-
1
-
-
84969625483
-
Nested association mapping of stem rust resistance in wheat using genotyping by sequencing
-
Bajgain, P., Rouse, M.N., Tsilo, T.J., et al. Nested association mapping of stem rust resistance in wheat using genotyping by sequencing. PLoS One 11 (2016), 1–22, 10.1371/journal.pone.0155760.
-
(2016)
PLoS One
, vol.11
, pp. 1-22
-
-
Bajgain, P.1
Rouse, M.N.2
Tsilo, T.J.3
-
2
-
-
84885948797
-
Multi-parent advanced generation inter-cross (MAGIC) populations in rice: progress and potential for genetics research and breeding
-
Bandillo, N., Raghavan, C., Muyco, P., et al. Multi-parent advanced generation inter-cross (MAGIC) populations in rice: progress and potential for genetics research and breeding. Rice 6 (2013), 1–15.
-
(2013)
Rice
, vol.6
, pp. 1-15
-
-
Bandillo, N.1
Raghavan, C.2
Muyco, P.3
-
3
-
-
84911981891
-
Applying association mapping and genomic selection to the dissection of key traits in elite European wheat
-
Bentley, A.R., Scutari, M., Gosman, N., et al. Applying association mapping and genomic selection to the dissection of key traits in elite European wheat. Theor. Appl. Genet. 127 (2014), 2619–2633.
-
(2014)
Theor. Appl. Genet.
, vol.127
, pp. 2619-2633
-
-
Bentley, A.R.1
Scutari, M.2
Gosman, N.3
-
4
-
-
54949113665
-
Molecular markers and selection for complex traits in plants: learning from the last 20 years
-
Bernardo, R., Molecular markers and selection for complex traits in plants: learning from the last 20 years. Crop Sci., 48, 2008, 1649.
-
(2008)
Crop Sci.
, vol.48
, pp. 1649
-
-
Bernardo, R.1
-
5
-
-
33644781694
-
Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars
-
Breseghello, F., Sorrells, M., Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172 (2006), 1165–1177.
-
(2006)
Genetics
, vol.172
, pp. 1165-1177
-
-
Breseghello, F.1
Sorrells, M.2
-
6
-
-
68449083317
-
The genetic architecture of maize flowering time
-
Buckler, E.S., Holland, J.B., Bradbury, P.J., et al. The genetic architecture of maize flowering time. Science 7:325 (2009), 714–718, 10.1126/science.1174276.
-
(2009)
Science
, vol.7
, Issue.325
, pp. 714-718
-
-
Buckler, E.S.1
Holland, J.B.2
Bradbury, P.J.3
-
7
-
-
41149121474
-
From mutations to MAGIC; resources for gene discovery, validation and delivery in crop plants
-
Cavanagh, C., Morell, M., Mackay, I., Powell, W., From mutations to MAGIC; resources for gene discovery, validation and delivery in crop plants. Curr. Opin. Plant Biol. 11 (2008), 215–221.
-
(2008)
Curr. Opin. Plant Biol.
, vol.11
, pp. 215-221
-
-
Cavanagh, C.1
Morell, M.2
Mackay, I.3
Powell, W.4
-
8
-
-
84856582669
-
Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels
-
Cook, J.P., McMullen, M.D., Holland, J.B., et al. Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels. Plant Physiol. 158 (2012), 824–834.
-
(2012)
Plant Physiol.
, vol.158
, pp. 824-834
-
-
Cook, J.P.1
McMullen, M.D.2
Holland, J.B.3
-
9
-
-
84941220749
-
Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays
-
Dell'Acqua, M., Gatti, D.M., Pea, G., et al. Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays. Genome Biol., 16, 2015, 167, 10.1186/s13059-015-0716-z.
-
(2015)
Genome Biol.
, vol.16
, pp. 167
-
-
Dell'Acqua, M.1
Gatti, D.M.2
Pea, G.3
-
10
-
-
84871785294
-
An introduction to population genetic theory. By J. F. Crow and M. Kimura. Harper and Row, New York. 656 pp. 1970
-
Fraser, A.S., An introduction to population genetic theory. By J. F. Crow and M. Kimura. Harper and Row, New York. 656 pp. 1970. Teratology 5 (1972), 386–387, 10.1002/tera.1420050318.
-
(1972)
Teratology
, vol.5
, pp. 386-387
-
-
Fraser, A.S.1
-
11
-
-
84955569814
-
A highly recombined, high-density, eight-founder wheat MAGIC map reveals extensive segregation distortion and genomic locations of introgression segments
-
Gardner, K.A., Wittern, L.M., Mackay, I.J., A highly recombined, high-density, eight-founder wheat MAGIC map reveals extensive segregation distortion and genomic locations of introgression segments. Plant Biotechnol. J. 14 (2016), 1406–1417.
-
(2016)
Plant Biotechnol. J.
, vol.14
, pp. 1406-1417
-
-
Gardner, K.A.1
Wittern, L.M.2
Mackay, I.J.3
-
12
-
-
78650758776
-
Nested association mapping for identification of functional markers
-
Guo, B., Sleper, D.A., Beavis, W.D., Nested association mapping for identification of functional markers. Genetics 186 (2010), 373–383.
-
(2010)
Genetics
, vol.186
, pp. 373-383
-
-
Guo, B.1
Sleper, D.A.2
Beavis, W.D.3
-
13
-
-
84907916501
-
Multiparental mapping of plant height and flowering time QTL in partially isogenic sorghum families
-
Higgins, R.H., Thurber, C.S., Assaranurak, I., Brown, P.J., Multiparental mapping of plant height and flowering time QTL in partially isogenic sorghum families. G3 (Bethesda) 4 (2014), 1593–1602.
-
(2014)
G3 (Bethesda)
, vol.4
, pp. 1593-1602
-
-
Higgins, R.H.1
Thurber, C.S.2
Assaranurak, I.3
Brown, P.J.4
-
14
-
-
84855963371
-
Computer simulations: tools for population and evolutionary genetics
-
Hoban, S., Bertorelle, G., Gaggiotti, O.E., Computer simulations: tools for population and evolutionary genetics. Nat. Rev. Genet. 13 (2011), 110–122.
-
(2011)
Nat. Rev. Genet.
, vol.13
, pp. 110-122
-
-
Hoban, S.1
Bertorelle, G.2
Gaggiotti, O.E.3
-
15
-
-
79952719931
-
Analysis of natural allelic variation in Arabidopsis using a multiparent recombinant inbred line population
-
Huang, X., Paulo, M.-J., Boer, M., et al. Analysis of natural allelic variation in Arabidopsis using a multiparent recombinant inbred line population. Proc. Natl. Acad. Sci. U. S. A. 108 (2011), 4488–4493.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 4488-4493
-
-
Huang, X.1
Paulo, M.-J.2
Boer, M.3
-
16
-
-
84864509188
-
A multiparent advanced generation inter-cross population for genetic analysis in wheat
-
Huang, B.E., George, A.W., Forrest, K.L., et al. A multiparent advanced generation inter-cross population for genetic analysis in wheat. Plant Biotechnol. J. 10 (2012), 826–839.
-
(2012)
Plant Biotechnol. J.
, vol.10
, pp. 826-839
-
-
Huang, B.E.1
George, A.W.2
Forrest, K.L.3
-
17
-
-
84937759091
-
MAGIC populations in crops: current status and future prospects
-
Huang, B.E., Verbyla, K.L., Verbyla, A.P., et al. MAGIC populations in crops: current status and future prospects. Theor. Appl. Genet. 128 (2015), 999–1017.
-
(2015)
Theor. Appl. Genet.
, vol.128
, pp. 999-1017
-
-
Huang, B.E.1
Verbyla, K.L.2
Verbyla, A.P.3
-
18
-
-
0035866187
-
Diversity arrays: a solid state technology for sequence information independent genotyping
-
Jaccoud, D., Peng, K., Feinstein, D., Kilian, A., Diversity arrays: a solid state technology for sequence information independent genotyping. Nucleic Acids Res., 29(4), 2001, e25.
-
(2001)
Nucleic Acids Res.
, vol.29
, Issue.4
, pp. e25
-
-
Jaccoud, D.1
Peng, K.2
Feinstein, D.3
Kilian, A.4
-
19
-
-
34548557191
-
Identifying quantitative trait locus by genetic background interactions in association studies
-
Jannink, J.L., Identifying quantitative trait locus by genetic background interactions in association studies. Genetics 176 (2007), 553–561.
-
(2007)
Genetics
, vol.176
, pp. 553-561
-
-
Jannink, J.L.1
-
20
-
-
68249120152
-
A multiparent advanced generation inter-cross to fine-map quantitative traits in Arabidopsis thaliana
-
Kover, P.X., Valdar, W., Trakalo, J., et al. A multiparent advanced generation inter-cross to fine-map quantitative traits in Arabidopsis thaliana. PLoS Genet., 5, 2009, e1000551.
-
(2009)
PLoS Genet.
, vol.5
-
-
Kover, P.X.1
Valdar, W.2
Trakalo, J.3
-
21
-
-
0036597746
-
Genetic association studies: design, analysis and interpretation
-
Lewis, C.M., Genetic association studies: design, analysis and interpretation. Brief. Bioinform. 3 (2002), 146–153.
-
(2002)
Brief. Bioinform.
, vol.3
, pp. 146-153
-
-
Lewis, C.M.1
-
22
-
-
18744382780
-
PowerMarker: an integrated analysis environment for genetic marker analysis
-
Liu, K., Muse, S.V., PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21 (2005), 2128–2129.
-
(2005)
Bioinformatics
, vol.21
, pp. 2128-2129
-
-
Liu, K.1
Muse, S.V.2
-
23
-
-
84922214598
-
Using the UK reference population Avalon × Cadenza as a platform to compare breeding strategies in elite Western European bread wheat
-
Ma, J., Wingen, L.U., Orford, S., et al. Using the UK reference population Avalon × Cadenza as a platform to compare breeding strategies in elite Western European bread wheat. Mol. Breed., 35, 2015, 70.
-
(2015)
Mol. Breed.
, vol.35
, pp. 70
-
-
Ma, J.1
Wingen, L.U.2
Orford, S.3
-
24
-
-
84987216258
-
Pedigree analysis by computer simulation
-
MacCluer, J.W., Vandeberg, J.L., Read, B., Ryder, O., Pedigree analysis by computer simulation. Zoo Biol. 5 (1986), 147–160.
-
(1986)
Zoo Biol.
, vol.5
, pp. 147-160
-
-
MacCluer, J.W.1
Vandeberg, J.L.2
Read, B.3
Ryder, O.4
-
25
-
-
78651064003
-
The significance and relevance of linkage disequilibrium and association mapping in crops
-
Mackay, I.J., Powell, W., The significance and relevance of linkage disequilibrium and association mapping in crops. Trends Plant Sci., 12, 2007, 53.
-
(2007)
Trends Plant Sci.
, vol.12
, pp. 53
-
-
Mackay, I.J.1
Powell, W.2
-
26
-
-
84907907739
-
An eight-parent multiparent advanced generation inter-cross population for winter-sown wheat: creation, properties, and validation
-
Mackay, I.J., Bansept-Basler, P., Barber, T., et al. An eight-parent multiparent advanced generation inter-cross population for winter-sown wheat: creation, properties, and validation. G3 (Bethesda) 4 (2014), 1603–1610.
-
(2014)
G3 (Bethesda)
, vol.4
, pp. 1603-1610
-
-
Mackay, I.J.1
Bansept-Basler, P.2
Barber, T.3
-
27
-
-
68449094455
-
Genetic properties of the maize nested association mapping population
-
McMullen, M.D., Kresovich, S., Villeda, H.S., et al. Genetic properties of the maize nested association mapping population. Science 7:325 (2009), 737–740.
-
(2009)
Science
, vol.7
, Issue.325
, pp. 737-740
-
-
McMullen, M.D.1
Kresovich, S.2
Villeda, H.S.3
-
28
-
-
84946508136
-
Strategic pre-breeding for wheat improvement
-
Moore, G., Strategic pre-breeding for wheat improvement. Nat. Plants, 1, 2015, 15018.
-
(2015)
Nat. Plants
, vol.1
, pp. 15018
-
-
Moore, G.1
-
29
-
-
0034619331
-
A method for fine mapping quantitative trait loci in outbred animal stocks
-
Mott, R., Talbot, C.J., Turri, M.G., Collins, A.V., Flint, J., A method for fine mapping quantitative trait loci in outbred animal stocks. Proc. Natl. Acad. Sci. 97 (2000), 12649–12654.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, pp. 12649-12654
-
-
Mott, R.1
Talbot, C.J.2
Turri, M.G.3
Collins, A.V.4
Flint, J.5
-
30
-
-
69949135484
-
Association mapping: critical considerations shift from genotyping to experimental design
-
Myles, S., Peiffer, J., Brown, P.J., et al. Association mapping: critical considerations shift from genotyping to experimental design. Plant Cell 21 (2009), 2194–2202.
-
(2009)
Plant Cell
, vol.21
, pp. 2194-2202
-
-
Myles, S.1
Peiffer, J.2
Brown, P.J.3
-
31
-
-
0006919926
-
Analysis of gene diversity in subdivided populations
-
Nei, M., Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. 70 (1973), 3321–3323.
-
(1973)
Proc. Natl. Acad. Sci.
, vol.70
, pp. 3321-3323
-
-
Nei, M.1
-
32
-
-
84979900766
-
Development and genetic characterization of an advanced backcross-nested association mapping (AB-NAM) population of wild × cultivated barley
-
Nice, L.M., Steffenson, B.J., Brown-Guedira, G.L., Akhunov, E.D., et al. Development and genetic characterization of an advanced backcross-nested association mapping (AB-NAM) population of wild × cultivated barley. Genetics 203 (2016), 1453–1467.
-
(2016)
Genetics
, vol.203
, pp. 1453-1467
-
-
Nice, L.M.1
Steffenson, B.J.2
Brown-Guedira, G.L.3
Akhunov, E.D.4
-
33
-
-
84928183520
-
Potential of a tomato MAGIC population to decipher the genetic control of quantitative traits and detect causal variants in the resequencing era
-
Pascual, L., Desplat, N., Huang, B.E., et al. Potential of a tomato MAGIC population to decipher the genetic control of quantitative traits and detect causal variants in the resequencing era. Plant Biotechnol. J. 13 (2015), 565–577.
-
(2015)
Plant Biotechnol. J.
, vol.13
, pp. 565-577
-
-
Pascual, L.1
Desplat, N.2
Huang, B.E.3
-
34
-
-
84864913896
-
Sequence-based marker development in wheat: advances and applications to breeding
-
Paux, E., Sourdille, P., Mackay, I., Feuillet, C., Sequence-based marker development in wheat: advances and applications to breeding. Biotechnol. Adv. 30 (2012), 1071–1088.
-
(2012)
Biotechnol. Adv.
, vol.30
, pp. 1071-1088
-
-
Paux, E.1
Sourdille, P.2
Mackay, I.3
Feuillet, C.4
-
36
-
-
84923367894
-
Multi-parent advanced generation inter-cross in barley: high-resolution quantitative trait locus mapping for flowering time as a proof of concept
-
Sannemann, W., Huang, B., Mathew, B., Léon, J., Multi-parent advanced generation inter-cross in barley: high-resolution quantitative trait locus mapping for flowering time as a proof of concept. Mol. Breed. 35:3 (2015), 1–16.
-
(2015)
Mol. Breed.
, vol.35
, Issue.3
, pp. 1-16
-
-
Sannemann, W.1
Huang, B.2
Mathew, B.3
Léon, J.4
-
37
-
-
84876701974
-
GA: a package for genetic algorithms in R
-
Scrucca, L., GA: a package for genetic algorithms in R. J. Stat. Softw. 53 (2013), 1–37.
-
(2013)
J. Stat. Softw.
, vol.53
, pp. 1-37
-
-
Scrucca, L.1
-
38
-
-
84862991434
-
An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
-
Segura, V., Vilhjálmsson, B.J., Platt, A., et al. An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations. Nat. Genet. 44 (2012), 825–832.
-
(2012)
Nat. Genet.
, vol.44
, pp. 825-832
-
-
Segura, V.1
Vilhjálmsson, B.J.2
Platt, A.3
-
39
-
-
67349103634
-
Principles, requirements and prospects of genetic mapping in plants
-
Semagn, K., Bjørnstad, Å., Ndjiondjop, M.N., Principles, requirements and prospects of genetic mapping in plants. Afr. J. Biotechnol. 5 (2006), 2569–2587.
-
(2006)
Afr. J. Biotechnol.
, vol.5
, pp. 2569-2587
-
-
Semagn, K.1
Bjørnstad, Å.2
Ndjiondjop, M.N.3
-
40
-
-
84857433366
-
Ten years of the collaborative cross
-
Threadgill, D.W., Churchill, G.A., Ten years of the collaborative cross. Genetics 190 (2012), 291–294.
-
(2012)
Genetics
, vol.190
, pp. 291-294
-
-
Threadgill, D.W.1
Churchill, G.A.2
-
41
-
-
79251561130
-
Genome-wide association study of leaf architecture in the maize nested association mapping population
-
Tian, F., Bradbury, P.J., Brown, P.J., et al. Genome-wide association study of leaf architecture in the maize nested association mapping population. Nat. Genet. 43 (2011), 159–162.
-
(2011)
Nat. Genet.
, vol.43
, pp. 159-162
-
-
Tian, F.1
Bradbury, P.J.2
Brown, P.J.3
-
42
-
-
33746540478
-
Genome-wide genetic association of complex traits in heterogeneous stock mice
-
Valdar, W., Solberg, L.C., Gauguier, D., et al. Genome-wide genetic association of complex traits in heterogeneous stock mice. Nat. Genet. 38 (2006), 879–887.
-
(2006)
Nat. Genet.
, vol.38
, pp. 879-887
-
-
Valdar, W.1
Solberg, L.C.2
Gauguier, D.3
-
43
-
-
33645217146
-
Simulating the collaborative cross: power of quantitative trait loci detection and mapping resolution in large sets of recombinant inbred strains of mice
-
Valdar, W., Flint, J., Mott, R., Simulating the collaborative cross: power of quantitative trait loci detection and mapping resolution in large sets of recombinant inbred strains of mice. Genetics 172 (2006), 1783–1797.
-
(2006)
Genetics
, vol.172
, pp. 1783-1797
-
-
Valdar, W.1
Flint, J.2
Mott, R.3
-
44
-
-
84907445035
-
Whole-genome analysis of multienvironment or multitrait QTL in MAGIC
-
Verbyla, A.P., Cavanagh, C.R., Verbyla, K.L., Whole-genome analysis of multienvironment or multitrait QTL in MAGIC. G3 (Bethesda) 4 (2014), 1569–1584.
-
(2014)
G3 (Bethesda)
, vol.4
, pp. 1569-1584
-
-
Verbyla, A.P.1
Cavanagh, C.R.2
Verbyla, K.L.3
-
45
-
-
0003752712
-
Genetic Data Analysis II
-
Sinauer Associates Inc. USA
-
Weir, B.S., Genetic Data Analysis II. 1996, Sinauer Associates Inc., USA.
-
(1996)
-
-
Weir, B.S.1
-
46
-
-
85006494316
-
Genetic mapping of quantitative trait loci in crops
-
Xu, Y., Li, P., Yang, Z., Xu, C., Genetic mapping of quantitative trait loci in crops. Crop J., 2016.
-
(2016)
Crop J.
-
-
Xu, Y.1
Li, P.2
Yang, Z.3
Xu, C.4
-
47
-
-
31744440502
-
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
-
Yu, J., Pressoir, G., Briggs, W.H., Vroh Bi, I., et al. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat. Genet. 38:2 (2006), 203–208.
-
(2006)
Nat. Genet.
, vol.38
, Issue.2
, pp. 203-208
-
-
Yu, J.1
Pressoir, G.2
Briggs, W.H.3
Vroh Bi, I.4
-
48
-
-
40849089396
-
Genetic design and statistical power of nested association mapping in maize
-
Yu, J., Holland, J.B., McMullen, M.D., Buckler, E.S., Genetic design and statistical power of nested association mapping in maize. Genetics 178:1 (2008), 539–551.
-
(2008)
Genetics
, vol.178
, Issue.1
, pp. 539-551
-
-
Yu, J.1
Holland, J.B.2
McMullen, M.D.3
Buckler, E.S.4
-
49
-
-
33846466407
-
An Arabidopsis example of association mapping in structured samples
-
Zhao, K., Aranzana, M.J., Kim, S., Lister, C., et al. An Arabidopsis example of association mapping in structured samples. PLoS Genet., 3, 2007, e4.
-
(2007)
PLoS Genet.
, vol.3
-
-
Zhao, K.1
Aranzana, M.J.2
Kim, S.3
Lister, C.4
|