-
1
-
-
84963977870
-
A pan-cancer analysis of prognostic genes
-
Anaya J, Reon B, Chen W-M, Bekiranov S, Dutta A. 2016. A pan-cancer analysis of prognostic genes. PeerJ 3:e1499 DOI 10.7717/peerj.1499.
-
(2016)
PeerJ
, vol.3
-
-
Anaya, J.1
Reon, B.2
Chen, W.-M.3
Bekiranov, S.4
Dutta, A.5
-
2
-
-
84885074034
-
The somatic genomic landscape of glioblastoma
-
Brennan CW, Verhaak RG, McKenna A, Campos B, Noushmehr H, Salama SR, Zheng S, Chakravarty D, Sanborn JZ, Berman SH, Beroukhim R, Bernard B, Wu C-J, Genovese G, Shmulevich I, Barnholtz-Sloan J, Zou L, Vegesna R, Shukla SA, Ciriello G, Yung WK, Zhang W, Sougnez C, Mikkelsen T, Aldape K, Bigner DD, Van Meir EG, Prados M, Sloan A, Black KL, Eschbacher J, Finocchiaro G, Friedman W, Andrews DW, Guha A, Iacocca M, O'Neill BP, Foltz G, Myers J, Weisenberger DJ, Penny R, Kucherlapati R, Perou CM, Hayes DN, Gibbs R, Marra M, Mills GB, Lander E, Spellman P, Wilson R, Sander C, Weinstein J, Meyerson M, Gabriel S, Laird PW, Haussler D, Getz G, Chin L, Network TR. The somatic genomic landscape of glioblastoma. Cell 155(2):462-477 DOI 10.1016/j.cell.2013.09.034.
-
Cell
, vol.155
, Issue.2
, pp. 462-477
-
-
Brennan, C.W.1
Verhaak, R.G.2
McKenna, A.3
Campos, B.4
Noushmehr, H.5
Salama, S.R.6
Zheng, S.7
Chakravarty, D.8
Sanborn, J.Z.9
Berman, S.H.10
Beroukhim, R.11
Bernard, B.12
Wu, C.-J.13
Genovese, G.14
Shmulevich, I.15
Barnholtz-Sloan, J.16
Zou, L.17
Vegesna, R.18
Shukla, S.A.19
Ciriello, G.20
Yung, W.K.21
Zhang, W.22
Sougnez, C.23
Mikkelsen, T.24
Aldape, K.25
Bigner, D.D.26
Van Meir, E.G.27
Prados, M.28
Sloan, A.29
Black, K.L.30
Eschbacher, J.31
Finocchiaro, G.32
Friedman, W.33
Andrews, D.W.34
Guha, A.35
Iacocca, M.36
O'Neill, B.P.37
Foltz, G.38
Myers, J.39
Weisenberger, D.J.40
Penny, R.41
Kucherlapati, R.42
Perou, C.M.43
Hayes, D.N.44
Gibbs, R.45
Marra, M.46
Mills, G.B.47
Lander, E.48
Spellman, P.49
Wilson, R.50
Sander, C.51
Weinstein, J.52
Meyerson, M.53
Gabriel, S.54
Laird, P.W.55
Haussler, D.56
Getz, G.57
Chin, L.58
Network, T.R.59
more..
-
3
-
-
69249115697
-
Cancer-specific high-throughput annotation of somatic mutations: computational prediction of driver missense mutations
-
Carter H, Chen S, Isik L, Tyekucheva S, Velculescu VE, Kinzler KW, Vogelstein B, Karchin R. Cancer-specific high-throughput annotation of somatic mutations: computational prediction of driver missense mutations. Cancer Research 69(16):6660-6667 DOI 10.1158/0008-5472.can-09-1133.
-
Cancer Research
, vol.69
, Issue.16
, pp. 6660-6667
-
-
Carter, H.1
Chen, S.2
Isik, L.3
Tyekucheva, S.4
Velculescu, V.E.5
Kinzler, K.W.6
Vogelstein, B.7
Karchin, R.8
-
4
-
-
84866002291
-
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data
-
Cerami E, Gao J, Dogrusoz U, Gross BE, Sumer SO, Aksoy BA, Jacobsen A, Byrne CJ, Heuer ML, Larsson E, Antipin Y, Reva B, Goldberg AP, Sander C, Schultz N. 2012. The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discovery 2(5):401-404 DOI 10.1158/2159-8290.cd-12-0095.
-
(2012)
Cancer Discovery
, vol.2
, Issue.5
, pp. 401-404
-
-
Cerami, E.1
Gao, J.2
Dogrusoz, U.3
Gross, B.E.4
Sumer, S.O.5
Aksoy, B.A.6
Jacobsen, A.7
Byrne, C.J.8
Heuer, M.L.9
Larsson, E.10
Antipin, Y.11
Reva, B.12
Goldberg, A.P.13
Sander, C.14
Schultz, N.15
-
5
-
-
84925545332
-
Should EGFR mutations be tested in advanced lung squamous cell carcinomas to guide frontline treatment?
-
Chiu C-H, Chou T-Y, Chiang C-L, Tsai C-M. 2014. Should EGFR mutations be tested in advanced lung squamous cell carcinomas to guide frontline treatment? Cancer Chemotherapy and Pharmacology 74(4):661-665 DOI 10.1007/s00280-014-2536-3.
-
(2014)
Cancer Chemotherapy and Pharmacology
, vol.74
, Issue.4
, pp. 661-665
-
-
Chiu, C.-H.1
Chou, T.-Y.2
Chiang, C.-L.3
Tsai, C.-M.4
-
6
-
-
84884997982
-
Emerging landscape of oncogenic signatures across human cancers
-
Ciriello G, Miller ML, Aksoy BA, Senbabaoglu Y, Schultz N, Sander C. 2013. Emerging landscape of oncogenic signatures across human cancers. Nature Genetics 45(10):1127-1133 DOI 10.1038/ng.2762.
-
(2013)
Nature Genetics
, vol.45
, Issue.10
, pp. 1127-1133
-
-
Ciriello, G.1
Miller, M.L.2
Aksoy, B.A.3
Senbabaoglu, Y.4
Schultz, N.5
Sander, C.6
-
7
-
-
84893181929
-
Online survival analysis software to assess the prognostic value of biomarkers using transcriptomic data in non-small-cell lung cancer
-
Gyorffy B, Surowiak P, Budczies J, Lánczky A. 2013. Online survival analysis software to assess the prognostic value of biomarkers using transcriptomic data in non-small-cell lung cancer. PLoS ONE 8(12):e82241 DOI 10.1371/journal.pone.0082241.
-
(2013)
PLoS ONE
, vol.8
, Issue.12
-
-
Gyorffy, B.1
Surowiak, P.2
Budczies, J.3
Lánczky, A.4
-
8
-
-
84903987099
-
The Pan-Cancer analysis of pseudogene expression reveals biologically and clinically relevant tumour subtypes
-
Han L, Yuan Y, Zheng S, Yang Y, Li J, Edgerton ME, Diao L, Xu Y, Verhaak RGW, Liang H. 2014. The Pan-Cancer analysis of pseudogene expression reveals biologically and clinically relevant tumour subtypes. Nature Communications 5:3963 DOI 10.1038/ncomms4963.
-
(2014)
Nature Communications
, vol.5
, pp. 3963
-
-
Han, L.1
Yuan, Y.2
Zheng, S.3
Yang, Y.4
Li, J.5
Edgerton, M.E.6
Diao, L.7
Xu, Y.8
Verhaak, R.G.W.9
Liang, H.10
-
9
-
-
84908460595
-
Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin
-
Hoadley KA, Yau C, Wolf DM, Cherniack AD, Tamborero D, Ng S, Leiserson MDM, Niu B, McLellan MD, Uzunangelov V, Zhang J, Kandoth C, Akbani R, Shen H, Omberg L, Chu A, Margolin AA, Van't Veer LJ, Lopez-Bigas N, Laird PW, Raphael BJ, Ding L, Robertson AG, Byers LA, Mills GB,Weinstein JN, VanWaes C, Chen Z, Collisson EA, Cancer Genome Atlas Research N, Benz CC, Perou CM, Stuart JM. 2014. Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin. Cell 158(4):929-944 DOI 10.1016/j.cell.2014.06.049.
-
(2014)
Cell
, vol.158
, Issue.4
, pp. 929-944
-
-
Hoadley, K.A.1
Yau, C.2
Wolf, D.M.3
Cherniack, A.D.4
Tamborero, D.5
Ng, S.6
Leiserson, M.D.M.7
Niu, B.8
McLellan, M.D.9
Uzunangelov, V.10
Zhang, J.11
Kandoth, C.12
Akbani, R.13
Shen, H.14
Omberg, L.15
Chu, A.16
Margolin, A.A.17
Van't Veer, L.J.18
Lopez-Bigas, N.19
Laird, P.W.20
Raphael, B.J.21
Ding, L.22
Robertson, A.G.23
Byers, L.A.24
Mills, G.B.25
Weinstein, J.N.26
VanWaes, C.27
Chen, Z.28
Collisson, E.A.29
Benz, C.C.30
Perou, C.M.31
Stuart, J.M.32
more..
-
10
-
-
84924063355
-
The landscape of long noncoding RNAs in the human transcriptome
-
Iyer MK, Niknafs YS, Malik R, Singhal U, Sahu A, Hosono Y, Barrette TR, Prensner JR, Evans JR, Zhao S, Poliakov A, Cao X, Dhanasekaran SM, Wu Y-M, Robinson DR, Beer DG, Feng FY, Iyer HK, Chinnaiyan AM. 2015. The landscape of long noncoding RNAs in the human transcriptome. Nature Genetics 47(3):199-208 DOI 10.1038/ng.3192.
-
(2015)
Nature Genetics
, vol.47
, Issue.3
, pp. 199-208
-
-
Iyer, M.K.1
Niknafs, Y.S.2
Malik, R.3
Singhal, U.4
Sahu, A.5
Hosono, Y.6
Barrette, T.R.7
Prensner, J.R.8
Evans, J.R.9
Zhao, S.10
Poliakov, A.11
Cao, X.12
Dhanasekaran, S.M.13
Wu, Y.-M.14
Robinson, D.R.15
Beer, D.G.16
Feng, F.Y.17
Iyer, H.K.18
Chinnaiyan, A.M.19
-
11
-
-
34547566118
-
CanPredict: a computational tool for predicting cancer-associated missense mutations
-
Kaminker JS, Zhang Y, Watanabe C, Zhang Z. 2007. CanPredict: a computational tool for predicting cancer-associated missense mutations. Nucleic Acids Research 35(suppl 2): W595-W598 DOI 10.1093/nar/gkm405.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. W595-W598
-
-
Kaminker, J.S.1
Zhang, Y.2
Watanabe, C.3
Zhang, Z.4
-
12
-
-
84940204580
-
MEXPRESS: visualizing expression, DNA methylation and clinical TCGA data
-
Koch A, De Meyer T, Jeschke J, Van Criekinge W. 2015. MEXPRESS: visualizing expression, DNA methylation and clinical TCGA data. BMC Genomics 16(1):636 DOI 10.1186/s12864-015-1847-z.
-
(2015)
BMC Genomics
, vol.16
, Issue.1
, pp. 636
-
-
Koch, A.1
De Meyer, T.2
Jeschke, J.3
Van Criekinge, W.4
-
13
-
-
85013297508
-
Bioinformatic interrogation of 5p-arm and 3p-arm specific miRNA expression using TCGA datasets
-
Kuo W-T, Su M-W, Lee YL, Chen C-H, Wu C-W, Fang W-L, Huang K-H, Lin W-C. 2015. Bioinformatic interrogation of 5p-arm and 3p-arm specific miRNA expression using TCGA datasets. Journal of Clinical Medicine 4(9): 1798-1814 DOI 10.3390/jcm4091798.
-
(2015)
Journal of Clinical Medicine
, vol.4
, Issue.9
, pp. 1798-1814
-
-
Kuo, W.-T.1
Su, M.-W.2
Lee, Y.L.3
Chen, C.-H.4
Wu, C.-W.5
Fang, W.-L.6
Huang, K.-H.7
Lin, W.-C.8
-
14
-
-
84942909779
-
TANRIC: an interactive open platform to explore the function of lncRNAs in cancer
-
Li J, Han L, Roebuck P, Diao L, Liu L, Yuan Y, Weinstein JN, Liang H. 2015. TANRIC: an interactive open platform to explore the function of lncRNAs in cancer. Cancer Research 75(18):3728-3737 DOI 10.1158/0008-5472.can-15-0273.
-
(2015)
Cancer Research
, vol.75
, Issue.18
, pp. 3728-3737
-
-
Li, J.1
Han, L.2
Roebuck, P.3
Diao, L.4
Liu, L.5
Yuan, Y.6
Weinstein, J.N.7
Liang, H.8
-
15
-
-
0034680102
-
Molecular portraits of human breast tumours
-
Perou CM, Sørlie T, Eisen MB, van de Rijn M, Jeffrey SS, Rees CA, Pollack JR, Ross DT, Johnsen H, Akslen LA, Fluge Ø, Pergamenschikov A, Williams C, Zhu SX, Lønning PE, Børresen-Dale AL, Brown PO, Botstein D. 2000. Molecular portraits of human breast tumours. Nature 406(6797):747-752 DOI 10.1038/35021093.
-
(2000)
Nature
, vol.406
, Issue.6797
, pp. 747-752
-
-
Perou, C.M.1
Sørlie, T.2
Eisen, M.B.3
van de Rijn, M.4
Jeffrey, S.S.5
Rees, C.A.6
Pollack, J.R.7
Ross, D.T.8
Johnsen, H.9
Akslen, L.A.10
Fluge, Ø.11
Pergamenschikov, A.12
Williams, C.13
Zhu, S.X.14
Lønning, P.E.15
Børresen-Dale, A.L.16
Brown, P.O.17
Botstein, D.18
-
16
-
-
84947721184
-
Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results
-
Rahman M, Jackson LK, Johnson WE, Li DY, Bild AH, Piccolo SR. 2015. Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results. Bioinformatics 31(22):3666-3672 DOI 10.1093/bioinformatics/btv377.
-
(2015)
Bioinformatics
, vol.31
, Issue.22
, pp. 3666-3672
-
-
Rahman, M.1
Jackson, L.K.2
Johnson, W.E.3
Li, D.Y.4
Bild, A.H.5
Piccolo, S.R.6
-
17
-
-
84893867792
-
Gene co-expression network analysis reveals common system-level properties of prognostic genes across cancer types
-
Yang Y, Han L, Yuan Y, Li J, Hei N, Liang H. 2014. Gene co-expression network analysis reveals common system-level properties of prognostic genes across cancer types. Nature Communications 5:3231 DOI 10.1038/ncomms4231.
-
(2014)
Nature Communications
, vol.5
, pp. 3231
-
-
Yang, Y.1
Han, L.2
Yuan, Y.3
Li, J.4
Hei, N.5
Liang, H.6
-
18
-
-
84927157577
-
Long noncoding RNAs: a potential novel class of cancer biomarkers
-
Yarmishyn AA, Kurochkin IV. 2015. Long noncoding RNAs: a potential novel class of cancer biomarkers. Front Genet 6:145 DOI 10.3389/fgene.2015.00145.
-
(2015)
Front Genet
, vol.6
, pp. 145
-
-
Yarmishyn, A.A.1
Kurochkin, I.V.2
-
19
-
-
78651439545
-
Identifying cancer driver genes in tumor genome sequencing studies
-
Youn A, Simon R. 2011. Identifying cancer driver genes in tumor genome sequencing studies. Bioinformatics 27(2):175-181 DOI 10.1093/bioinformatics/btq630.
-
(2011)
Bioinformatics
, vol.27
, Issue.2
, pp. 175-181
-
-
Youn, A.1
Simon, R.2
|