A short history and description of Drosophila melanogaster classical genetics: Chromosome aberrations, forward genetic screens, and the nature of mutations

Genetics

Volumn 206, Issue 2, 2017, Pages 665-689

  Kaufman, Thomas C ^a  

^a INDIANA UNIVERSITY   (United States)

Author keywords

Balancers; Chromosome aberrations; FlyBook; Genome; Screens

Indexed keywords

LONG UNTRANSLATED RNA; MICRORNA; MUTAGENIC AGENT; RIBOSOME RNA; SMALL NUCLEAR RNA; SMALL NUCLEOLAR RNA; TRANSFER RNA;

ARTICLE; AUTOSOME; CHROMATID EXCHANGE; CHROMOSOME ABERRATION; CHROMOSOME ARM; CHROMOSOME MAP; CHROMOSOME STRUCTURE; CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEAT; DROSOPHILA MELANOGASTER; EXON; GAMETE; GENE EDITING; GENE LOCUS; GENE MAPPING; GENE MUTATION; GENE TRANSLOCATION; GENETIC CODE; GENOMIC FRAGMENT; HETEROCHROMATIN; INSECT GENOME; MITOCHONDRIAL GENOME; MUTAGENESIS; NONHUMAN; OPEN READING FRAME; PLOIDY; POLYTENE CHROMOSOME; PRIORITY JOURNAL; PROGENY; PSEUDOGENE; STOP CODON; TELOMERE; TRANSPOSON; X CHROMOSOME; Y CHROMOSOME; ANIMAL; GENETICS; HISTORY; MIOSIS; MUTATION; SCIENCE;

ANIMALS; CHROMOSOME ABERRATIONS; DROSOPHILA MELANOGASTER; GENOME, INSECT; HISTORY, 20TH CENTURY; HISTORY, 21ST CENTURY; MIOSIS; MUTATION; SCIENCE;

EID: 85020639941     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.117.199950     Document Type: Article

References (74)

1. Adams, M. D., S. E. Celniker, R. A. Holt, C. A. Evans, J. D. Gocayne et al., 2000 The genome sequence of Drosophila melanogaster. Science 287: 2185-2195.
2. Ashburner, M., K. G. Golic, and R. S. Hawley, 2005 Drosophila: A Laboratory Handbook, Ed. 2. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. pp. 1408.
3. Auerbach, C., and J. M. Robson, 1946 Chemical production of mutations. Nature 157: 302.
4. Auerbach, C., J. M. Robson, and J. G. Carr, 1947 The chemical production of mutations. Science 105: 243-247.
5. Bassett, A., and J. L. Liu, 2014 CRISPR/Cas9 mediated genome engineering in Drosophila. Methods 69: 128-136.
6. Bassett, A. R., C. Tibbit, C. P. Ponting, and J. L. Liu, 2013 Highly efficient targeted mutagenesis of Drosophila with the CRISPR/Cas9 system. Cell Rep. 4: 220-228.
7. Beumer, K. J., and D. Carroll, 2014 Targeted genome engineering techniques in Drosophila. Methods 68: 29-37.
8. Boley, N., M. H. Stoiber, B.W. Booth, K. H. Wan, R. A. Hoskins et al., 2014 Genome-guided transcript assembly by integrative analysis of RNA sequence data. Nat. Biotechnol. 32: 341-346.
9. Bridges, C. B., 1935 Salivary chromosome maps with a key to the banding of the chromosomes of Drosophila melanogaster. J. Hered. 26: 60-64.
10. Brosseau, G. E., 1960 Genetic analysis of the male fertility factors on the Y chromosome of Drosophila melanogaster. Genetics 45: 257-274.
11. Brown, J. B., N. Boley, R. Eisman, G. E. May, M. H. Stoiber et al., 2014 Diversity and dynamics of the Drosophila transcriptome. Nature 512: 393-399.
12. Chen, Z. X., D. Sturgill, J. Qu, H. Jiang, S. Park et al., 2014 Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 24: 1209-1223.
13. Cherbas, L., A. Willingham, D. Zhang, L. Yang, Y. Zou et al., 2011 The transcriptional diversity of 25 Drosophila cell lines. Genome Res. 21: 301-314.
14. Cook, R. K., M. E. Deal, J. A. Deal, R. D. Garton, C. A. Brown et al., 2010 A new resource for characterizing X-linked genes in Drosophila melanogaster: systematic coverage and subdivision of the X chromosome with nested, Y-linked duplications. Genetics 186: 1095-1109.
15. Coulthard, A. B., C. Alm, I. Cealiac, D. A. Sinclair, B. M. Honda et al., 2010 Essential loci in centromeric heterochromatin of Drosophila melanogaste. I: the right arm of chromosome 2. Genetics 185: 479-495.
16. de Carvalho, A. B., B. P. Lazzaro, and A. G. Clark, 2000 Y chromosomal fertility factors kl-2 and kl-3 of Drosophila melanogaster encode dynein heavy chain polypeptides. Proc. Natl. Acad. Sci. USA 97: 13239-13244.
17. de Carvalho, A. B., B. A. Dobo, M. D. Vibranovski, and A. G. Clark, 2001 Identification of five new genes on the Y chromosome of Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 98: 13225-13230.
18. de Carvalho, A. B., M. D. Vibranovski, J. W. Carlson, S. E. Celniker, R. A. Hoskins et al., 2003 Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go? Genetica 117: 227-237.
19. Deng, Q., Q. Zeng, Y. Qian, C. Li, and Y. Yang, 2007 Research on the karyotype and evolution of Drosophila melanogaster species group. J. Genet. Genomics 34: 196-213.
20. Dimitri, P., 1991 Cytogenetic analysis of the second chromosome heterochromatin of Drosophila melanogaster. Genetics 127: 553-564.
21. Dimitri, P., 1997 Constitutive heterochromatin and transposable elements in Drosophila melanogaster. Genetica 100: 85-93.
22. Dimitri, P., N. Corradini, F. Rossi, F. Verni, G. Cenci et al., 2003 Vital genes in the heterochromatin of chromosomes 2 and 3 of Drosophila melanogaster. Genetica 117(2-3): 209-215.
23. Dimitri, P., R. Caizzi, E. Giordano, M. Carmela Accardo, G. Lattanzi et al., 2009 Constitutive heterochromatin: a surprising variety of expressed sequences. Chromosoma 118: 419-435.
24. Gatti, M., and S. Pimpinelli, 1983 Cytological and genetic analysis of the Y chromosome of Drosophila melanogaster. Chromosoma 88: 349-373.
25. Gatti, M., and S. Pimpinelli, 1992 Functional elements in Drosophila melanogaster heterochromatin. Annu. Rev. Genet. 26: 239-275.
26. Gatti, M., S. Pimpinelli, and G. Santini, 1976 Characterization of Drosophila heterochromatin. Chromosoma 57: 351-375.
27. Graveley, B. R., A. N. Brooks, J.W. Carlson, M. O. Duff, J. M. Landolin et al., 2011 The developmental transcriptome of Drosophila melanogaster. Nature 471: 473-479.
28. Greenspan, R. J., 2004 Fly Pushing: The Theory and Practice of Drosophila Genetics, Ed. 2. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
29. Griffiths, A. J. F., J. H. Miller, D. T. Suzuki, R. C. Lewontin, and W. M. Gelbart, 2000 An Introduction to Genetic Analysis, Ed. 7. W. H. Freeman, New York.
30. Grigliatti, T. A., D. T. Suzuki, and R. Williamson, 1972 Temperaturesensitive mutations in Drosophila melanogaster. Dev. Biol. 28: 352-371.
31. Grigliatti, T. A., L. Hall, R. Rosenbluth, and D. T. Suzuki, 1973 Temperature-sensitive mutations in Drosophila melanogaster. Mol. Gen. Genet. 120: 107-114.
32. Groth, A. C., M. Fish, R. Nusse, and M. P. Calos, 2004 Construction of transgenic Drosophila by using the site-specific integrase from phage {phi}C31. Genetics 166: 1775-1782.
33. Hammond, M. P., and C. D. Laird, 1985 Control of DNA replication and spatial distribution of defined DNA sequences in salivary gland cells of Drosophila melanogaster. Chromosoma 91: 279-286.
34. Hazelrigg, T., P. Fornili, and T. C. Kaufman, 1982 A cytogenetic analysis of X-ray induced male steriles on the Y chromosome of Drosophila melanogaster. Chromosoma 87: 535-559.
35. He, B., A. Caudy, L. Parsons, A. Rosebrock, A. Pane et al., 2012 Mapping the pericentric heterochromatin by comparative genomic hybridization analysis and chromosome deletions in Drosophila melanogaster. Genome Res. 22: 2507-2519.
36. Holm, D. G., 1976 Compound autosomes, in Ashburner. Novitski 1976: 529-561.
37. Holm, D. G., and A. Chovnick, 1975 Compound autosomes in Drosophila melanogaster: the meiotic behavior of compound thirds. Genetics 81: 293-311.
38. Homyk, T., J. Szidonya, and D. T. Suzuki, 1980 Behavioral mutants of Drosophila melanogaster. Mol. Gen. Genet. 177: 553-565.
39. Hummel, T., and C. Klämbt, 2008 P-element mutagenesis. Methods Mol. Biol. 420: 97-117.
40. Judd, B. H., M. W. Shen, and T. C. Kaufman, 1972 The anatomy and function of a segment of the X chromosome of Drosophila melanogaster. Genetics 71: 139-156.
41. Kennison, J. A., 1981 The genetic and cytological organization of the Y chromosome of Drosophila melanogaster. Genetics 98: 529-548.
42. Koryakov, D. E., I. F. Zhimulev, and P. Dimitri, 2002 Cytogenetic analysis of the third chromosome heterochromatin of Drosophila melanogaster. Genetics 160: 509-517.
43. Krench, M., and J.T. Littleton 2017 Neurotoxicity pathways in Drosophila models of the polyglutamine disorders. Curr. Top. Dev. Biol. 121: 201-223.
44. Lee, W. R., D. T. Beranek, and B. J. Byrne, 1989 Dosage-response relationships for methyl methanesulfonate in Drosophila melanogaster spermatozoa: DNA methylation per nucleotide vs. sex-linked recessive lethal frequency. Mutat. Res. 211: 243-257.
45. Lee, W. R., D. T. Beranek, B. J. Byrne, and A. B. Tucker, 1990 Comparison of dose-response relationships for ethyl methanesulfonate and 1-ethyl-1-nitrosourea in Drosophila melanogaster spermatozoa. Mutat. Res. 231: 31-45.
46. Lefevre, G., 1976 A photographic representation and interpretation of the polytene chromosomes of Drosophila melanogaster salivary glands. Ashburner. Novitski 1976: 31-66.
47. Lewis, E. A., and G. A. Smith, 2016 Using Drosophila models of Huntington’s disease as a translatable tool. J. Neurosci. Methods 265: 89-98.
48. Lewis, E. B., and F. Bacher, 1968 Methods of feeding ethyl methane sulfonate (EMS) to Drosophila males. Drosoph. Inf. Serv. 43: 193.
49. Lim, J. K., and L. A. Snyder, 1974 Cytogenetic and complementation analyses of recessive lethal mutations induced in the X chromosome of Drosophila by three alkylating agents. Genet. Res. 24: 1-10.
50. Lucchesi, J. C., 1994 Sturtevant’s mantle and the (lost?) art of chromosome mechanics. Genetics 136: 707-708.
51. Metz, C. W., 1914 Chromosome studies in the Diptera. J. Exp. Zool. 17: 45-59.
52. modENCODE ConsortiumRoy, S., J. Ernst, P. V. Kharchenko, P. Kheradpour et al., 2010 Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science 330: 1787-1797.
53. Morgan, L. V., 1938 Origin of attached-X chromosomes in Drosophila melanogaster and the occurrence of non-disjunction of X’s in the male. Am. Nat. 72: 434-446.
54. Muller, H. J., 1928 The production of mutations by X-rays. Proc. Natl. Acad. Sci. USA 14: 714-726.
55. Muller, H. J., 1932 Further studies on the nature and causes of gene mutations. Proceedings of the Sixth International Congress of Genetics, Ithaca, NY, Vol. 1, pp. 213-255.
56. Myers, E. W., G. G. Sutton, A. L. Delcher, I. M. Dew, D. P. Fasulo et al., 2000 A whole-genome assembly of Drosophila. Science 287: 2196-2204.
57. Novitski, E., 1954 The compound X chromosomes in Drosophila. Genetics 39: 127-140.
58. Novitski, E., D. Grace, and C. A. Strommen, 1981 The entire compound autosomes of Drosophila melanogaster. Genetics 98: 257-273.
59. Pimpinelli, S., G. Santini, and M. Gatti, 1976 Characterization of Drosophila heterochromatin. Chromosoma 57: 377-386.
60. Rodman, T. C., 1967 DNA replication in salivary gland nuclei of Drosophila melanogaster at successive larval and prepupal stages. Genetics 55: 375-386.
61. Roote, J., and A. Prokop, 2013 How to design a genetic mating scheme: a basic training package for Drosophila genetics. G3 (Bethesda) 3: 353-358.
62. Rossi, F., R. Moschetti, R. Caizzi, N. Corradini, and P. Dimitri, 2007 Cytogenetic and molecular characterization of heterochromatin gene models in Drosophila melanogaster. Genetics 175: 595-607.
63. Ryder, E., and S. Russell, 2003 Transposable elements as tools for genomics and genetics in Drosophila. Brief. Funct. Genomic. Proteomic. 2: 57-71.
64. Saura, A. O., A. J. E. Saura, and V. Sorsa, 1997 Electron micrograph chromosome maps on the internet. Europ. Dros. Res. Conf. 15: 67.
65. Saura, A. O., A. J. Saura, and V. Sorsa, 1999 Polytene chromosome maps on the internet-the first 18 months. Europ. Dros. Res. Conf. 16: 202.
66. St. Johnston, D., 2002 The art and design of genetic screens: Drosophila melanogaster. Nat. Rev. Genet. 3(3): 176-188.
67. Strickberger, M. W., 1976 Genetics, Ed. 2. Macmillan, New York.
68. Sturtevant, A. H., and G. W. Beadle, 1936 The relations of inversions in the X chromosome of Drosophila melanogaster to crossing over and disjunction. Genetics 21: 554-604.
69. Venken, K. J., and H. J. Bellen, 2014 Chemical mutagens, transposons, and transgenes to interrogate gene function in Drosophila melanogaster. Methods 68: 15-28.
70. Venken, K. J., E. Popodi, S. L. Holtzman, K. L. Schulze, S. Park et al., 2010 A molecularly defined duplication set for the X chromosome of Drosophila melanogaster. Genetics 186: 1111-1125.
71. Vibranovski, M. D., L. B. Koerich, and A. B. Carvalho, 2008 Two new Y-linked genes in Drosophila melanogaster. Genetics 179: 2325-2327.
72. Xu, Z., A. Joel Tito, Y. N. Rui, and S. Zhang, 2015 Studying polyglutamine diseases in Drosophila. Exp. Neurol. 274: 25-41.
73. Young, M. W., and B. H. Judd, 1978 Nonessential sequences, genes, and the polytene chromosome bands of Drosophila melanogaster. Genetics 88: 723-742.
74. Zhai, R. G., P. R. Hiesinger, T. W. Koh, P. Verstreken, K. L. Schulze et al., 2003 Mapping Drosophila mutations with molecularly defined P element insertions. Proc. Natl. Acad. Sci. USA 100: 10860-10865.