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Volumn 19, Issue 5, 2017, Pages 575-582

A survey of current practices for genomic sequencing test interpretation and reporting processes in US laboratories

(38)  O'Daniel, Julianne M a   McLaughlin, Heather M b   Amendola, Laura M c   Bale, Sherri J d   Berg, Jonathan S a   Bick, David e   Bowling, Kevin M f   Chao, Elizabeth C g,h   Chung, Wendy K i   Conlin, Laura K j   Cooper, Gregory M f   Das, Soma k   Deignan, Joshua L l   Dorschner, Michael O m   Evans, James P a   Ghazani, Arezou A n   Goddard, Katrina A o   Gornick, Michele p   Farwell Hagman, Kelly D g   Hambuch, Tina q   more..


Author keywords

clinical reporting; exome sequencing; genetic testing; genome sequencing; laboratory standards

Indexed keywords

CASE REPORT; CASE STUDY; CONSENSUS DEVELOPMENT; DOCUMENTATION; FEMALE; FOLLOW UP; GENETIC SCREENING; HUMAN; INTERVIEW; MALE; STANDARDIZATION; WHOLE EXOME SEQUENCING; WORKFLOW; DNA SEQUENCE; ETHICS; INCIDENTAL FINDING; INFORMATION DISSEMINATION; INTERPERSONAL COMMUNICATION; LABORATORY; PRACTICE GUIDELINE; PROCEDURES; QUESTIONNAIRE; RESEARCH; SAMPLE SIZE; STANDARDS;

EID: 85021701521     PISSN: 10983600     EISSN: 15300366     Source Type: Journal    
DOI: 10.1038/gim.2016.152     Document Type: Article
Times cited : (67)

References (22)
  • 1
    • 84977142736 scopus 로고    scopus 로고
    • Clinical application of whole-exome sequencing across clinical indications
    • Retterer K, Juusola J, Cho MT, et al. Clinical application of whole-exome sequencing across clinical indications. Genet Med 2016;18:696-704.
    • (2016) Genet Med , vol.18 , pp. 696-704
    • Retterer, K.1    Juusola, J.2    Cho, M.T.3
  • 2
    • 84918771753 scopus 로고    scopus 로고
    • Molecular findings among patients referred for clinical whole-exome sequencing
    • Yang Y, Muzny DM, Xia F, et al. Molecular findings among patients referred for clinical whole-exome sequencing. JAMA 2014;312:1870-1879.
    • (2014) JAMA , vol.312 , pp. 1870-1879
    • Yang, Y.1    Muzny, D.M.2    Xia, F.3
  • 3
    • 84918840439 scopus 로고    scopus 로고
    • Clinical exome sequencing for genetic identification of rare mendelian disorders
    • Lee H, Deignan JL, Dorrani N, et al. Clinical exome sequencing for genetic identification of rare Mendelian disorders. JAMA 2014;312:1880-1887.
    • (2014) JAMA , vol.312 , pp. 1880-1887
    • Lee, H.1    Deignan, J.L.2    Dorrani, N.3
  • 4
    • 84928528797 scopus 로고    scopus 로고
    • Whole-genome sequencing is more powerful than whole-exome sequencing for detecting exome variants
    • Belkadi A, Bolze A, Itan Y, et al. Whole-genome sequencing is more powerful than whole-exome sequencing for detecting exome variants. Proc Natl Acad Sci USA 2015;112:5473-5478.
    • (2015) Proc Natl Acad Sci USA , vol.112 , pp. 5473-5478
    • Belkadi, A.1    Bolze, A.2    Itan, Y.3
  • 6
    • 84859561085 scopus 로고    scopus 로고
    • Taxonomizing, sizing, and overcoming the incidentalome
    • Kohane IS, Hsing M, Kong SW. Taxonomizing, sizing, and overcoming the incidentalome. Genet Med 2012;14:399-404.
    • (2012) Genet Med , vol.14 , pp. 399-404
    • Kohane, I.S.1    Hsing, M.2    Kong, S.W.3
  • 7
    • 84923928478 scopus 로고    scopus 로고
    • A systematic approach to the reporting of medically relevant findings from whole genome sequencing
    • MedSeq Project
    • McLaughlin HM, Ceyhan-Birsoy O, Christensen KD, et al.; MedSeq Project. A systematic approach to the reporting of medically relevant findings from whole genome sequencing. BMC Med Genet 2014;15:134.
    • (2014) BMC Med Genet , vol.15 , pp. 134
    • McLaughlin, H.M.1    Ceyhan-Birsoy, O.2    Christensen, K.D.3
  • 8
    • 84943587934 scopus 로고    scopus 로고
    • Good laboratory practice for clinical nextgeneration sequencing informatics pipelines
    • Gargis AS, Kalman L, Bick DP, et al. Good laboratory practice for clinical nextgeneration sequencing informatics pipelines. Nat Biotechnol 2015;33:689-693.
    • (2015) Nat Biotechnol , vol.33 , pp. 689-693
    • Gargis, A.S.1    Kalman, L.2    Bick, D.P.3
  • 9
    • 84928209346 scopus 로고    scopus 로고
    • Standards and guidelines for the interpretation of sequence variants: A joint consensus recommendation of the American college of medical genetics and genomics and the association for molecular pathology
    • ACMG Laboratory Quality Assurance Committee
    • Richards S, Aziz N, Bale S, et al.; ACMG Laboratory Quality Assurance Committee. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med 2015;17:405-424.
    • (2015) Genet Med , vol.17 , pp. 405-424
    • Richards, S.1    Aziz, N.2    Bale, S.3
  • 10
    • 84883897500 scopus 로고    scopus 로고
    • Acmg clinical laboratory standards for next-generation sequencing
    • Working Group of the American College of Medical Genetics and Genomics Laboratory Quality Assurance Commitee
    • Rehm HL, Bale SJ, Bayrak-Toydemir P, et al.; Working Group of the American College of Medical Genetics and Genomics Laboratory Quality Assurance Commitee. ACMG clinical laboratory standards for next-generation sequencing. Genet Med 2013;15:733-747.
    • (2013) Genet Med , vol.15 , pp. 733-747
    • Rehm, H.L.1    Bale, S.J.2    Bayrak-Toydemir, P.3
  • 11
    • 84899476119 scopus 로고    scopus 로고
    • Guidelines for investigating causality of sequence variants in human disease
    • MacArthur DG, Manolio TA, Dimmock DP, et al. Guidelines for investigating causality of sequence variants in human disease. Nature 2014;508: 469-476.
    • (2014) Nature , vol.508 , pp. 469-476
    • MacArthur, D.G.1    Manolio, T.A.2    Dimmock, D.P.3
  • 12
    • 84880535720 scopus 로고    scopus 로고
    • Acmg recommendations for reporting of incidental findings in clinical exome and genome sequencing
    • American College of Medical Genetics and Genomics
    • Green RC, Berg JS, Grody WW, et al.; American College of Medical Genetics and Genomics. ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing. Genet Med 2013;15: 565-574.
    • (2013) Genet Med , vol.15 , pp. 565-574
    • Green, R.C.1    Berg, J.S.2    Grody, W.W.3
  • 13
    • 84887474444 scopus 로고    scopus 로고
    • Processes and preliminary outputs for identification of actionable genes as incidental findings in genomic sequence data in the clinical sequencing exploratory research consortium
    • Members of the CSER Actionability and Return of Results Working Group
    • Berg JS, Amendola LM, Eng C, et al.; Members of the CSER Actionability and Return of Results Working Group. Processes and preliminary outputs for identification of actionable genes as incidental findings in genomic sequence data in the Clinical Sequencing Exploratory Research Consortium. Genet Med 2013;15:860-867.
    • (2013) Genet Med , vol.15 , pp. 860-867
    • Berg, J.S.1    Amendola, L.M.2    Eng, C.3
  • 14
    • 84897960893 scopus 로고    scopus 로고
    • Clia program and hipaa privacy rule: Patients' access to test reports.final rule
    • US Dept of Health and Human Services, Center for Medicare & Medicaid
    • US Dept of Health and Human Services, Center for Medicare & Medicaid. CLIA program and HIPAA privacy rule: patients' access to test reports.Final rule. Fed Regist 2014;79:7289-316.
    • (2014) Fed Regist , vol.79 , pp. 7289-7316
  • 15
    • 84908879578 scopus 로고    scopus 로고
    • Regulatory changes raise troubling questions for genomic testing
    • Evans BJ, Dorschner MO, Burke W, Jarvik GP. Regulatory changes raise troubling questions for genomic testing. Genet Med 2014;16:799-803.
    • (2014) Genet Med , vol.16 , pp. 799-803
    • Evans, B.J.1    Dorschner, M.O.2    Burke, W.3    Jarvik, G.P.4
  • 16
    • 84965181241 scopus 로고    scopus 로고
    • An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the clarity challenge
    • Brownstein CA, Beggs AH, Homer N, et al. An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. Genome Biol 2014;15:R53.
    • (2014) Genome Biol , vol.15 , pp. R53
    • Brownstein, C.A.1    Beggs, A.H.2    Homer, N.3
  • 17
    • 84923872701 scopus 로고    scopus 로고
    • Actionable exomic incidental findings in 6503 participants: Challenges of variant classification
    • Amendola LM, Dorschner MO, Robertson PD, et al. Actionable exomic incidental findings in 6503 participants: challenges of variant classification. Genome Res 2015;25:305-315.
    • (2015) Genome Res , vol.25 , pp. 305-315
    • Amendola, L.M.1    Dorschner, M.O.2    Robertson, P.D.3
  • 18
    • 84903284152 scopus 로고    scopus 로고
    • Assessing the necessity of confirmatory testing for exome-sequencing results in a clinical molecular diagnostic laboratory
    • Strom SP, Lee H, Das K, et al. Assessing the necessity of confirmatory testing for exome-sequencing results in a clinical molecular diagnostic laboratory. Genet Med 2014;16:510-515.
    • (2014) Genet Med , vol.16 , pp. 510-515
    • Strom, S.P.1    Lee, H.2    Das, K.3
  • 20
    • 84962374976 scopus 로고    scopus 로고
    • Nisc comparative sequencing program systematic evaluation of sanger validation of next-generation sequencing variants
    • Beck TF, Mullikin JC, Biesecker LG; NISC Comparative Sequencing Program. Systematic evaluation of Sanger validation of next-generation sequencing variants. Clin Chem 2016;62:647-654.
    • (2016) Clin Chem , vol.62 , pp. 647-654
    • Beck, T.F.1    Mullikin, J.C.2    Biesecker, L.G.3
  • 21
    • 84907875064 scopus 로고    scopus 로고
    • Clinical integration of next generation sequencing: Coverage and reimbursement challenges
    • Deverka PA, Dreyfus JC. Clinical integration of next generation sequencing: coverage and reimbursement challenges. J Law Med Ethics 2014;42 Suppl 1: 22-41.
    • (2014) J Law Med Ethics , vol.42 , pp. 22-41
    • Deverka, P.A.1    Dreyfus, J.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.