10.045
    • (2008) Virology , vol.372 , pp. 421-429
    • Senserrich, J.1    Pauls, E.2    Armand-Ugon, M.3    Clotet-Codina, I.4    Moncunill, G.5    Clotet, B.6
  • 27
    • 84859440756 scopus 로고    scopus 로고
    • HIV develops indirect crossresistance to combinatorial RNAi targeting two distinct and spatially distant sites
    • Shah, P. S., Pham, N. P., and Schaffer, D. V. (2012). HIV develops indirect crossresistance to combinatorial RNAi targeting two distinct and spatially distant sites. Mol. Ther. 20, 840–848. doi: 10.1038/mt.2012.3
    • (2012) Mol. Ther. , vol.20 , pp. 840-848
    • Shah, P.S.1    Pham, N.P.2    Schaffer, D.V.3
  • 28
    • 84996599524 scopus 로고    scopus 로고
    • Development of lentiviral vectors simultaneously expressing multiple siRNAs against CCR5, vif and tat/rev genes for an HIV-1 gene therapy approach
    • Spanevello, F., Calistri, A., Del Vecchio, C., Mantelli, B., Frasson, C., Basso, G., et al. (2016). Development of lentiviral vectors simultaneously expressing multiple siRNAs against CCR5, vif and tat/rev genes for an HIV-1 gene therapy approach. Mol. Ther. Nucleic Acids 5, e312. doi: 10.1038/mtna.2016.24
    • (2016) Mol. Ther. Nucleic Acids , vol.5
    • Spanevello, F.1    Calistri, A.2    Del Vecchio, C.3    Mantelli, B.4    Frasson, C.5    Basso, G.6
  • 29
    • 33646736068 scopus 로고    scopus 로고
    • A novel approach for inhibition of HIV-1 by RNA interference: counteracting viral escape with a second generation of siRNAs
    • ter Brake, O., and Berkhout, B. (2005). A novel approach for inhibition of HIV-1 by RNA interference: counteracting viral escape with a second generation of siRNAs. J. RNAi Gene Silencing 1, 56–65.
    • (2005) J. RNAi Gene Silencing , vol.1 , pp. 56-65
    • ter Brake, O.1    Berkhout, B.2
  • 30
    • 40149092147 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 escape is restricted when conserved genome sequences are targeted by RNA interference
    • von Eije, K. J., ter Brake, O., and Berkhout, B. (2008). Human immunodeficiency virus type 1 escape is restricted when conserved genome sequences are targeted by RNA interference. J. Virol. 82, 2895–2903. doi: 10.1128/JVI.02035-07
    • (2008) J. Virol. , vol.82 , pp. 2895-2903
    • von Eije, K.J.1    ter Brake, O.2    Berkhout, B.3
  • 31
    • 13844320402 scopus 로고    scopus 로고
    • HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome
    • Westerhout, E. M., Ooms, M., Vink, M., Das, A. T., and Berkhout, B. (2005). HIV-1 can escape from RNA interference by evolving an alternative structure in its RNA genome. Nucleic Acids Res. 33, 796–804. doi: 10.1093/nar/gki220
    • (2005) Nucleic Acids Res. , vol.33 , pp. 796-804
    • Westerhout, E.M.1    Ooms, M.2    Vink, M.3    Das, A.T.4    Berkhout, B.5
  • 32
    • 84905483367 scopus 로고    scopus 로고
    • Antiretroviral-related alopecia in HIVinfected patients: a review of the literature
    • Woods, E. A., and Foisy, M. M. (2014). Antiretroviral-related alopecia in HIVinfected patients: a review of the literature. Ann. Pharmacother. 48, 1187–1193. doi: 10.1177/1060028014540451
    • (2014) Ann. Pharmacother. , vol.48 , pp. 1187-1193
    • Woods, E.A.1    Foisy, M.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.