Revisited distribution of nonfermenting Gram-negative bacilli clinical isolates

European Journal of Clinical Microbiology and Infectious Diseases

Volumn 30, Issue 12, 2011, Pages 1579-1586

  Jacquier, H ^a   Carbonnelle, E ^a,b   Corvec, S ^c,d   Illiaquer, M ^c,d   Le Monnier, A ^e   Bille, E ^a,f   Zahar, J R ^a,f   Beretti, J L ^f   Jaureguy F ^g   Fihman, V ^h   Tankovic, J ⁱ   Cattoir, V ^j,k  

^a UNIVERSITÉ PARIS DESCARTES   (France)

^b HÔPITAL EUROPÉEN GEORGES POMPIDOU   (France)

^c NANTES UNIVERSITY HOSPITAL   (France)

^d UNIVERSITÉ DE NANTES   (France)

^e CENTRE HOSPITALIER DE VERSAILLES   (France)

^f HÔPITAL NECKER ENFANTS MALADES   (France)

^g UNIVERSITÉ PARIS 13   (France)

^h HÔPITAL LOUIS MOURIER   (France)

ⁱ ASSISTANCE PUBLIQUE HÔPITAUX DE PARIS   (France)

^j CHU CÔTE DE NACRE   (France)

^k UNIVERSITÉ DE CAEN   (France)

more..

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

ACCURACY; ACHROMOBACTER XYLOSOXIDANS; ACINETOBACTER BAUMANNII; ANALYTIC METHOD; API 20 NE SYSTEM; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BIOCHEMISTRY; CONTROLLED STUDY; FRANCE; GENE SEQUENCE; GENOTYPE; GRAM NEGATIVE BACTERIUM; INTERMETHOD COMPARISON; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONFERMENTING GRAM NEGATIVE BACILLUS; NONHUMAN; PRIORITY JOURNAL; PROSPECTIVE STUDY; PSEUDOMONAS AERUGINOSA; PSEUDOMONAS PUTIDA; SPECIES DISTRIBUTION; STENOTROPHOMONAS MALTOPHILIA; VITEK 2 SYSTEM;

EID: 85027939877     PISSN: 09349723     EISSN: 14354373     Source Type: Journal    
DOI: 10.1007/s10096-011-1263-5     Document Type: Article

References (28)

1. DA Enoch CI Birkett HA Ludlam 2007 Non-fermentative Gram-negative bacteria Int J Antimicrob Agents 29 Suppl 3 S33 41 17659210 10.1016/S0924- 8579(07)72176-3 1:CAS:528:DC%2BD2sXptV2hsLc%3D (Pubitemid 47058922)
2. JD McMenamin TM Zaccone T Coenye P Vandamme JJ LiPuma 2000 Misidentification of Burkholderia cepacia in US cystic fibrosis treatment centers: an analysis of 1,051 recent sputum isolates Chest 117 1661 1665 10858399 10.1378/chest.117.6.1661 1:STN:280:DC%2BD3czhs12mtw%3D%3D (Pubitemid 30413360)
3. X Qin J Emerson J Stapp L Stapp P Abe JL Burns 2003 Use of real-time PCR with multiple targets to identify Pseudomonas aeruginosa and other nonfermenting Gram-negative bacilli from patients with cystic fibrosis J Clin Microbiol 41 4312 4317 12958262 10.1128/JCM.41.9.4312-4317.2003 1:CAS:528: DC%2BD3sXnvFaqtbg%3D (Pubitemid 37099701)
4. MP Ryan JT Pembroke CC Adley 2006 Ralstonia pickettii: a persistent gram-negative nosocomial infectious organism J Hosp Infect 62 278 284 16337309 10.1016/j.jhin.2005.08.015 1:STN:280:DC%2BD28%2Fos1yksQ%3D%3D (Pubitemid 43192318)
5. PP Bosshard R Zbinden S Abels B Boddinghaus M Altwegg EC Bottger 2006 16 S rRNA gene sequencing versus the API 20 NE system and the VITEK 2 ID-GNB card for identification of nonfermenting Gram-negative bacteria in the clinical laboratory J Clin Microbiol 44 1359 1366 16597863 10.1128/JCM.44.4.1359-1366. 2006 1:CAS:528:DC%2BD28XkvVamsL4%3D
6. N Wellinghausen J Kothe B Wirths A Sigge S Poppert 2005 Superiority of molecular techniques for identification of gram-negative, oxidase-positive rods, including morphologically nontypical Pseudomonas aeruginosa, from patients with cystic fibrosis J Clin Microbiol 43 4070 4075 16081953 10.1128/JCM.43.8.4070- 4075.2005 1:CAS:528:DC%2BD2MXpvVCqsrg%3D (Pubitemid 41129702)
7. F Wallet C Loiez E Renaux N Lemaitre RJ Courcol 2005 Performances of VITEK 2 colorimetric cards for identification of Gram-positive and Gram-negative bacteria J Clin Microbiol 43 4402 4406 16145083 10.1128/JCM.43.9.4402-4406.2005 (Pubitemid 41298219)
8. A Zbinden EC Bottger PP Bosshard R Zbinden 2007 Evaluation of the colorimetric VITEK 2 card for identification of Gram-negative nonfermentative rods: comparison to 16 S rRNA gene sequencing J Clin Microbiol 45 2270 2273 17507509 10.1128/JCM.02604-06 1:STN:280:DC%2BD2szpsVWlsw%3D%3D (Pubitemid 47203805)
9. A Ferroni I Sermet-Gaudelus E Abachin G Quesne G Lenoir P Berche JL Gaillard 2002 Use of 16 S rRNA gene sequencing for identification of nonfermenting Gram-negative bacilli recovered from patients attending a single cystic fibrosis center J Clin Microbiol 40 3793 3797 12354883 10.1128/JCM.40.10.3793-3797.2002 1:CAS:528:DC%2BD38Xot1Gntbo%3D
10. JL Cloud D Harmsen PC Iwen JJ Dunn G Hall PR Lasala K Hoggan D Wilson GL Woods A Mellmann 2010 Comparison of traditional phenotypic identification methods with partial 5′ 16 S rRNA gene sequencing for species-level identification of nonfermenting Gram-negative bacilli J Clin Microbiol 48 1442 1444 20164273 10.1128/JCM.00169-10
11. P Seng M Drancourt F Gouriet B La Scola PE Fournier JM Rolain D Raoult 2009 Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry Clin Infect Dis 49 543 551 19583519 10.1086/600885 1:CAS:528:DC%2BD1MXhtVOmsrzM
12. A Bizzini C Durussel J Bille G Greub G Prod'hom 2010 Performance of matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of bacterial strains routinely isolated in a clinical microbiology laboratory J Clin Microbiol 48 5 1549 1554 20220166 10.1128/JCM.01794-09 1:CAS:528:DC%2BC3cXnt1Cgtbg%3D
13. E Nagy T Maier E Urban G Terhes M Kostrzewa 2009 Species identification of clinical isolates of Bacteroides by matrix-assisted laser-desorption/ ionization time-of-flight mass spectrometry Clin Microbiol Infect 15 796 802 19438622 10.1111/j.1469-0691.2009.02788.x 1:CAS:528:DC%2BD1MXht1WhtL3N
14. E Carbonnelle JL Beretti S Cottyn G Quesne P Berche X Nassif A Ferroni 2007 Rapid identification of Staphylococci isolated in clinical microbiology laboratories by matrix-assisted laser desorption ionization-time of flight mass spectrometry J Clin Microbiol 45 2156 2161 17507519 10.1128/JCM.02405-06 1:CAS:528:DC%2BD2sXptFGltr4%3D (Pubitemid 47203786)
15. M Pignone KM Greth J Cooper D Emerson J Tang 2006 Identification of mycobacteria by matrix-assisted laser desorption ionization-time-of-flight mass spectrometry J Clin Microbiol 44 1963 1970 16757585 10.1128/JCM.01959-05 1:CAS:528:DC%2BD28XmvFKhu7s%3D (Pubitemid 43904329)
16. N Degand E Carbonnelle B Dauphin JL Beretti M Le Bourgeois I Sermet-Gaudelus C Segonds P Berche X Nassif A Ferroni 2008 Matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of nonfermenting Gram-negative bacilli isolated from cystic fibrosis patients J Clin Microbiol 46 3361 3367 18685005 10.1128/JCM.00569-08 1:CAS:528: DC%2BD1cXht12ru77E
17. TC Horan M Andrus MA Dudeck 2008 CDC/NHSN surveillance definition of health care-associated infection and criteria for specific types of infections in the acute care setting Am J Infect Control 36 309 332 18538699 10.1016/j.ajic.2008.03.002 (Pubitemid 351763841)
18. Lane D (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. John Wiley & Sons, Ltd, Chichester, United Kingdom, pp 115-175
19. JE Clarridge 3rd 2004 Impact of 16 S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases Clin Microbiol Rev 17 840 862 15489351 10.1128/CMR.17.4.840-862.2004 1:CAS:528:DC%2BD2cXhtVSht7nM (Pubitemid 39372520)
20. R Martino L Gomez R Pericas R Salazar C Sola J Sierra J Garau 2000 Bacteraemia caused by non-glucose-fermenting Gram-negative bacilli and Aeromonas species in patients with haematological malignancies and solid tumours Eur J Clin Microbiol Infect Dis 19 320 323 10834826 10.1007/s100960050485 1:STN:280:DC%2BD3czpsFWmsw%3D%3D (Pubitemid 30255619)
21. J Jugo R Kennedy MJ Crowe G Lamrock RB McClurg PJ Rooney TC Morris PG Johnston 2002 Trends in bacteraemia on the haematology and oncology units of a UK tertiary referral hospital J Hosp Infect 50 48 55 11825052 10.1053/jhin.2001.1101 1:STN:280:DC%2BD387is12ktg%3D%3D (Pubitemid 37554681)
22. C Aumeran C Paillard F Robin J Kanold O Baud R Bonnet B Souweine O Traore 2007 Pseudomonas aeruginosa and Pseudomonas putida outbreak associated with contaminated water outlets in an oncohaematology paediatric unit J Hosp Infect 65 47 53 17141370 10.1016/j.jhin.2006.08.009 1:STN:280:DC%2BD28jltVagsQ%3D%3D (Pubitemid 44939366)
23. S Nseir C Di Pompeo H Brisson F Dewavrin S Tissier M Diarra M Boulo A Durocher 2006 Intensive care unit-acquired Stenotrophomonas maltophilia: incidence, risk factors, and outcome Crit Care 10 R143 17026755 10.1186/cc5063 (Pubitemid 47086950)
24. L Saiman J Siegel 2004 Infection control in cystic fibrosis Clin Microbiol Rev 17 57 71 14726455 10.1128/CMR.17.1.57-71.2004 (Pubitemid 38120929)
25. G Funke P Funke-Kissling 2004 Evaluation of the new VITEK 2 card for identification of clinically relevant gram-negative rods J Clin Microbiol 42 4067 4071 15364991 10.1128/JCM.42.9.4067-4071.2004 1:CAS:528: DC%2BD2cXosVyiurw%3D (Pubitemid 39296125)
26. A Mellmann J Cloud T Maier U Keckevoet I Ramminger P Iwen J Dunn G Hall D Wilson P Lasala M Kostrzewa D Harmsen 2008 Evaluation of matrix-assisted laser desorption ionization-time-of-flight mass spectrometry in comparison to 16 S rRNA gene sequencing for species identification of nonfermenting bacteria J Clin Microbiol 46 1946 1954 18400920 10.1128/JCM.00157-08 1:CAS:528: DC%2BD1cXotFGhs7c%3D (Pubitemid 351831825)
27. A Mellmann F Bimet C Bizet AD Borovskaya RR Drake U Eigner AM Fahr Y He EN Ilina M Kostrzewa T Maier L Mancinelli W Moussaoui G Prevost L Putignani CL Seachord YW Tang D Harmsen 2009 High interlaboratory reproducibility of matrix-assisted laser desorption ionization-time of flight mass spectrometry-based species identification of nonfermenting bacteria J Clin Microbiol 47 3732 3734 19776231 10.1128/JCM.00921-09 1:CAS:528: DC%2BD1MXhsFems73I
28. A Minan A Bosch P Lasch M Stammler DO Serra J Degrossi B Gatti C Vay M D'Aquino O Yantorno D Naumann 2009 Rapid identification of Burkholderia cepacia complex species including strains of the novel Taxon K, recovered from cystic fibrosis patients by intact cell MALDI-ToF mass spectrometry Analyst 134 1138 1148 19475140 10.1039/b822669e 1:CAS:528:DC%2BD1MXmsVSnu7Y%3D