Description of Auricoccus indicus gen. nov., sp. nov., isolated from skin of human ear

International Journal of Systematic and Evolutionary Microbiology

Volumn 67, Issue 5, 2017, Pages 1212-1218

  Prakash, Om ^a   Muduli, Suchismita ^b   Kumar, Rohit ^b   Kumari, Chanchal ^b   Nimonkar, Yogesh ^a   Shouche, Yogesh S ^a   Sharma, Rakesh ^b,c  

^a NATIONAL CENTRE FOR CELL SCIENCE   (India)

^b CSIR INSTITUTE OF GENOMICS AND INTEGRATIVE BIOLOGY   (India)

^c ACADEMY OF SCIENTIFIC AND INNOVATIVE RESEARCH ACSIR   (India)

Author keywords

Auricoccus; Firmicutes; Human skin; Staphylococcaceae

Indexed keywords

ALANINE; BACTERIAL DNA; BACTERIAL RNA; FATTY ACID; FATTY ACID ESTER; GLYCINE; LYSINE; PEPTIDOGLYCAN; RNA 16S; TRIPEPTIDE;

ARTICLE; AURICOCCUS INDICUS; BACTERIAL STRAIN; BACTERIAL STRUCTURES; BACTERIUM ISOLATE; BOOTSTRAPPING; CHEMOTAXONOMY; CLADISTICS; DNA BASE COMPOSITION; EAR LOBE; EXTERNAL EAR; GENE SEQUENCE; GENETIC SIMILARITY; GENOTYPE; GRAM POSITIVE BACTERIUM; HUMAN; MACROCOCCUS BRUNENSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SKIN SURFACE; STAPHYLOCOCCACEAE; TYPE STRAIN; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; EAR; GENETICS; GRAM POSITIVE ASPOROGENOUS ROD-SHAPED BACTERIA; ISOLATION AND PURIFICATION; MICROBIOLOGY; PHYLOGENY; SKIN;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; EAR; FATTY ACIDS; GRAM-POSITIVE ASPOROGENOUS RODS; HUMANS; PEPTIDOGLYCAN; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SKIN;

EID: 85020414767     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijsem.0.001787     Document Type: Article

References (25)

1. Grice EA, Segre JA. The skin microbiome. Nat Rev Microbiol 2011; 9:244–253.
2. Fredricks DN. Microbial ecology of human skin in health and disease. J Investig Dermatol Symp Proc 2001;6:167–169.
3. Pflughoeft KJ, Versalovic J. Human microbiome in health and disease. Annu Rev Pathol 2012;7:99–122.
4. Naik S, Bouladoux N, Wilhelm C, Molloy MJ, Salcedo R et al. Compartmentalized control of skin immunity by resident commensals. Science 2012;337:1115–1119.
5. Mannerová S, Pantůcek R, Doskar J, Svec P, Snauwaert C et al. Macrococcus brunensis sp. nov., Macrococcus hajekii sp. nov. and Macrococcus lamae sp. nov., from the skin of llamas. Int J Syst Evol Microbiol 2003;53:1647–1654.
6. Prakash O, Verma M, Sharma P, Kumar M, Kumari K et al. Polyphasic approach of bacterial classification–an overview of recent advances. Indian J Microbiol 2007;47:98–108.
7. Prakash O, Nimonkar Y, Shouche YS. Practice and prospects of microbial preservation. FEMS Microbiol Lett 2013;339:1–9.
8. Prakash O, Munot H, Nimonkar Y, Sharma M, Kumbhare S et al. Description of Pelistega indica sp. nov., isolated from human gut. Int J Syst Evol Microbiol 2014;64:1389–1394.
9. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 2012;62:716–721.
10. Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994;22:4673–4680.
11. Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016;33:1870–1874.
12. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985;39:783.
13. Tindall BJ, Rosselló-Móra R, Busse HJ, Ludwig W, Kämpfer P. Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol 2010;60:249–266.
14. Prakash O, Nimonkar Y, Munot H, Sharma A, Vemuluri VR et al. Description of Micrococcus aloeverae sp. nov., an endophytic actinobacterium isolated from Aloe vera. Int J Syst Evol Microbiol 2014;64:3427–3433.
15. Smibert RM, Krieg NR. Phenotypic characterization. In: Methods Gen Mol Bacteriol; 1994. pp. 607–654.
16. Sasser M. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, MIDI Technical Note 101. Newark, DE: MIDI Inc; 2001.
17. Schumann P. 5–Peptidoglycan structure. In: Methods Microbiol; 2011. pp. 101–129.
18. Marmur J. A procedure for isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 1961;3:208–218.
19. Gonzalez JM, Saiz-Jimenez C. A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. Environ Microbiol 2002;4:770–773.
20. Kloos WE, Ballard DN, George CG, Webster JA, Hubner RJ et al. Delimiting the genus Staphylococcus through description of Macrococcus caseolyticus gen. nov., comb. nov. and Macrococcus equipercicus sp. nov., and Macrococcus bovicus sp. nov. and Macrococcus carouselicus sp. nov. Int J Syst Bacteriol 1998;48: 859–877.
21. Amoozegar MA, Bagheri M, Makhdoumi-Kakhki A, Didari M, Schumann P et al. Aliicoccus persicus gen. nov., sp. nov., a halophilic member of the firmicutes isolated from a hypersaline lake. Int J Syst Evol Microbiol 2014;64:1964–1969.
22. Yoon JH, Lee KC, Weiss N, Kang KH, Park YH. Jeotgalicoccus halotolerans gen. nov., sp. nov. and Jeotgalicoccus psychrophilus sp. nov., isolated from the traditional Korean fermented seafood jeotgal. Int J Syst Evol Microbiol 2003;53:595–602.
23. Ventosa A, Marquez MC, Ruiz-Berraquero F, Kocur M. Salinicoccus roseus gen. nov., sp. nov., a new moderately halophilic Grampositive coccus. Syst Appl Microbiol 1990;13:29–33.
24. Alves M, Nogueira C, de Magalhães-Santana A, Chung AP, Morais PV et al. Nosocomiicoccus ampullae gen. nov., sp. nov., isolated from the surface of bottles of saline solution used in wound cleansing. Int J Syst Evol Microbiol 2008;58:2939–2944.
25. Hoyles L, Collins MD, Foster G, Falsen E, Schumann P. Jeotgalicoccus pinnipedialis sp. nov., from a southern elephant seal (Mirounga leonina). Int J Syst Evol Microbiol 2004;54:745–748.