UpSetR: An R package for the visualization of intersecting sets and their properties

Bioinformatics

Volumn 33, Issue 18, 2017, Pages 2938-2940

  Conway, Jake R ^a   Lex, Alexander ^b   Gehlenborg, Nils ^a  

^a HARVARD MEDICAL SCHOOL   (United States)

^b University of Utah   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGY; DNA SEQUENCE; GENOTYPING TECHNIQUE; PROCEDURES; SOFTWARE;

COMPUTATIONAL BIOLOGY; GENOTYPING TECHNIQUES; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 85028383131     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btx364     Document Type: Article

References (9)

1. Alsallakh,B. et al. (2016) The State-of-the-Art of Set Visualization. Computer Graphics Forum, 35: 234-260.
2. Chen,H. and Boutros,P.C. (2011) VennDiagram: a package for the generation of highly-customizable Venn & Euler diagrams in R. BMC Bioinformatics, 12, 35.
3. Cleveland,W.S. and McGill,R. (1984) Graphical perception: Theory, experimentation, and application to the development of graphical methods. J. Am. Stat. Assoc, 79, 531-554.
4. D'Hont,A. et al. (2012) The banana (musa acuminata) genome and the evolution of monocotyledonous plants. Nature, 488, 213-217.
5. Lex,A., and Gehlenborg,N. (2014) Sets & intersections. Nat. Methods, 11, 779.
6. Lex,A. et al. (2014) UpSet: Visualization of intersecting sets. IEEE Trans. Vis. Comput. Graph., 20, 1983-1992.
7. Wickham,H. (2009). ggplot2: Elegant Graphics for Data Analysis. Springer, New York.
8. Wilkinson,L. (2012) Exact and approximate area-proportional circular Venn and Euler diagrams. IEEE Trans. Vis. Comput. Graph., 18, 321-331.
9. Xu,F. et al. (2012) A fast and accurate SNP detection algorithm for nextgeneration sequencing data. Nat. Commun., 3, 1258.