메뉴 건너뛰기




Volumn 45, Issue W1, 2017, Pages W154-W161

GWAB: A web server for the network-based boosting of human genome-wide association data

Author keywords

[No Author keywords available]

Indexed keywords

ALZHEIMER DISEASE; AREA UNDER THE CURVE; ARTICLE; BENCHMARKING; CORONARY ARTERY DISEASE; CROHN DISEASE; DISEASE ASSOCIATED GENE; DISEASE ASSOCIATION; FALSE POSITIVE RATE; FEASIBILITY STUDY; GENE; GENETIC ASSOCIATION; GENETIC DATABASE; GENOME-WIDE ASSOCIATION STUDY; HUMAN; INFORMATION RETRIEVAL; NON INSULIN DEPENDENT DIABETES MELLITUS; ONLINE SYSTEM; PARAMETERS; PRIORITY JOURNAL; PROBABILITY; PROCESS DESIGN; RECEIVER OPERATING CHARACTERISTIC; REFERENCE VALUE; RHEUMATOID ARTHRITIS; SCHIZOPHRENIA; SINGLE NUCLEOTIDE POLYMORPHISM; SOFTWARE; ULCERATIVE COLITIS; VALIDATION PROCESS; WEB BASED SERVICE DESIGN; WEB SERVER; ESSENTIAL GENE; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORK; GENETICS; HUMAN GENOME; INTERNET; METABOLISM; PATHOLOGY; SAMPLE SIZE; STATISTICAL ANALYSIS;

EID: 85023205647     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkx284     Document Type: Article
Times cited : (29)

References (41)
  • 2
    • 77951702343 scopus 로고    scopus 로고
    • Genetic heterogeneity in human disease
    • McClellan, J., and King, M. C. (2010). Genetic heterogeneity in human disease. Cell, 141, 210-217.
    • (2010) Cell , vol.141 , pp. 210-217
    • McClellan, J.1    King, M.C.2
  • 4
    • 84893174522 scopus 로고    scopus 로고
    • Network.assisted analysis to prioritize GWAS results: Principles methods and perspectives
    • Jia, P., and Zhao, Z. (2014). Network.assisted analysis to prioritize GWAS results: principles, methods and perspectives. Hum. Genet, 133, 125-138.
    • (2014) Hum. Genet , vol.133 , pp. 125-138
    • Jia, P.1    Zhao, Z.2
  • 5
    • 0000801240 scopus 로고    scopus 로고
    • Discovering regulatory and signalling circuits in molecular interaction networks
    • Ideker, T., Ozier, O., Schwikowski, B., and Siegel, A. F. (2002). Discovering regulatory and signalling circuits in molecular interaction networks. Bioinformatics, 18(Suppl. 1), S233-S240.
    • (2002) Bioinformatics , vol.18 , pp. S233-S240
    • Ideker, T.1    Ozier, O.2    Schwikowski, B.3    Siegel, A.F.4
  • 6
    • 78650562728 scopus 로고    scopus 로고
    • DmGWAS: Dense module searching for genome-wide association studies in protein-protein interaction networks
    • Jia, P., Zheng, S., Long, J., Zheng, W., and Zhao, Z. (2011). dmGWAS: dense module searching for genome-wide association studies in protein-protein interaction networks. Bioinformatics, 27, 95-102.
    • (2011) Bioinformatics , vol.27 , pp. 95-102
    • Jia, P.1    Zheng, S.2    Long, J.3    Zheng, W.4    Zhao, Z.5
  • 8
    • 80055031911 scopus 로고    scopus 로고
    • A new methodology to associate SNPs with human diseases according to their pathway related context
    • Bakir-Gungor, B., and Sezerman, O. U. (2011). A new methodology to associate SNPs with human diseases according to their pathway related context. PLoS One, 6, e26277.
    • (2011) PLoS One , vol.6 , pp. e26277
    • Bakir-Gungor, B.1    Sezerman, O.U.2
  • 9
    • 79851502150 scopus 로고    scopus 로고
    • Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology
    • Rossin, E. J., Lage, K., Raychaudhuri, S., Xavier, R. J., Tatar, D., Benita, Y., Cotsapas, C., Daly, M. J., and Genetic, I. I. B. D. (2011). Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology. PLoS Genet, 7, e1001273.
    • (2011) PLoS Genet , vol.7 , pp. e1001273
    • Rossin, E.J.1    Lage, K.2    Raychaudhuri, S.3    Xavier, R.J.4    Tatar, D.5    Benita, Y.6    Cotsapas, C.7    Daly, M.J.8    Genetic, I.I.B.D.9
  • 11
    • 84926147304 scopus 로고    scopus 로고
    • Selecting causal genes from genome-wide association studies via functionally coherent subnetworks
    • Tasan, M., Musso, G., Hao, T., Vidal, M., MacRae, C. A., and Roth, F. P. (2015). Selecting causal genes from genome-wide association studies via functionally coherent subnetworks. Nat. Methods, 12, 154-159.
    • (2015) Nat. Methods , vol.12 , pp. 154-159
    • Tasan, M.1    Musso, G.2    Hao, T.3    Vidal, M.4    MacRae, C.A.5    Roth, F.P.6
  • 12
    • 79959898376 scopus 로고    scopus 로고
    • Prioritizing candidate disease genes by network-based boosting of genome-wide association data
    • Lee, I., Blom, U. M., Wang, P. I., Shim, J. E., and Marcotte, E. M. (2011). Prioritizing candidate disease genes by network-based boosting of genome-wide association data. Genome Res, 21, 1109-1121.
    • (2011) Genome Res , vol.21 , pp. 1109-1121
    • Lee, I.1    Blom, U.M.2    Wang, P.I.3    Shim, J.E.4    Marcotte, E.M.5
  • 15
    • 9444239213 scopus 로고    scopus 로고
    • A probabilistic functional network of yeast genes
    • Lee, I., Date, S. V., Adai, A. T., and Marcotte, E. M. (2004). A probabilistic functional network of yeast genes. Science, 306, 1555-1558.
    • (2004) Science , vol.306 , pp. 1555-1558
    • Lee, I.1    Date, S.V.2    Adai, A.T.3    Marcotte, E.M.4
  • 23
    • 58149189856 scopus 로고    scopus 로고
    • Mckusick?s online mendelian inheritance in man (omim®
    • Amberger, J., Bocchini, C. A., Scott, A. F., and Hamosh, A. (2009). McKusick?s Online Mendelian Inheritance in Man (OMIM®). Nucleic Acids Res, 37, D793-D796.
    • (2009) Nucleic Acids Res , vol.37 , pp. D793-D796
    • Amberger, J.1    Bocchini, C.A.2    Scott, A.F.3    Hamosh, A.4
  • 24
    • 84941103725 scopus 로고    scopus 로고
    • Disease Ontology 2015 update: An expanded and updated database of human diseases for linking biomedical knowledge through disease data
    • Kibbe, W. A., Arze, C., Felix, V., Mitraka, E., Bolton, E., Fu, G., Mungall, C. J., Binder, J. X., Malone, J., Vasant, D., et al. (2015). Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data. Nucleic Acids Res, 43, D1071-D1078.
    • (2015) Nucleic Acids Res , vol.43 , pp. D1071-D1078
    • Kibbe, W.A.1    Arze, C.2    Felix, V.3    Mitraka, E.4    Bolton, E.5    Fu, G.6    Mungall, C.J.7    Binder, J.X.8    Malone, J.9    Vasant, D.10
  • 27
    • 46249104490 scopus 로고    scopus 로고
    • Systematic meta-Analyses and field synopsis of genetic association studies in schizophrenia: The SzGene database
    • Allen, N. C., Bagade, S., McQueen, M. B., Ioannidis, J. P. A., Kavvoura, F. K., Khoury, M. J., Tanzi, R. E., and Bertram, L. (2008). Systematic meta-Analyses and field synopsis of genetic association studies in schizophrenia: the SzGene database. Nat. Genet, 40, 827-834.
    • (2008) Nat. Genet , vol.40 , pp. 827-834
    • Allen, N.C.1    Bagade, S.2    McQueen, M.B.3    Ioannidis, J.P.A.4    Kavvoura, F.K.5    Khoury, M.J.6    Tanzi, R.E.7    Bertram, L.8
  • 28
    • 78650621040 scopus 로고    scopus 로고
    • Type 2 diabetes genetic association database manually curated for the study design and odds ratio
    • Lim, J. E., Hong, K. W., Jin, H. S., Kim, Y. S., Park, H. K., and Oh, B. (2010). Type 2 diabetes genetic association database manually curated for the study design and odds ratio. BMC Med. Inform. Decis. Mak, 10, 76.
    • (2010) BMC Med. Inform. Decis. Mak , vol.10 , pp. 76
    • Lim, J.E.1    Hong, K.W.2    Jin, H.S.3    Kim, Y.S.4    Park, H.K.5    Oh, B.6
  • 29
    • 84923884337 scopus 로고    scopus 로고
    • DISEASES: Text mining and data integration of disease-gene associations
    • Pletscher-Frankild, S., Palleja, A., Tsafou, K., Binder, J. X., and Jensen, L. J. (2015). DISEASES: text mining and data integration of disease-gene associations. Methods, 74, 83-89.
    • (2015) Methods , vol.74 , pp. 83-89
    • Pletscher-Frankild, S.1    Palleja, A.2    Tsafou, K.3    Binder, J.X.4    Jensen, L.J.5
  • 30
    • 54249106249 scopus 로고    scopus 로고
    • The novel genetic variant predisposing to coronary artery disease in the region of the PSRC1 and CELSR2 genes on chromosome 1 associates with serum cholesterol
    • Samani, N. J., Braund, P. S., Erdmann, J., Gotz, A., Tomaszewski, M., Linsel-Nitschke, P., Hajat, C., Mangino, M., Hengstenberg, C., Stark, K., et al. (2008). The novel genetic variant predisposing to coronary artery disease in the region of the PSRC1 and CELSR2 genes on chromosome 1 associates with serum cholesterol. J. Mol. Med, 86, 1233-1241.
    • (2008) J. Mol. Med , vol.86 , pp. 1233-1241
    • Samani, N.J.1    Braund, P.S.2    Erdmann, J.3    Gotz, A.4    Tomaszewski, M.5    Linsel-Nitschke, P.6    Hajat, C.7    Mangino, M.8    Hengstenberg, C.9    Stark, K.10
  • 31
    • 84899629453 scopus 로고    scopus 로고
    • BRG1 variant rs1122608 on chromosome 19p13.2 confers protection against stroke and regulates expression of pre-mRNA-splicing factor SFRS3
    • Xiong, X., Xu, C., Zhang, Y., Li, X., Wang, B., Wang, F., Yang, Q., Wang, D., Wang, X., Li, S., et al. (2014). BRG1 variant rs1122608 on chromosome 19p13.2 confers protection against stroke and regulates expression of pre-mRNA-splicing factor SFRS3. Hum. Gen, 133, 499-508.
    • (2014) Hum. Gen , vol.133 , pp. 499-508
    • Xiong, X.1    Xu, C.2    Zhang, Y.3    Li, X.4    Wang, B.5    Wang, F.6    Yang, Q.7    Wang, D.8    Wang, X.9    Li, S.10
  • 34
    • 84875965125 scopus 로고    scopus 로고
    • Analysis of a gene co-expression network establishes robust association between Col5a2 and ischemic heart disease
    • Azuaje, F., Zhang, L., Jeanty, C., Puhl, S. L., Rodius, S., and Wagner, D. R. (2013). Analysis of a gene co-expression network establishes robust association between Col5a2 and ischemic heart disease. BMC Med. Genomics, 6, 13.
    • (2013) BMC Med. Genomics , vol.6 , pp. 13
    • Azuaje, F.1    Zhang, L.2    Jeanty, C.3    Puhl, S.L.4    Rodius, S.5    Wagner, D.R.6
  • 35
    • 84929320827 scopus 로고    scopus 로고
    • Association between phosphatase related gene variants and coronary artery disease: Case-control study and meta-Analysis
    • Han, X., Zhang, L. J., Zhang, Z. Q., Zhang, Z. T., Wang, J. C., Yang, J., and Niu, J. M. (2014). Association between phosphatase related gene variants and coronary artery disease: case-control study and meta-Analysis. Int. J. Mol. Sci, 15, 14058-14076.
    • (2014) Int. J. Mol. Sci , vol.15 , pp. 14058-14076
    • Han, X.1    Zhang, L.J.2    Zhang, Z.Q.3    Zhang, Z.T.4    Wang, J.C.5    Yang, J.6    Niu, J.M.7
  • 38
    • 0035749892 scopus 로고    scopus 로고
    • Caldesmon and smooth-muscle regulation
    • Wang, C. L. (2001). Caldesmon and smooth-muscle regulation. Cell Biochem. Biophys, 35, 275-288.
    • (2001) Cell Biochem. Biophys , vol.35 , pp. 275-288
    • Wang, C.L.1
  • 39
    • 0037133220 scopus 로고    scopus 로고
    • Fibrillin-1 genotype is associated with aortic stiffness and disease severity in patients with coronary artery disease
    • Medley, T. L., Cole, T. J., Gatzka, C. D., Wang, W. Y., Dart, A. M., and Kingwell, B. A. (2002). Fibrillin-1 genotype is associated with aortic stiffness and disease severity in patients with coronary artery disease. Circulation, 105, 810-815.
    • (2002) Circulation , vol.105 , pp. 810-815
    • Medley, T.L.1    Cole, T.J.2    Gatzka, C.D.3    Wang, W.Y.4    Dart, A.M.5    Kingwell, B.A.6
  • 41
    • 79958128614 scopus 로고    scopus 로고
    • Soluble guanylate cyclase as an emerging therapeutic target in cardiopulmonary disease
    • Stasch, J. P., Pacher, P., and Evgenov, O. V. (2011). Soluble guanylate cyclase as an emerging therapeutic target in cardiopulmonary disease. Circulation, 123, 2263-2273.
    • (2011) Circulation , vol.123 , pp. 2263-2273
    • Stasch, J.P.1    Pacher, P.2    Evgenov, O.V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.