-
1
-
-
84897005978
-
Multistate pointprevalence survey of health care-associated infections
-
Magill SS, Edwards JR, Bamberg W, Beldavs ZG, Dumyati G, Kainer MA, Lynfield R, Maloney M, McAllister-Hollod L, Nadle J, Ray SM, Thompson DL, Wilson LE, Fridkin SK. 2014. Multistate pointprevalence survey of health care-associated infections. N Engl J Med 370:1198-1208. http://dx.doi.org/10.1056/NEJMoa1306801
-
(2014)
N Engl J Med
, vol.370
, pp. 1198-1208
-
-
Magill, S.S.1
Edwards, J.R.2
Bamberg, W.3
Beldavs, Z.G.4
Dumyati, G.5
Kainer, M.A.6
Lynfield, R.7
Maloney, M.8
McAllister-Hollod, L.9
Nadle, J.10
Ray, S.M.11
Thompson, D.L.12
Wilson, L.E.13
Fridkin, S.K.14
-
2
-
-
0031792165
-
Klebsiella spp. as nosocomial pathogens: epidemiology, taxonomy, typing methods, and pathogenicity factors
-
Podschun R, Ullmann U. 1998. Klebsiella spp. as nosocomial pathogens: epidemiology, taxonomy, typing methods, and pathogenicity factors. Clin Microbiol Rev 11:589-603
-
(1998)
Clin Microbiol Rev
, vol.11
, pp. 589-603
-
-
Podschun, R.1
Ullmann, U.2
-
3
-
-
27144490073
-
Extended-spectrum β-lactamases: a clinical update
-
Paterson DL, Bonomo RA. 2005. Extended-spectrum β-lactamases: a clinical update. Clin Microbiol Rev 18:657-686. http://dx.doi.org/ 10.1128/CMR.18.4.657-686.2005
-
(2005)
Clin Microbiol Rev
, vol.18
, pp. 657-686
-
-
Paterson, D.L.1
Bonomo, R.A.2
-
4
-
-
78650883759
-
Emergence of Klebsiella pneumoniae carbapenemase (KPC)-producing bacteria
-
Arnold RS, Thom KA, Sharma S, Phillips M, Kristie Johnson J, Morgan DJ. 2011. Emergence of Klebsiella pneumoniae carbapenemase (KPC)-producing bacteria. South Med J 104:40-45. http://dx.doi.org/ 10.1097/SMJ.0b013e3181fd7d5a
-
(2011)
South Med J
, vol.104
, pp. 40-45
-
-
Arnold, R.S.1
Thom, K.A.2
Sharma, S.3
Phillips, M.4
Kristie Johnson, J.5
Morgan, D.J.6
-
6
-
-
84944144997
-
Epidemiology of carbapenem-resistant Enterobacteriaceae in 7 US communities, 2012-2013
-
Guh AY, Bulens SN, Mu Y, Jacob JT, Reno J, Scott J, Wilson LE, Vaeth E, Lynfield R, Shaw KM, Vagnone PM, Bamberg WM, Janelle SJ, Dumyati G, Concannon C, Beldavs Z, Cunningham M, Cassidy PM, Phipps EC, Kenslow N. 2015. Epidemiology of carbapenem-resistant Enterobacteriaceae in 7 US communities, 2012-2013. JAMA 314: 1479-1487. http://dx.doi.org/10.1001/jama.2015.12480
-
(2015)
JAMA
, vol.314
, pp. 1479-1487
-
-
Guh, A.Y.1
Bulens, S.N.2
Mu, Y.3
Jacob, J.T.4
Reno, J.5
Scott, J.6
Wilson, L.E.7
Vaeth, E.8
Lynfield, R.9
Shaw, K.M.10
Vagnone, P.M.11
Bamberg, W.M.12
Janelle, S.J.13
Dumyati, G.14
Concannon, C.15
Beldavs, Z.16
Cunningham, M.17
Cassidy, P.M.18
Phipps, E.C.19
Kenslow, N.20
more..
-
7
-
-
0015062229
-
Nosocomial Klebsiella infections: intestinal colonization as a reservoir
-
Selden R, Lee S, Wang WL, Bennett JV, Eickhoff TC. 1971. Nosocomial Klebsiella infections: intestinal colonization as a reservoir. Ann Intern Med 74:657-664. http://dx.doi.org/10.7326/0003-4819-74-5-657
-
(1971)
Ann Intern Med
, vol.74
, pp. 657-664
-
-
Selden, R.1
Lee, S.2
Wang, W.L.3
Bennett, J.V.4
Eickhoff, T.C.5
-
8
-
-
0021924027
-
The epidemiology of nosocomial infections caused by Klebsiella pneumoniae
-
Jarvis WR, Munn VP, Highsmith AK, Culver DH, Hughes JM. 1985. The epidemiology of nosocomial infections caused by Klebsiella pneumoniae. Infect Control 6:68-74. http://dx.doi.org/10.1017/S0195941700062639
-
(1985)
Infect Control
, vol.6
, pp. 68-74
-
-
Jarvis, W.R.1
Munn, V.P.2
Highsmith, A.K.3
Culver, D.H.4
Hughes, J.M.5
-
9
-
-
0017692105
-
Hands as route of transmission for Klebsiella species
-
Casewell M, Phillips I. 1977. Hands as route of transmission for Klebsiella species. Br Med J 2:1315-1317. http://dx.doi.org/10.1136/ bmj.2.6098.1315
-
(1977)
Br Med J
, vol.2
, pp. 1315-1317
-
-
Casewell, M.1
Phillips, I.2
-
10
-
-
21444432136
-
Colonization and resistance dynamics of gram-negative bacteria in patients during and after hospitalization
-
Filius PM, Gyssens IC, Kershof IM, Roovers PJ, Ott A, Vulto AG, Verbrugh HA, Endtz HP. 2005. Colonization and resistance dynamics of gram-negative bacteria in patients during and after hospitalization. Antimicrob Agents Chemother 49:2879-2886. http://dx.doi.org/ 10.1128/AAC.49.7.2879-2886.2005
-
(2005)
Antimicrob Agents Chemother
, vol.49
, pp. 2879-2886
-
-
Filius, P.M.1
Gyssens, I.C.2
Kershof, I.M.3
Roovers, P.J.4
Ott, A.5
Vulto, A.G.6
Verbrugh, H.A.7
Endtz, H.P.8
-
11
-
-
0016514259
-
Colonization of intensive care unit patients with gram-negative bacilli
-
Rose HD, Babcock JB. 1975. Colonization of intensive care unit patients with gram-negative bacilli. Am J Epidemiol 101:495-501
-
(1975)
Am J Epidemiol
, vol.101
, pp. 495-501
-
-
Rose, H.D.1
Babcock, J.B.2
-
12
-
-
84862884698
-
Fecal carriage of serotype K1 Klebsiella pneumoniae ST23 strains closely related to liver abscess isolates in Koreans living in Korea
-
Chung DR, Lee H, Park MH, Jung SI, Chang HH, Kim YS, Son JS, Moon C, Kwon KT, Ryu SY, Shin SY, Ko KS, Kang CI, Peck KR, Song JH. 2012. Fecal carriage of serotype K1 Klebsiella pneumoniae ST23 strains closely related to liver abscess isolates in Koreans living in Korea. Eur J Clin Microbiol Infect Dis 31:481-486. http://dx.doi.org/10.1007/ s10096-011-1334-7
-
(2012)
Eur J Clin Microbiol Infect Dis
, vol.31
, pp. 481-486
-
-
Chung, D.R.1
Lee, H.2
Park, M.H.3
Jung, S.I.4
Chang, H.H.5
Kim, Y.S.6
Son, J.S.7
Moon, C.8
Kwon, K.T.9
Ryu, S.Y.10
Shin, S.Y.11
Ko, K.S.12
Kang, C.I.13
Peck, K.R.14
Song, J.H.15
-
13
-
-
0015529902
-
Factors influencing colonisation and antibiotic-resistance patterns of gram-negative bacteria in hospital patients
-
Pollack M, Nieman R, Reinhardt J, Charache P, Jett M, Hardy P. 1972. Factors influencing colonisation and antibiotic-resistance patterns of gram-negative bacteria in hospital patients. Lancet 300:668-671. http:// dx.doi.org/10.1016/S0140-6736(72)92084-3
-
(1972)
Lancet
, vol.300
, pp. 668-671
-
-
Pollack, M.1
Nieman, R.2
Reinhardt, J.3
Charache, P.4
Jett, M.5
Hardy, P.6
-
14
-
-
0033979735
-
Outbreak of a multiresistant Klebsiella pneumoniae strain in an intensive care unit: antibiotic use as risk factor for colonization and infection
-
Asensio A, Oliver A, González-Diego P, Baquero F, Pérez-Díaz JC, Ros P, Cobo J, Palacios M, Lasheras D, Cantón R. 2000. Outbreak of a multiresistant Klebsiella pneumoniae strain in an intensive care unit: antibiotic use as risk factor for colonization and infection. Clin Infect Dis 30:55-60. http://dx.doi.org/10.1086/313590
-
(2000)
Clin Infect Dis
, vol.30
, pp. 55-60
-
-
Asensio, A.1
Oliver, A.2
González-Diego, P.3
Baquero, F.4
Pérez-Díaz, J.C.5
Ros, P.6
Cobo, J.7
Palacios, M.8
Lasheras, D.9
Cantón, R.10
-
15
-
-
84865323065
-
Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing
-
Snitkin ES, Zelazny AM, Thomas PJ, Stock F, NISC Comparative Sequencing Program Group, Henderson DK, Palmore TN, Segre JA. 2012. Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing. Sci Transl Med 4:148ra116. http://dx.doi.org/10.1126/scitranslmed.3004129
-
(2012)
Sci Transl Med
, vol.4
-
-
Snitkin, E.S.1
Zelazny, A.M.2
Thomas, P.J.3
Stock, F.4
Henderson, D.K.5
Palmore, T.N.6
Segre, J.A.7
-
16
-
-
84890787681
-
Dissemination of blaVIM in Greece at the peak of the epidemic of 2005-2006: clonal expansion of Klebsiella pneumoniae clonal complex 147
-
Hasan CM, Turlej-Rogacka A, Vatopoulos AC, Giakkoupi P, Maâtallah M, Giske CG. 2014. Dissemination of blaVIM in Greece at the peak of the epidemic of 2005-2006: clonal expansion of Klebsiella pneumoniae clonal complex 147. Clin Microbiol Infect 20:34-37. http://dx.doi.org/ 10.1111/1469-0691.12187
-
(2014)
Clin Microbiol Infect
, vol.20
, pp. 34-37
-
-
Hasan, C.M.1
Turlej-Rogacka, A.2
Vatopoulos, A.C.3
Giakkoupi, P.4
Maâtallah, M.5
Giske, C.G.6
-
17
-
-
84926452597
-
Impact of therapy and strain type on outcomes in urinary tract infections caused by carbapenem-resistant Klebsiella pneumoniae
-
Van Duin D, Cober E, Richter SS, Perez F, Kalayjian RC, Salata RA, Evans S, Fowler VG, Jr, Kaye KS, Bonomo RA. 2015. Impact of therapy and strain type on outcomes in urinary tract infections caused by carbapenem-resistant Klebsiella pneumoniae. J Antimicrob Chemother 70:1203-1211. http://dx.doi.org/10.1093/jac/dku495
-
(2015)
J Antimicrob Chemother
, vol.70
, pp. 1203-1211
-
-
Van Duin, D.1
Cober, E.2
Richter, S.S.3
Perez, F.4
Kalayjian, R.C.5
Salata, R.A.6
Evans, S.7
Fowler, V.G.8
Kaye, K.S.9
Bonomo, R.A.10
-
18
-
-
84859786361
-
"Silent" dissemination of Klebsiella pneumoniae isolates bearing K. pneumoniae carbapenemase in a long-term care facility for children and young adults in northeast Ohio
-
Viau RA, Hujer AM, Marshall SH, Perez F, Hujer KM, Briceño DF, Dul M, Jacobs MR, Grossberg R, Toltzis P, Bonomo RA. 2012. "Silent" dissemination of Klebsiella pneumoniae isolates bearing K. pneumoniae carbapenemase in a long-term care facility for children and young adults in northeast Ohio. Clin Infect Dis 54:1314-1321. http://dx.doi.org/ 10.1093/cid/cis036
-
(2012)
Clin Infect Dis
, vol.54
, pp. 1314-1321
-
-
Viau, R.A.1
Hujer, A.M.2
Marshall, S.H.3
Perez, F.4
Hujer, K.M.5
Briceño, D.F.6
Dul, M.7
Jacobs, M.R.8
Grossberg, R.9
Toltzis, P.10
Bonomo, R.A.11
-
19
-
-
23744446161
-
Multilocus sequence typing of Klebsiella pneumoniae nosocomial isolates
-
Diancourt L, Passet V, Verhoef J, Grimont PA, Brisse S. 2005. Multilocus sequence typing of Klebsiella pneumoniae nosocomial isolates. J Clin Microbiol 43:4178-4182. http://dx.doi.org/10.1128/JCM.43.8.4178-4182.2005
-
(2005)
J Clin Microbiol
, vol.43
, pp. 4178-4182
-
-
Diancourt, L.1
Passet, V.2
Verhoef, J.3
Grimont, P.A.4
Brisse, S.5
-
20
-
-
84889784380
-
wzi gene sequencing, a rapid method for determination of capsular type for Klebsiella strains
-
Brisse S, Passet V, Haugaard AB, Babosan A, Kassis-Chikhani N, Struve C, Decré D. 2013. wzi gene sequencing, a rapid method for determination of capsular type for Klebsiella strains. J Clin Microbiol 51:4073-4078. http://dx.doi.org/10.1128/JCM.01924-13
-
(2013)
J Clin Microbiol
, vol.51
, pp. 4073-4078
-
-
Brisse, S.1
Passet, V.2
Haugaard, A.B.3
Babosan, A.4
Kassis-Chikhani, N.5
Struve, C.6
Decré, D.7
-
21
-
-
84901282068
-
Carbapenem-resistant Klebsiella pneumoniae exhibit variability in capsular polysaccharide and capsule associated virulence traits
-
Diago-Navarro E, Chen L, Passet V, Burack S, Ulacia-Hernando A, Kodiyanplakkal RP, Levi MH, Brisse S, Kreiswirth BN, Fries BC. 2014. Carbapenem-resistant Klebsiella pneumoniae exhibit variability in capsular polysaccharide and capsule associated virulence traits. J Infect Dis 210:803-813. http://dx.doi.org/10.1093/infdis/jiu157
-
(2014)
J Infect Dis
, vol.210
, pp. 803-813
-
-
Diago-Navarro, E.1
Chen, L.2
Passet, V.3
Burack, S.4
Ulacia-Hernando, A.5
Kodiyanplakkal, R.P.6
Levi, M.H.7
Brisse, S.8
Kreiswirth, B.N.9
Fries, B.C.10
-
22
-
-
84960474943
-
Hypervirulent Klebsiella pneumoniae clones causing bacteraemia in adults in a teaching hospital in Barcelona, Spain (2007-2013)
-
Cubero M, Grau I, Tubau F, Pallarés R, Dominguez MA, Liñares J, Ardanuy C. 2016. Hypervirulent Klebsiella pneumoniae clones causing bacteraemia in adults in a teaching hospital in Barcelona, Spain (2007-2013). Clin Microbiol Infect 22:154-160. http://dx.doi.org/10.1016/ j.cmi.2015.09.025
-
(2016)
Clin Microbiol Infect
, vol.22
, pp. 154-160
-
-
Cubero, M.1
Grau, I.2
Tubau, F.3
Pallarés, R.4
Dominguez, M.A.5
Liñares, J.6
Ardanuy, C.7
-
23
-
-
84905400726
-
Population structure of KPC-producing Klebsiella pneumoniae isolates from midwestern U.S. hospitals
-
Wright MS, Perez F, Brinkac L, Jacobs MR, Kaye K, Cober E, van Duin D, Marshall SH, Hujer AM, Rudin SD, Hujer KM, Bonomo RA, Adams MD. 2014. Population structure of KPC-producing Klebsiella pneumoniae isolates from midwestern U.S. hospitals. Antimicrob Agents Chemother 58:4961-4965. http://dx.doi.org/10.1128/AAC.00125-14
-
(2014)
Antimicrob Agents Chemother
, vol.58
, pp. 4961-4965
-
-
Wright, M.S.1
Perez, F.2
Brinkac, L.3
Jacobs, M.R.4
Kaye, K.5
Cober, E.6
van Duin, D.7
Marshall, S.H.8
Hujer, A.M.9
Rudin, S.D.10
Hujer, K.M.11
Bonomo, R.A.12
Adams, M.D.13
-
24
-
-
84908087779
-
Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups
-
Bialek-Davenet S, Criscuolo A, Ailloud F, Passet V, Jones L, Delannoy-Vieillard AS, Garin B, Le Hello S, Arlet G, Nicolas-Chanoine MH, Decré D, Brisse S. 2014. Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups. Emerg Infect Dis 20:1812-1820. http://dx.doi.org/10.3201/eid2011.140206
-
(2014)
Emerg Infect Dis
, vol.20
, pp. 1812-1820
-
-
Bialek-Davenet, S.1
Criscuolo, A.2
Ailloud, F.3
Passet, V.4
Jones, L.5
Delannoy-Vieillard, A.S.6
Garin, B.7
Le Hello, S.8
Arlet, G.9
Nicolas-Chanoine, M.H.10
Decré, D.11
Brisse, S.12
-
26
-
-
84937517798
-
KPC-producing Klebsiella pneumoniae rectal colonization is a risk factor for mortality in patients with diabetic foot infections
-
Tascini C, Lipsky BA, Iacopi E, Ripoli A, Sbrana F, Coppelli A, Goretti C, Piaggesi A, Menichetti F. 2015. KPC-producing Klebsiella pneumoniae rectal colonization is a risk factor for mortality in patients with diabetic foot infections. Clin Microbiol Infect 21:790.e1-790.e3. http:// dx.doi.org/10.1016/j.cmi.2015.04.010
-
(2015)
Clin Microbiol Infect
, vol.21
-
-
Tascini, C.1
Lipsky, B.A.2
Iacopi, E.3
Ripoli, A.4
Sbrana, F.5
Coppelli, A.6
Goretti, C.7
Piaggesi, A.8
Menichetti, F.9
-
27
-
-
84937548487
-
The association between colonization with carbapenemase-producing Enterobacteriaceae and overall ICU mortality: an observational cohort study
-
Dautzenberg MJ, Wekesa AN, Gniadkowski M, Antoniadou A, Giamarellou H, Petrikkos GL, Skiada A, Brun-Buisson C, Bonten MJ, Derde LP, Mastering hOSpital Antimicrobial Resistance in Europe Work Package 3 Study Team. 2015. The association between colonization with carbapenemase-producing Enterobacteriaceae and overall ICU mortality: an observational cohort study. Crit Care Med 43: 1170-1177. http://dx.doi.org/10.1097/CCM.0000000000001028
-
(2015)
Crit Care Med
, vol.43
, pp. 1170-1177
-
-
Dautzenberg, M.J.1
Wekesa, A.N.2
Gniadkowski, M.3
Antoniadou, A.4
Giamarellou, H.5
Petrikkos, G.L.6
Skiada, A.7
Brun-Buisson, C.8
Bonten, M.J.9
Derde, L.P.10
-
28
-
-
67749143997
-
Molecular epidemiology of KPC-producing Klebsiella pneumoniae isolates in the United States: clonal expansion of multilocus sequence type 258
-
Kitchel B, Rasheed JK, Patel JB, Srinivasan A, Navon-Venezia S, Carmeli Y, Brolund A, Giske CG. 2009. Molecular epidemiology of KPC-producing Klebsiella pneumoniae isolates in the United States: clonal expansion of multilocus sequence type 258. Antimicrob Agents Chemother 53:3365-3370. http://dx.doi.org/10.1128/AAC.00126-09
-
(2009)
Antimicrob Agents Chemother
, vol.53
, pp. 3365-3370
-
-
Kitchel, B.1
Rasheed, J.K.2
Patel, J.B.3
Srinivasan, A.4
Navon-Venezia, S.5
Carmeli, Y.6
Brolund, A.7
Giske, C.G.8
-
29
-
-
60649091495
-
Characterization of blaKPC-containing Klebsiella pneumoniae isolates detected in different institutions in the eastern USA
-
Endimiani A, Hujer AM, Perez F, Bethel CR, Hujer KM, Kroeger J, Oethinger M, Paterson DL, Adams MD, Jacobs MR, Diekema DJ, Hall GS, Jenkins SG, Rice LB, Tenover FC, Bonomo RA. 2009. Characterization of blaKPC-containing Klebsiella pneumoniae isolates detected in different institutions in the eastern USA. J Antimicrob Chemother 63: 427-437. http://dx.doi.org/10.1093/jac/dkn547
-
(2009)
J Antimicrob Chemother
, vol.63
, pp. 427-437
-
-
Endimiani, A.1
Hujer, A.M.2
Perez, F.3
Bethel, C.R.4
Hujer, K.M.5
Kroeger, J.6
Oethinger, M.7
Paterson, D.L.8
Adams, M.D.9
Jacobs, M.R.10
Diekema, D.J.11
Hall, G.S.12
Jenkins, S.G.13
Rice, L.B.14
Tenover, F.C.15
Bonomo, R.A.16
-
30
-
-
61449176136
-
Quantitative metabolomics reveals an epigenetic blueprint for iron acquisition in uropathogenic Escherichia coli
-
Henderson JP, Crowley JR, Pinkner JS, Walker JN, Tsukayama P, Stamm WE, Hooton TM, Hultgren SJ. 2009. Quantitative metabolomics reveals an epigenetic blueprint for iron acquisition in uropathogenic Escherichia coli. PLoS Pathog 5:e1000305. http://dx.doi.org/10.1371/ journal.ppat.1000305
-
(2009)
PLoS Pathog
, vol.5
-
-
Henderson, J.P.1
Crowley, J.R.2
Pinkner, J.S.3
Walker, J.N.4
Tsukayama, P.5
Stamm, W.E.6
Hooton, T.M.7
Hultgren, S.J.8
-
31
-
-
84926666022
-
Prevention of colonization and infection by Klebsiella pneumoniae carbapenemase-producing Enterobacteriaceae in long-term acute-care hospitals
-
Hayden MK, Lin MY, Lolans K, Weiner S, Blom D, Moore NM, Fogg L, Henry D, Lyles R, Thurlow C, Sikka M, Hines D, Weinstein RA, Centers for Disease Control and Prevention Epicenters Program. 2015. Prevention of colonization and infection by Klebsiella pneumoniae carbapenemase-producing Enterobacteriaceae in long-term acute-care hospitals. Clin Infect Dis 60:1153-1161. http://dx.doi.org/10.1093/cid/ ciu1173
-
(2015)
Clin Infect Dis
, vol.60
, pp. 1153-1161
-
-
Hayden, M.K.1
Lin, M.Y.2
Lolans, K.3
Weiner, S.4
Blom, D.5
Moore, N.M.6
Fogg, L.7
Henry, D.8
Lyles, R.9
Thurlow, C.10
Sikka, M.11
Hines, D.12
Weinstein, R.A.13
-
32
-
-
0017836678
-
The homogeneity of the faecal coliform flora of normal school-girls, characterized by serological and biochemical properties
-
Lidin-Janson G, Kaijser B, Lincoln K, Olling S, Wedel H. 1978. The homogeneity of the faecal coliform flora of normal school-girls, characterized by serological and biochemical properties. Med Microbiol Immunol 164:247-253. http://dx.doi.org/10.1007/BF02125493
-
(1978)
Med Microbiol Immunol
, vol.164
, pp. 247-253
-
-
Lidin-Janson, G.1
Kaijser, B.2
Lincoln, K.3
Olling, S.4
Wedel, H.5
-
33
-
-
13644269309
-
Guidelines for the management of adults with hospitalacquired, ventilator-associated, and healthcare-associated pneumonia
-
ATS. 2005. Guidelines for the management of adults with hospitalacquired, ventilator-associated, and healthcare-associated pneumonia. Am J Respir Crit Care Med 171:388-416. http://dx.doi.org/10.1164/ rccm.200405-644ST
-
(2005)
Am J Respir Crit Care Med
, vol.171
, pp. 388-416
-
-
-
35
-
-
0031613172
-
Comorbidity measures for use with administrative data
-
Elixhauser A, Steiner C, Harris DR, Coffey RM. 1998. Comorbidity measures for use with administrative data. Med Care 36:8-27. http:// dx.doi.org/10.1097/00005650-199801000-00004
-
(1998)
Med Care
, vol.36
, pp. 8-27
-
-
Elixhauser, A.1
Steiner, C.2
Harris, D.R.3
Coffey, R.M.4
-
36
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. 2007. Clustal W and Clustal X version 2.0. BioInformatics 23:2947-2948. http://dx.doi.org/10.1093/bioinformatics/ btm404
-
(2007)
BioInformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
37
-
-
84890330527
-
MEGA6: molecular evolutionary genetics analysis version 6.0
-
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30: 2725-2729 http://dx.doi.org/10.1093/molbev/mst197
-
(2013)
Mol Biol Evol
, vol.30
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
-
38
-
-
84905049901
-
Trimmomatic: a flexible trimmer for Illumina sequence data
-
Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114-2120 http:// dx.doi.org/10.1093/bioinformatics/btu170
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
39
-
-
84871457328
-
FastUniq: a fast de novo duplicates removal tool for paired short reads
-
Xu H, Luo X, Qian J, Pang X, Song J, Qian G, Chen J, Chen S. 2012. FastUniq: a fast de novo duplicates removal tool for paired short reads. PLoS One 7:e52249. http://dx.doi.org/10.1371/journal.pone.0052249
-
(2012)
PLoS One
, vol.7
-
-
Xu, H.1
Luo, X.2
Qian, J.3
Pang, X.4
Song, J.5
Qian, G.6
Chen, J.7
Chen, S.8
-
40
-
-
84942887758
-
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
-
Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, He G, Chen Y, Pan Q, Liu Y, Tang J, Wu G, Zhang H, Shi Y, Liu Y, Yu C, Wang B, Lu Y, Han C, Cheung DW, Yiu SM, Peng S, Xiaoqian Z, Liu G, Liao X, Li Y, Yang H, Wang J, Lam TW, Wang J. 2012. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 1:18. http://dx.doi.org/10.1186/2047-217X-1-18
-
(2012)
GigaScience
, vol.1
, pp. 18
-
-
Luo, R.1
Liu, B.2
Xie, Y.3
Li, Z.4
Huang, W.5
Yuan, J.6
He, G.7
Chen, Y.8
Pan, Q.9
Liu, Y.10
Tang, J.11
Wu, G.12
Zhang, H.13
Shi, Y.14
Liu, Y.15
Yu, C.16
Wang, B.17
Lu, Y.18
Han, C.19
Cheung, D.W.20
Yiu, S.M.21
Peng, S.22
Xiaoqian, Z.23
Liu, G.24
Liao, X.25
Li, Y.26
Yang, H.27
Wang, J.28
Lam, T.W.29
Wang, J.30
more..
-
41
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18:821-829. http:// dx.doi.org/10.1101/gr.074492.107
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
42
-
-
78650827616
-
BIGSdb: scalable analysis of bacterial genome variation at the population level
-
Jolley KA, Maiden MC. 2010. BIGSdb: scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 11:595. http://dx.doi.org/10.1186/1471-2105-11-595
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 595
-
-
Jolley, K.A.1
Maiden, M.C.2
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