-
1
-
-
33845476677
-
Circulating nucleic acids (CNAs) and cancer-a survey
-
1:CAS:528:DC%2BD28Xhtlaltr7E 17137717
-
Fleischhacker, M. & Schmidt, B. Circulating nucleic acids (CNAs) and cancer-a survey. Biochim Biophys Acta 1775, 181-232 (2007).
-
(2007)
Biochim Biophys Acta
, vol.1775
, pp. 181-232
-
-
Fleischhacker, M.1
Schmidt, B.2
-
2
-
-
84877579861
-
Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA
-
2013Natur.497.108M 1:CAS:528:DC%2BC3sXltlOls7k%3D 23563269
-
Murtaza, M. et al. Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA. Nature 497, 108-112 (2013).
-
(2013)
Nature
, vol.497
, pp. 108-112
-
-
Murtaza, M.1
-
3
-
-
84896371874
-
Detection of circulating tumor DNA in early- and late-stage human malignancies
-
Bettegowda, C. et al. Detection of circulating tumor DNA in early- and late-stage human malignancies. Sci Transl Med 6, 224ra224 (2014).
-
(2014)
Sci Transl Med
, vol.6
, pp. 224ra224
-
-
Bettegowda, C.1
-
4
-
-
33749453792
-
Mutational spectrum in the recent human genome inferred by single nucleotide polymorphisms
-
1:CAS:528:DC%2BD28XhtVOgtbvM 16860534
-
Jiang, C. & Zhao, Z. Mutational spectrum in the recent human genome inferred by single nucleotide polymorphisms. Genomics 88, 527-534 (2006).
-
(2006)
Genomics
, vol.88
, pp. 527-534
-
-
Jiang, C.1
Zhao, Z.2
-
5
-
-
84940977149
-
Discriminating somatic and germline mutations in tumor DNA samples without matching normals
-
1:CAS:528:DC%2BC2MXhsFChtL%2FP 26209359 4561496
-
Hiltemann, S., Jenster, G., Trapman, J., van der Spek, P. & Stubbs, A. Discriminating somatic and germline mutations in tumor DNA samples without matching normals. Genome Res 25, 1382-1390 (2015).
-
(2015)
Genome Res
, vol.25
, pp. 1382-1390
-
-
Hiltemann, S.1
Jenster, G.2
Trapman, J.3
Van Der Spek, P.4
Stubbs, A.5
-
6
-
-
84946040120
-
COSMIC: Exploring the world's knowledge of somatic mutations in human cancer
-
25355519
-
Forbes, S. A. et al. COSMIC: exploring the world's knowledge of somatic mutations in human cancer. Nucleic Acids Res 43, D805-811 (2015).
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D805-811
-
-
Forbes, S.A.1
-
7
-
-
84976904305
-
ClinVar: Public archive of interpretations of clinically relevant variants
-
26582918
-
Landrum, M. J. et al. ClinVar: public archive of interpretations of clinically relevant variants. Nucleic Acids Res 44, D862-868 (2016).
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D862-868
-
-
Landrum, M.J.1
-
8
-
-
0035173378
-
DbSNP: The NCBI database of genetic variation
-
1:CAS:528:DC%2BD3MXjtlWmtb0%3D 11125122 29783
-
Sherry, S. T. et al. dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 29, 308-311 (2001).
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 308-311
-
-
Sherry, S.T.1
-
10
-
-
84975795680
-
An integrated map of genetic variation from 1,092 human genomes
-
2012Natur.491.56T
-
Genomes Project, C. et al. An integrated map of genetic variation from 1,092 human genomes. Nature 491, 56-65 (2012).
-
(2012)
Nature
, vol.491
, pp. 56-65
-
-
Genomes Project, C.1
-
11
-
-
84905579746
-
C. Whole-genome sequence variation, population structure and demographic history of the Dutch population
-
Genome of the Netherlands
-
Genome of the Netherlands, C. Whole-genome sequence variation, population structure and demographic history of the Dutch population. Nat Genet 46, 818-825 (2014).
-
(2014)
Nat Genet
, vol.46
, pp. 818-825
-
-
-
12
-
-
84976871272
-
Reference sequence (RefSeq) database at NCBI: Current status, taxonomic expansion, and functional annotation
-
26553804
-
O'Leary, N. A. et al. Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation. Nucleic Acids Res 44, D733-745 (2016).
-
(2016)
Nucleic Acids Res
, vol.44
, pp. D733-745
-
-
O'Leary, N.A.1
-
13
-
-
84861576201
-
The landscape of cancer genes and mutational processes in breast cancer
-
1:CAS:528:DC%2BC38XovFyrsrs%3D 22722201 3428862
-
Stephens, P. J. et al. The landscape of cancer genes and mutational processes in breast cancer. Nature 486, 400-404 (2012).
-
(2012)
Nature
, vol.486
, pp. 400-404
-
-
Stephens, P.J.1
-
14
-
-
84867290918
-
Dramatic reduction of sequence artefacts from DNA isolated from formalin-fixed cancer biopsies by treatment with uracil- DNA glycosylase
-
22643842 3388184
-
Do, H. & Dobrovic, A. Dramatic reduction of sequence artefacts from DNA isolated from formalin-fixed cancer biopsies by treatment with uracil- DNA glycosylase. Oncotarget 3, 546-558 (2012).
-
(2012)
Oncotarget
, vol.3
, pp. 546-558
-
-
Do, H.1
Dobrovic, A.2
-
15
-
-
84883316129
-
Reducing sequence artifacts in amplicon-based massively parallel sequencing of formalin-fixed paraffin-embedded DNA by enzymatic depletion of uracil-containing templates
-
1:CAS:528:DC%2BC3sXhsVaiu73P 23649127
-
Do, H., Wong, S. Q., Li, J. & Dobrovic, A. Reducing sequence artifacts in amplicon-based massively parallel sequencing of formalin-fixed paraffin-embedded DNA by enzymatic depletion of uracil-containing templates. Clin Chem 59, 1376-1383 (2013).
-
(2013)
Clin Chem
, vol.59
, pp. 1376-1383
-
-
Do, H.1
Wong, S.Q.2
Li, J.3
Dobrovic, A.4
-
16
-
-
80053173227
-
Targeted high throughput sequencing in clinical cancer settings: Formaldehyde fixed-paraffin embedded (FFPE) tumor tissues, input amount and tumor heterogeneity
-
1:CAS:528:DC%2BC3MXhtlGms7jE 21958464 3192667
-
Kerick, M. et al. Targeted high throughput sequencing in clinical cancer settings: formaldehyde fixed-paraffin embedded (FFPE) tumor tissues, input amount and tumor heterogeneity. BMC Med Genomics 4, 68 (2011).
-
(2011)
BMC Med Genomics
, vol.4
, pp. 68
-
-
Kerick, M.1
-
17
-
-
84901604272
-
Sequence artefacts in a prospective series of formalin-fixed tumours tested for mutations in hotspot regions by massively parallel sequencing
-
24885028 4032349
-
Wong, S. Q. et al. Sequence artefacts in a prospective series of formalin-fixed tumours tested for mutations in hotspot regions by massively parallel sequencing. BMC Med Genomics 7, 23 (2014).
-
(2014)
BMC Med Genomics
, vol.7
, pp. 23
-
-
Wong, S.Q.1
-
18
-
-
84898938357
-
High-throughput detection of clinically relevant mutations in archived tumor samples by multiplexed PCR and next-generation sequencing
-
2014stsl.book.B 1:CAS:528:DC%2BC2cXmtl2msLo%3D 24573554
-
Bourgon, R. et al. High-throughput detection of clinically relevant mutations in archived tumor samples by multiplexed PCR and next-generation sequencing. Clin Cancer Res 20, 2080-2091 (2014).
-
(2014)
Clin Cancer Res
, vol.20
, pp. 2080-2091
-
-
Bourgon, R.1
-
19
-
-
84861541343
-
Mutational processes molding the genomes of 21 breast cancers
-
1:CAS:528:DC%2BC38Xntlyltrg%3D 22608084 3414841
-
Nik-Zainal, S. et al. Mutational processes molding the genomes of 21 breast cancers. Cell 149, 979-993 (2012).
-
(2012)
Cell
, vol.149
, pp. 979-993
-
-
Nik-Zainal, S.1
-
20
-
-
0024326771
-
Reference standards for flow cytometry and application in comparative studies of nuclear DNA content
-
1:STN:280:DyaK3c%2FlvFGrsw%3D%3D 2582960
-
Tiersch, T. R., Chandler, R. W., Wachtel, S. S. & Elias, S. Reference standards for flow cytometry and application in comparative studies of nuclear DNA content. Cytometry 10, 706-710 (1989).
-
(1989)
Cytometry
, vol.10
, pp. 706-710
-
-
Tiersch, T.R.1
Chandler, R.W.2
Wachtel, S.S.3
Elias, S.4
-
21
-
-
0344629203
-
Bias and artifacts in multitemplate polymerase chain reactions (PCR)
-
1:CAS:528:DC%2BD2cXhsFersg%3D%3D 16233530
-
Kanagawa, T. Bias and artifacts in multitemplate polymerase chain reactions (PCR). J Biosci Bioeng 96, 317-323 (2003).
-
(2003)
J Biosci Bioeng
, vol.96
, pp. 317-323
-
-
Kanagawa, T.1
-
22
-
-
84962258871
-
Use of cell free DNA in breast oncology
-
1:CAS:528:DC%2BC28XkvV2ruro%3D 27012505
-
Canzoniero, J. V. & Park, B. H. Use of cell free DNA in breast oncology. Biochim Biophys Acta 1865, 266-274 (2016).
-
(2016)
Biochim Biophys Acta
, vol.1865
, pp. 266-274
-
-
Canzoniero, J.V.1
Park, B.H.2
-
23
-
-
16244367487
-
Effects of preanalytical factors on the molecular size of cell-free DNA in blood
-
1:CAS:528:DC%2BD2MXivFCqtb4%3D 15708950
-
Chan, K. C., Yeung, S. W., Lui, W. B., Rainer, T. H. & Lo, Y. M. Effects of preanalytical factors on the molecular size of cell-free DNA in blood. Clin Chem 51, 781-784 (2005).
-
(2005)
Clin Chem
, vol.51
, pp. 781-784
-
-
Chan, K.C.1
Yeung, S.W.2
Lui, W.B.3
Rainer, T.H.4
Lo, Y.M.5
-
24
-
-
84994715747
-
Cell-free DNA in maternal plasma and serum: A comparison of quantity, quality and tissue origin using genomic and epigenomic approaches
-
1:CAS:528:DC%2BC28XhsFSks73L 27620950
-
Wong, F. C. et al. Cell-free DNA in maternal plasma and serum: A comparison of quantity, quality and tissue origin using genomic and epigenomic approaches. Clin Biochem 49, 1379-1386 (2016).
-
(2016)
Clin Biochem
, vol.49
, pp. 1379-1386
-
-
Wong, F.C.1
-
25
-
-
85016240019
-
The effect of preservative and temperature on the analysis of circulating tumor DNA
-
Parpart-Li, S. et al. The effect of preservative and temperature on the analysis of circulating tumor DNA. Clin Cancer Res (2016).
-
(2016)
Clin Cancer Res
-
-
Parpart-Li, S.1
-
26
-
-
84994707439
-
Performance of Streck cfDNA Blood Collection Tubes for Liquid Biopsy Testing
-
27832189 5104415
-
Medina Diaz, I. et al. Performance of Streck cfDNA Blood Collection Tubes for Liquid Biopsy Testing. PLoS One 11, e0166354 (2016).
-
(2016)
PLoS One
, vol.11
, pp. e0166354
-
-
Medina Diaz, I.1
-
27
-
-
85027881796
-
Application of circulating tumor DNA in prospective clinical oncology trials: Standardization of pre-analytical conditions
-
van Dessel, L. F. et al. Application of circulating tumor DNA in prospective clinical oncology trials: standardization of pre-analytical conditions. Mol Oncol (2017).
-
(2017)
Mol Oncol
-
-
Van Dessel, L.F.1
-
28
-
-
84875520648
-
Analysis of circulating tumor DNA to monitor metastatic breast cancer
-
1:CAS:528:DC%2BC3sXlt1SqsrY%3D 23484797
-
Dawson, S. J. et al. Analysis of circulating tumor DNA to monitor metastatic breast cancer. N Engl J Med 368, 1199-1209 (2013).
-
(2013)
N Engl J Med
, vol.368
, pp. 1199-1209
-
-
Dawson, S.J.1
-
29
-
-
85011003350
-
Individualized Molecular Analyses Guide Efforts (IMAGE): A Prospective Study of Molecular Profiling of Tissue and Blood in Metastatic Triple-Negative Breast Cancer
-
1:CAS:528:DC%2BC2sXhtVeitbk%3D 27489289
-
Parsons, H. A. et al. Individualized Molecular Analyses Guide Efforts (IMAGE): A Prospective Study of Molecular Profiling of Tissue and Blood in Metastatic Triple-Negative Breast Cancer. Clin Cancer Res 23, 379-386 (2017).
-
(2017)
Clin Cancer Res
, vol.23
, pp. 379-386
-
-
Parsons, H.A.1
-
30
-
-
85010281740
-
Mutation Analysis of Cell-Free DNA and Single Circulating Tumor Cells in Metastatic Breast Cancer Patients with High Circulating Tumor Cell Counts
-
1:CAS:528:DC%2BC2sXhs1Witg%3D%3D 27334837
-
Shaw, J. A. et al. Mutation Analysis of Cell-Free DNA and Single Circulating Tumor Cells in Metastatic Breast Cancer Patients with High Circulating Tumor Cell Counts. Clin Cancer Res 23, 88-96 (2017).
-
(2017)
Clin Cancer Res
, vol.23
, pp. 88-96
-
-
Shaw, J.A.1
-
31
-
-
85011628861
-
Next Generation Sequencing of Circulating Cell-Free DNA for Evaluating Mutations and Gene Amplification in Metastatic Breast Cancer
-
27940449
-
Page, K. et al. Next Generation Sequencing of Circulating Cell-Free DNA for Evaluating Mutations and Gene Amplification in Metastatic Breast Cancer. Clin Chem 63, 532-541 (2017).
-
(2017)
Clin Chem
, vol.63
, pp. 532-541
-
-
Page, K.1
-
32
-
-
84921758615
-
Plasma circulating tumor DNA as an alternative to metastatic biopsies for mutational analysis in breast cancer
-
1:STN:280:DC%2BC2M%2FnsF2juw%3D%3D 25185240
-
Rothe, F. et al. Plasma circulating tumor DNA as an alternative to metastatic biopsies for mutational analysis in breast cancer. Ann Oncol 25, 1959-1965 (2014).
-
(2014)
Ann Oncol
, vol.25
, pp. 1959-1965
-
-
Rothe, F.1
-
33
-
-
77951970005
-
A review on the molecular diagnostics of Lynch syndrome: A central role for the pathology laboratory
-
19929944
-
van Lier, M. G. et al. A review on the molecular diagnostics of Lynch syndrome: a central role for the pathology laboratory. J Cell Mol Med 14, 181-197 (2010).
-
(2010)
J Cell Mol Med
, vol.14
, pp. 181-197
-
-
Van Lier, M.G.1
-
34
-
-
0026505212
-
C-myc amplification is a better prognostic factor than HER2/neu amplification in primary breast cancer
-
1:STN:280:DyaK387ksFKmtQ%3D%3D 1737370
-
Berns, E. M. et al. c-myc amplification is a better prognostic factor than HER2/neu amplification in primary breast cancer. Cancer Res 52, 1107-1113 (1992).
-
(1992)
Cancer Res
, vol.52
, pp. 1107-1113
-
-
Berns, E.M.1
-
35
-
-
84978755588
-
Cell-free DNA mutations as biomarkers in breast cancer patients receiving tamoxifen
-
27270325 5190033
-
Jansen, M. P. et al. Cell-free DNA mutations as biomarkers in breast cancer patients receiving tamoxifen. Oncotarget 7, 43412-43418 (2016).
-
(2016)
Oncotarget
, vol.7
, pp. 43412-43418
-
-
Jansen, M.P.1
-
37
-
-
77956534324
-
ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
-
20601685 2938201
-
Wang, K., Li, M. & Hakonarson, H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 38, e164 (2010).
-
(2010)
Nucleic Acids Res
, vol.38
, pp. e164
-
-
Wang, K.1
Li, M.2
Hakonarson, H.3
|