메뉴 건너뛰기




Volumn 11, Issue , 2016, Pages 9-17

Maximizing the potential of multi-parental crop populations

Author keywords

MAGIC; Mapping; NAM; Trait dissection; Wheat

Indexed keywords

COMPUTER MODEL; CONTROLLED STUDY; CROP; CROSS BREEDING; FOUNDER EFFECT; GENETIC TRAIT; GENETIC VARIABILITY; HAPLOTYPE; NONHUMAN; PEDIGREE; PRIORITY JOURNAL; REVIEW; SOFTWARE;

EID: 85027924255     PISSN: 22120661     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.atg.2016.10.002     Document Type: Review
Times cited : (39)

References (49)
  • 1
    • 84969625483 scopus 로고    scopus 로고
    • Nested association mapping of stem rust resistance in wheat using genotyping by sequencing
    • Bajgain, P., Rouse, M.N., Tsilo, T.J., et al. Nested association mapping of stem rust resistance in wheat using genotyping by sequencing. PLoS One 11 (2016), 1–22, 10.1371/journal.pone.0155760.
    • (2016) PLoS One , vol.11 , pp. 1-22
    • Bajgain, P.1    Rouse, M.N.2    Tsilo, T.J.3
  • 2
    • 84885948797 scopus 로고    scopus 로고
    • Multi-parent advanced generation inter-cross (MAGIC) populations in rice: progress and potential for genetics research and breeding
    • Bandillo, N., Raghavan, C., Muyco, P., et al. Multi-parent advanced generation inter-cross (MAGIC) populations in rice: progress and potential for genetics research and breeding. Rice 6 (2013), 1–15.
    • (2013) Rice , vol.6 , pp. 1-15
    • Bandillo, N.1    Raghavan, C.2    Muyco, P.3
  • 3
    • 84911981891 scopus 로고    scopus 로고
    • Applying association mapping and genomic selection to the dissection of key traits in elite European wheat
    • Bentley, A.R., Scutari, M., Gosman, N., et al. Applying association mapping and genomic selection to the dissection of key traits in elite European wheat. Theor. Appl. Genet. 127 (2014), 2619–2633.
    • (2014) Theor. Appl. Genet. , vol.127 , pp. 2619-2633
    • Bentley, A.R.1    Scutari, M.2    Gosman, N.3
  • 4
    • 54949113665 scopus 로고    scopus 로고
    • Molecular markers and selection for complex traits in plants: learning from the last 20 years
    • Bernardo, R., Molecular markers and selection for complex traits in plants: learning from the last 20 years. Crop Sci., 48, 2008, 1649.
    • (2008) Crop Sci. , vol.48 , pp. 1649
    • Bernardo, R.1
  • 5
    • 33644781694 scopus 로고    scopus 로고
    • Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars
    • Breseghello, F., Sorrells, M., Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172 (2006), 1165–1177.
    • (2006) Genetics , vol.172 , pp. 1165-1177
    • Breseghello, F.1    Sorrells, M.2
  • 6
    • 68449083317 scopus 로고    scopus 로고
    • The genetic architecture of maize flowering time
    • Buckler, E.S., Holland, J.B., Bradbury, P.J., et al. The genetic architecture of maize flowering time. Science 7:325 (2009), 714–718, 10.1126/science.1174276.
    • (2009) Science , vol.7 , Issue.325 , pp. 714-718
    • Buckler, E.S.1    Holland, J.B.2    Bradbury, P.J.3
  • 7
    • 41149121474 scopus 로고    scopus 로고
    • From mutations to MAGIC; resources for gene discovery, validation and delivery in crop plants
    • Cavanagh, C., Morell, M., Mackay, I., Powell, W., From mutations to MAGIC; resources for gene discovery, validation and delivery in crop plants. Curr. Opin. Plant Biol. 11 (2008), 215–221.
    • (2008) Curr. Opin. Plant Biol. , vol.11 , pp. 215-221
    • Cavanagh, C.1    Morell, M.2    Mackay, I.3    Powell, W.4
  • 8
    • 84856582669 scopus 로고    scopus 로고
    • Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels
    • Cook, J.P., McMullen, M.D., Holland, J.B., et al. Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels. Plant Physiol. 158 (2012), 824–834.
    • (2012) Plant Physiol. , vol.158 , pp. 824-834
    • Cook, J.P.1    McMullen, M.D.2    Holland, J.B.3
  • 9
    • 84941220749 scopus 로고    scopus 로고
    • Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays
    • Dell'Acqua, M., Gatti, D.M., Pea, G., et al. Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays. Genome Biol., 16, 2015, 167, 10.1186/s13059-015-0716-z.
    • (2015) Genome Biol. , vol.16 , pp. 167
    • Dell'Acqua, M.1    Gatti, D.M.2    Pea, G.3
  • 10
    • 84871785294 scopus 로고
    • An introduction to population genetic theory. By J. F. Crow and M. Kimura. Harper and Row, New York. 656 pp. 1970
    • Fraser, A.S., An introduction to population genetic theory. By J. F. Crow and M. Kimura. Harper and Row, New York. 656 pp. 1970. Teratology 5 (1972), 386–387, 10.1002/tera.1420050318.
    • (1972) Teratology , vol.5 , pp. 386-387
    • Fraser, A.S.1
  • 11
    • 84955569814 scopus 로고    scopus 로고
    • A highly recombined, high-density, eight-founder wheat MAGIC map reveals extensive segregation distortion and genomic locations of introgression segments
    • Gardner, K.A., Wittern, L.M., Mackay, I.J., A highly recombined, high-density, eight-founder wheat MAGIC map reveals extensive segregation distortion and genomic locations of introgression segments. Plant Biotechnol. J. 14 (2016), 1406–1417.
    • (2016) Plant Biotechnol. J. , vol.14 , pp. 1406-1417
    • Gardner, K.A.1    Wittern, L.M.2    Mackay, I.J.3
  • 12
    • 78650758776 scopus 로고    scopus 로고
    • Nested association mapping for identification of functional markers
    • Guo, B., Sleper, D.A., Beavis, W.D., Nested association mapping for identification of functional markers. Genetics 186 (2010), 373–383.
    • (2010) Genetics , vol.186 , pp. 373-383
    • Guo, B.1    Sleper, D.A.2    Beavis, W.D.3
  • 13
    • 84907916501 scopus 로고    scopus 로고
    • Multiparental mapping of plant height and flowering time QTL in partially isogenic sorghum families
    • Higgins, R.H., Thurber, C.S., Assaranurak, I., Brown, P.J., Multiparental mapping of plant height and flowering time QTL in partially isogenic sorghum families. G3 (Bethesda) 4 (2014), 1593–1602.
    • (2014) G3 (Bethesda) , vol.4 , pp. 1593-1602
    • Higgins, R.H.1    Thurber, C.S.2    Assaranurak, I.3    Brown, P.J.4
  • 14
    • 84855963371 scopus 로고    scopus 로고
    • Computer simulations: tools for population and evolutionary genetics
    • Hoban, S., Bertorelle, G., Gaggiotti, O.E., Computer simulations: tools for population and evolutionary genetics. Nat. Rev. Genet. 13 (2011), 110–122.
    • (2011) Nat. Rev. Genet. , vol.13 , pp. 110-122
    • Hoban, S.1    Bertorelle, G.2    Gaggiotti, O.E.3
  • 15
    • 79952719931 scopus 로고    scopus 로고
    • Analysis of natural allelic variation in Arabidopsis using a multiparent recombinant inbred line population
    • Huang, X., Paulo, M.-J., Boer, M., et al. Analysis of natural allelic variation in Arabidopsis using a multiparent recombinant inbred line population. Proc. Natl. Acad. Sci. U. S. A. 108 (2011), 4488–4493.
    • (2011) Proc. Natl. Acad. Sci. U. S. A. , vol.108 , pp. 4488-4493
    • Huang, X.1    Paulo, M.-J.2    Boer, M.3
  • 16
    • 84864509188 scopus 로고    scopus 로고
    • A multiparent advanced generation inter-cross population for genetic analysis in wheat
    • Huang, B.E., George, A.W., Forrest, K.L., et al. A multiparent advanced generation inter-cross population for genetic analysis in wheat. Plant Biotechnol. J. 10 (2012), 826–839.
    • (2012) Plant Biotechnol. J. , vol.10 , pp. 826-839
    • Huang, B.E.1    George, A.W.2    Forrest, K.L.3
  • 17
    • 84937759091 scopus 로고    scopus 로고
    • MAGIC populations in crops: current status and future prospects
    • Huang, B.E., Verbyla, K.L., Verbyla, A.P., et al. MAGIC populations in crops: current status and future prospects. Theor. Appl. Genet. 128 (2015), 999–1017.
    • (2015) Theor. Appl. Genet. , vol.128 , pp. 999-1017
    • Huang, B.E.1    Verbyla, K.L.2    Verbyla, A.P.3
  • 18
    • 0035866187 scopus 로고    scopus 로고
    • Diversity arrays: a solid state technology for sequence information independent genotyping
    • Jaccoud, D., Peng, K., Feinstein, D., Kilian, A., Diversity arrays: a solid state technology for sequence information independent genotyping. Nucleic Acids Res., 29(4), 2001, e25.
    • (2001) Nucleic Acids Res. , vol.29 , Issue.4 , pp. e25
    • Jaccoud, D.1    Peng, K.2    Feinstein, D.3    Kilian, A.4
  • 19
    • 34548557191 scopus 로고    scopus 로고
    • Identifying quantitative trait locus by genetic background interactions in association studies
    • Jannink, J.L., Identifying quantitative trait locus by genetic background interactions in association studies. Genetics 176 (2007), 553–561.
    • (2007) Genetics , vol.176 , pp. 553-561
    • Jannink, J.L.1
  • 20
    • 68249120152 scopus 로고    scopus 로고
    • A multiparent advanced generation inter-cross to fine-map quantitative traits in Arabidopsis thaliana
    • Kover, P.X., Valdar, W., Trakalo, J., et al. A multiparent advanced generation inter-cross to fine-map quantitative traits in Arabidopsis thaliana. PLoS Genet., 5, 2009, e1000551.
    • (2009) PLoS Genet. , vol.5
    • Kover, P.X.1    Valdar, W.2    Trakalo, J.3
  • 21
    • 0036597746 scopus 로고    scopus 로고
    • Genetic association studies: design, analysis and interpretation
    • Lewis, C.M., Genetic association studies: design, analysis and interpretation. Brief. Bioinform. 3 (2002), 146–153.
    • (2002) Brief. Bioinform. , vol.3 , pp. 146-153
    • Lewis, C.M.1
  • 22
    • 18744382780 scopus 로고    scopus 로고
    • PowerMarker: an integrated analysis environment for genetic marker analysis
    • Liu, K., Muse, S.V., PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21 (2005), 2128–2129.
    • (2005) Bioinformatics , vol.21 , pp. 2128-2129
    • Liu, K.1    Muse, S.V.2
  • 23
    • 84922214598 scopus 로고    scopus 로고
    • Using the UK reference population Avalon × Cadenza as a platform to compare breeding strategies in elite Western European bread wheat
    • Ma, J., Wingen, L.U., Orford, S., et al. Using the UK reference population Avalon × Cadenza as a platform to compare breeding strategies in elite Western European bread wheat. Mol. Breed., 35, 2015, 70.
    • (2015) Mol. Breed. , vol.35 , pp. 70
    • Ma, J.1    Wingen, L.U.2    Orford, S.3
  • 25
    • 78651064003 scopus 로고    scopus 로고
    • The significance and relevance of linkage disequilibrium and association mapping in crops
    • Mackay, I.J., Powell, W., The significance and relevance of linkage disequilibrium and association mapping in crops. Trends Plant Sci., 12, 2007, 53.
    • (2007) Trends Plant Sci. , vol.12 , pp. 53
    • Mackay, I.J.1    Powell, W.2
  • 26
    • 84907907739 scopus 로고    scopus 로고
    • An eight-parent multiparent advanced generation inter-cross population for winter-sown wheat: creation, properties, and validation
    • Mackay, I.J., Bansept-Basler, P., Barber, T., et al. An eight-parent multiparent advanced generation inter-cross population for winter-sown wheat: creation, properties, and validation. G3 (Bethesda) 4 (2014), 1603–1610.
    • (2014) G3 (Bethesda) , vol.4 , pp. 1603-1610
    • Mackay, I.J.1    Bansept-Basler, P.2    Barber, T.3
  • 27
    • 68449094455 scopus 로고    scopus 로고
    • Genetic properties of the maize nested association mapping population
    • McMullen, M.D., Kresovich, S., Villeda, H.S., et al. Genetic properties of the maize nested association mapping population. Science 7:325 (2009), 737–740.
    • (2009) Science , vol.7 , Issue.325 , pp. 737-740
    • McMullen, M.D.1    Kresovich, S.2    Villeda, H.S.3
  • 28
    • 84946508136 scopus 로고    scopus 로고
    • Strategic pre-breeding for wheat improvement
    • Moore, G., Strategic pre-breeding for wheat improvement. Nat. Plants, 1, 2015, 15018.
    • (2015) Nat. Plants , vol.1 , pp. 15018
    • Moore, G.1
  • 29
    • 0034619331 scopus 로고    scopus 로고
    • A method for fine mapping quantitative trait loci in outbred animal stocks
    • Mott, R., Talbot, C.J., Turri, M.G., Collins, A.V., Flint, J., A method for fine mapping quantitative trait loci in outbred animal stocks. Proc. Natl. Acad. Sci. 97 (2000), 12649–12654.
    • (2000) Proc. Natl. Acad. Sci. , vol.97 , pp. 12649-12654
    • Mott, R.1    Talbot, C.J.2    Turri, M.G.3    Collins, A.V.4    Flint, J.5
  • 30
    • 69949135484 scopus 로고    scopus 로고
    • Association mapping: critical considerations shift from genotyping to experimental design
    • Myles, S., Peiffer, J., Brown, P.J., et al. Association mapping: critical considerations shift from genotyping to experimental design. Plant Cell 21 (2009), 2194–2202.
    • (2009) Plant Cell , vol.21 , pp. 2194-2202
    • Myles, S.1    Peiffer, J.2    Brown, P.J.3
  • 31
    • 0006919926 scopus 로고
    • Analysis of gene diversity in subdivided populations
    • Nei, M., Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. 70 (1973), 3321–3323.
    • (1973) Proc. Natl. Acad. Sci. , vol.70 , pp. 3321-3323
    • Nei, M.1
  • 32
    • 84979900766 scopus 로고    scopus 로고
    • Development and genetic characterization of an advanced backcross-nested association mapping (AB-NAM) population of wild × cultivated barley
    • Nice, L.M., Steffenson, B.J., Brown-Guedira, G.L., Akhunov, E.D., et al. Development and genetic characterization of an advanced backcross-nested association mapping (AB-NAM) population of wild × cultivated barley. Genetics 203 (2016), 1453–1467.
    • (2016) Genetics , vol.203 , pp. 1453-1467
    • Nice, L.M.1    Steffenson, B.J.2    Brown-Guedira, G.L.3    Akhunov, E.D.4
  • 33
    • 84928183520 scopus 로고    scopus 로고
    • Potential of a tomato MAGIC population to decipher the genetic control of quantitative traits and detect causal variants in the resequencing era
    • Pascual, L., Desplat, N., Huang, B.E., et al. Potential of a tomato MAGIC population to decipher the genetic control of quantitative traits and detect causal variants in the resequencing era. Plant Biotechnol. J. 13 (2015), 565–577.
    • (2015) Plant Biotechnol. J. , vol.13 , pp. 565-577
    • Pascual, L.1    Desplat, N.2    Huang, B.E.3
  • 34
    • 84864913896 scopus 로고    scopus 로고
    • Sequence-based marker development in wheat: advances and applications to breeding
    • Paux, E., Sourdille, P., Mackay, I., Feuillet, C., Sequence-based marker development in wheat: advances and applications to breeding. Biotechnol. Adv. 30 (2012), 1071–1088.
    • (2012) Biotechnol. Adv. , vol.30 , pp. 1071-1088
    • Paux, E.1    Sourdille, P.2    Mackay, I.3    Feuillet, C.4
  • 36
    • 84923367894 scopus 로고    scopus 로고
    • Multi-parent advanced generation inter-cross in barley: high-resolution quantitative trait locus mapping for flowering time as a proof of concept
    • Sannemann, W., Huang, B., Mathew, B., Léon, J., Multi-parent advanced generation inter-cross in barley: high-resolution quantitative trait locus mapping for flowering time as a proof of concept. Mol. Breed. 35:3 (2015), 1–16.
    • (2015) Mol. Breed. , vol.35 , Issue.3 , pp. 1-16
    • Sannemann, W.1    Huang, B.2    Mathew, B.3    Léon, J.4
  • 37
    • 84876701974 scopus 로고    scopus 로고
    • GA: a package for genetic algorithms in R
    • Scrucca, L., GA: a package for genetic algorithms in R. J. Stat. Softw. 53 (2013), 1–37.
    • (2013) J. Stat. Softw. , vol.53 , pp. 1-37
    • Scrucca, L.1
  • 38
    • 84862991434 scopus 로고    scopus 로고
    • An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
    • Segura, V., Vilhjálmsson, B.J., Platt, A., et al. An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations. Nat. Genet. 44 (2012), 825–832.
    • (2012) Nat. Genet. , vol.44 , pp. 825-832
    • Segura, V.1    Vilhjálmsson, B.J.2    Platt, A.3
  • 39
    • 67349103634 scopus 로고    scopus 로고
    • Principles, requirements and prospects of genetic mapping in plants
    • Semagn, K., Bjørnstad, Å., Ndjiondjop, M.N., Principles, requirements and prospects of genetic mapping in plants. Afr. J. Biotechnol. 5 (2006), 2569–2587.
    • (2006) Afr. J. Biotechnol. , vol.5 , pp. 2569-2587
    • Semagn, K.1    Bjørnstad, Å.2    Ndjiondjop, M.N.3
  • 40
    • 84857433366 scopus 로고    scopus 로고
    • Ten years of the collaborative cross
    • Threadgill, D.W., Churchill, G.A., Ten years of the collaborative cross. Genetics 190 (2012), 291–294.
    • (2012) Genetics , vol.190 , pp. 291-294
    • Threadgill, D.W.1    Churchill, G.A.2
  • 41
    • 79251561130 scopus 로고    scopus 로고
    • Genome-wide association study of leaf architecture in the maize nested association mapping population
    • Tian, F., Bradbury, P.J., Brown, P.J., et al. Genome-wide association study of leaf architecture in the maize nested association mapping population. Nat. Genet. 43 (2011), 159–162.
    • (2011) Nat. Genet. , vol.43 , pp. 159-162
    • Tian, F.1    Bradbury, P.J.2    Brown, P.J.3
  • 42
    • 33746540478 scopus 로고    scopus 로고
    • Genome-wide genetic association of complex traits in heterogeneous stock mice
    • Valdar, W., Solberg, L.C., Gauguier, D., et al. Genome-wide genetic association of complex traits in heterogeneous stock mice. Nat. Genet. 38 (2006), 879–887.
    • (2006) Nat. Genet. , vol.38 , pp. 879-887
    • Valdar, W.1    Solberg, L.C.2    Gauguier, D.3
  • 43
    • 33645217146 scopus 로고    scopus 로고
    • Simulating the collaborative cross: power of quantitative trait loci detection and mapping resolution in large sets of recombinant inbred strains of mice
    • Valdar, W., Flint, J., Mott, R., Simulating the collaborative cross: power of quantitative trait loci detection and mapping resolution in large sets of recombinant inbred strains of mice. Genetics 172 (2006), 1783–1797.
    • (2006) Genetics , vol.172 , pp. 1783-1797
    • Valdar, W.1    Flint, J.2    Mott, R.3
  • 44
    • 84907445035 scopus 로고    scopus 로고
    • Whole-genome analysis of multienvironment or multitrait QTL in MAGIC
    • Verbyla, A.P., Cavanagh, C.R., Verbyla, K.L., Whole-genome analysis of multienvironment or multitrait QTL in MAGIC. G3 (Bethesda) 4 (2014), 1569–1584.
    • (2014) G3 (Bethesda) , vol.4 , pp. 1569-1584
    • Verbyla, A.P.1    Cavanagh, C.R.2    Verbyla, K.L.3
  • 45
    • 0003752712 scopus 로고    scopus 로고
    • Genetic Data Analysis II
    • Sinauer Associates Inc. USA
    • Weir, B.S., Genetic Data Analysis II. 1996, Sinauer Associates Inc., USA.
    • (1996)
    • Weir, B.S.1
  • 46
    • 85006494316 scopus 로고    scopus 로고
    • Genetic mapping of quantitative trait loci in crops
    • Xu, Y., Li, P., Yang, Z., Xu, C., Genetic mapping of quantitative trait loci in crops. Crop J., 2016.
    • (2016) Crop J.
    • Xu, Y.1    Li, P.2    Yang, Z.3    Xu, C.4
  • 47
    • 31744440502 scopus 로고    scopus 로고
    • A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
    • Yu, J., Pressoir, G., Briggs, W.H., Vroh Bi, I., et al. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat. Genet. 38:2 (2006), 203–208.
    • (2006) Nat. Genet. , vol.38 , Issue.2 , pp. 203-208
    • Yu, J.1    Pressoir, G.2    Briggs, W.H.3    Vroh Bi, I.4
  • 48
    • 40849089396 scopus 로고    scopus 로고
    • Genetic design and statistical power of nested association mapping in maize
    • Yu, J., Holland, J.B., McMullen, M.D., Buckler, E.S., Genetic design and statistical power of nested association mapping in maize. Genetics 178:1 (2008), 539–551.
    • (2008) Genetics , vol.178 , Issue.1 , pp. 539-551
    • Yu, J.1    Holland, J.B.2    McMullen, M.D.3    Buckler, E.S.4
  • 49
    • 33846466407 scopus 로고    scopus 로고
    • An Arabidopsis example of association mapping in structured samples
    • Zhao, K., Aranzana, M.J., Kim, S., Lister, C., et al. An Arabidopsis example of association mapping in structured samples. PLoS Genet., 3, 2007, e4.
    • (2007) PLoS Genet. , vol.3
    • Zhao, K.1    Aranzana, M.J.2    Kim, S.3    Lister, C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.