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Volumn 170, Issue , 2018, Pages 121-131

A population MRI brain template and analysis tools for the macaque

Author keywords

Atlas; Macaque; MRI; Segmentation; Template; Vasculature

Indexed keywords

ADULT; ANIMAL EXPERIMENT; BRAIN; BRAIN REGION; BRAIN SIZE; CONTROLLED STUDY; CORTICAL THICKNESS (BRAIN); FEMALE; IMAGE ANALYSIS; IMAGE QUALITY; IMAGE RECONSTRUCTION; IMAGE SEGMENTATION; MACACA; MALE; MORPHOMETRY; NEUROIMAGING; NONHUMAN; NUCLEAR MAGNETIC RESONANCE IMAGING; PRIORITY JOURNAL; REVIEW; STANDARDIZATION; ANATOMY AND HISTOLOGY; ANIMAL; DIAGNOSTIC IMAGING; IMAGE PROCESSING; PROCEDURES; VASCULARIZATION;

EID: 85019381123     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2017.04.063     Document Type: Review
Times cited : (136)

References (51)
  • 1
    • 34547824838 scopus 로고    scopus 로고
    • J.., July). The shape operator for differential analysis of images. In: Proceedings of the Biennial International Conference on Information Processing in Medical Imaging. Springer Berlin Heidelberg.
    • Avants, B., & Gee, J., 2003., July). The shape operator for differential analysis of images. In: Proceedings of the Biennial International Conference on Information Processing in Medical Imaging pp. 101–113. Springer Berlin Heidelberg.
    • (2003) , pp. 101-113
    • Gee, A.B.1
  • 2
    • 84855903911 scopus 로고    scopus 로고
    • An open source multivariate framework for n-tissue segmentation with evaluation on public data
    • Avants, B.B., Tustison, N.J., Wu, J., Cook, P.A., Gee, J.C., An open source multivariate framework for n-tissue segmentation with evaluation on public data. Neuroinformatics 9:4 (2011), 381–400.
    • (2011) Neuroinformatics , vol.9 , Issue.4 , pp. 381-400
    • Avants, B.B.1    Tustison, N.J.2    Wu, J.3    Cook, P.A.4    Gee, J.C.5
  • 4
    • 61349115538 scopus 로고    scopus 로고
    • Object representations in the temporal cortex of monkeys and humans as revealed by functional magnetic resonance imaging
    • Bell, A.H., Hadj-Bouziane, F., Frihauf, J.B., Tootell, R.B., Ungerleider, L.G., Object representations in the temporal cortex of monkeys and humans as revealed by functional magnetic resonance imaging. J. Neurophysiol. 101:2 (2009), 688–700.
    • (2009) J. Neurophysiol. , vol.101 , Issue.2 , pp. 688-700
    • Bell, A.H.1    Hadj-Bouziane, F.2    Frihauf, J.B.3    Tootell, R.B.4    Ungerleider, L.G.5
  • 5
    • 2442686687 scopus 로고    scopus 로고
    • Atlas template images for nonhuman primate neuroimaging: baboon and macaque
    • Black, K.J., Koller, J.M., Snyder, A.Z., Perlmutter, J.S., Atlas template images for nonhuman primate neuroimaging: baboon and macaque. Methods Enzym. 385 (2004), 91–102.
    • (2004) Methods Enzym. , vol.385 , pp. 91-102
    • Black, K.J.1    Koller, J.M.2    Snyder, A.Z.3    Perlmutter, J.S.4
  • 7
    • 0027933269 scopus 로고
    • Architectonic subdivision of the orbital and medial prefrontal cortex in the macaque monkey
    • Carmichael, S.T., Price, J.L., Architectonic subdivision of the orbital and medial prefrontal cortex in the macaque monkey. J. Comp. Neurol. 346:3 (1994), 366–402.
    • (1994) J. Comp. Neurol. , vol.346 , Issue.3 , pp. 366-402
    • Carmichael, S.T.1    Price, J.L.2
  • 8
    • 0030175198 scopus 로고    scopus 로고
    • AFNI: software for analysis and visualization of functional magnetic resonance neuroimages
    • Cox, R.W., AFNI: software for analysis and visualization of functional magnetic resonance neuroimages. Comput. Biomed. Res. 29:3 (1996), 162–173.
    • (1996) Comput. Biomed. Res. , vol.29 , Issue.3 , pp. 162-173
    • Cox, R.W.1
  • 9
    • 61449206033 scopus 로고    scopus 로고
    • Registration based cortical thickness measurement
    • Das, S.R., Avants, B.B., Grossman, M., Gee, J.C., Registration based cortical thickness measurement. NeuroImage 45:3 (2009), 867–879.
    • (2009) NeuroImage , vol.45 , Issue.3 , pp. 867-879
    • Das, S.R.1    Avants, B.B.2    Grossman, M.3    Gee, J.C.4
  • 10
    • 1242316309 scopus 로고    scopus 로고
    • Optimization of the 3D MDEFT sequence for anatomical brain imaging: technical implications at 1.5 and 3 T
    • Deichmann, R., Schwarzbauer, C., Turner, R., Optimization of the 3D MDEFT sequence for anatomical brain imaging: technical implications at 1.5 and 3 T. NeuroImage 21:2 (2004), 757–767.
    • (2004) NeuroImage , vol.21 , Issue.2 , pp. 757-767
    • Deichmann, R.1    Schwarzbauer, C.2    Turner, R.3
  • 11
    • 0034718613 scopus 로고    scopus 로고
    • Measuring the thickness of the human cerebral cortex from magnetic resonance images
    • Fischl, B., Dale, A.M., Measuring the thickness of the human cerebral cortex from magnetic resonance images. Proc. Natl. Acad. Sci. 97:20 (2000), 11050–11055.
    • (2000) Proc. Natl. Acad. Sci. , vol.97 , Issue.20 , pp. 11050-11055
    • Fischl, B.1    Dale, A.M.2
  • 12
    • 0032799993 scopus 로고    scopus 로고
    • Cortical surface-based analysis: ii: inflation, flattening, and a surface-based coordinate system
    • Fischl, B., Sereno, M.I., Dale, A.M., Cortical surface-based analysis: ii: inflation, flattening, and a surface-based coordinate system. NeuroImage 9:2 (1999), 195–207.
    • (1999) NeuroImage , vol.9 , Issue.2 , pp. 195-207
    • Fischl, B.1    Sereno, M.I.2    Dale, A.M.3
  • 13
    • 0033989174 scopus 로고    scopus 로고
    • Gender differences in brain volume and size of corpus callosum and amygdala of rhesus monkey measured from MRI images
    • Franklin, M.S., Kraemer, G.W., Shelton, S.E., Baker, E., Kalin, N.H., Uno, H., Gender differences in brain volume and size of corpus callosum and amygdala of rhesus monkey measured from MRI images. Brain Res. 852:2 (2000), 263–267.
    • (2000) Brain Res. , vol.852 , Issue.2 , pp. 263-267
    • Franklin, M.S.1    Kraemer, G.W.2    Shelton, S.E.3    Baker, E.4    Kalin, N.H.5    Uno, H.6
  • 14
    • 79952700943 scopus 로고    scopus 로고
    • An MRI based average macaque monkey stereotaxic atlas and space (MNI monkey space)
    • Frey, S., Pandya, D.N., Chakravarty, M.M., Bailey, L., Petrides, M., Collins, D.L., An MRI based average macaque monkey stereotaxic atlas and space (MNI monkey space). NeuroImage 55:4 (2011), 1435–1442.
    • (2011) NeuroImage , vol.55 , Issue.4 , pp. 1435-1442
    • Frey, S.1    Pandya, D.N.2    Chakravarty, M.M.3    Bailey, L.4    Petrides, M.5    Collins, D.L.6
  • 17
    • 0001872573 scopus 로고
    • The structure and functions of the cerebellum examined by a new method
    • Horsley, V., Clarke, R.H., The structure and functions of the cerebellum examined by a new method. Brain 31:1 (1908), 45–124.
    • (1908) Brain , vol.31 , Issue.1 , pp. 45-124
    • Horsley, V.1    Clarke, R.H.2
  • 20
    • 79955111556 scopus 로고    scopus 로고
    • fMRI of the face-processing network in the ventral temporal lobe of awake and anesthetized macaques
    • Ku, S.P., Tolias, A.S., Logothetis, N.K., Goense, J., fMRI of the face-processing network in the ventral temporal lobe of awake and anesthetized macaques. Neuron 70:2 (2011), 352–362.
    • (2011) Neuron , vol.70 , Issue.2 , pp. 352-362
    • Ku, S.P.1    Tolias, A.S.2    Logothetis, N.K.3    Goense, J.4
  • 21
    • 84888349266 scopus 로고    scopus 로고
    • Parallel, multi-stage processing of colors, faces and shapes in macaque inferior temporal cortex
    • Lafer-Sousa, R., Conway, B.R., Parallel, multi-stage processing of colors, faces and shapes in macaque inferior temporal cortex. Nat. Neurosci. 16:12 (2013), 1870–1878.
    • (2013) Nat. Neurosci. , vol.16 , Issue.12 , pp. 1870-1878
    • Lafer-Sousa, R.1    Conway, B.R.2
  • 23
    • 11444258330 scopus 로고    scopus 로고
    • Efficient implementation of marching cubes’ cases with topological guarantees
    • Lewiner, T., Lopes, H., Vieira, A.W., Tavares, G., Efficient implementation of marching cubes’ cases with topological guarantees. J. Graph. Tools 8:2 (2003), 1–15.
    • (2003) J. Graph. Tools , vol.8 , Issue.2 , pp. 1-15
    • Lewiner, T.1    Lopes, H.2    Vieira, A.W.3    Tavares, G.4
  • 27
    • 0023501883 scopus 로고
    • Topographic organization of the middle temporal visual area in the macaque monkey: representational biases and the relationship to callosal connections and myeloarchitectonic boundaries
    • Maunsell, J.H., van Essen, D.C., Topographic organization of the middle temporal visual area in the macaque monkey: representational biases and the relationship to callosal connections and myeloarchitectonic boundaries. J. Comp. Neurol. 266:4 (1987), 535–555.
    • (1987) J. Comp. Neurol. , vol.266 , Issue.4 , pp. 535-555
    • Maunsell, J.H.1    van Essen, D.C.2
  • 30
    • 0034863960 scopus 로고    scopus 로고
    • Medical image processing, analysis and visualization in clinical research. In Computer-Based Medical Systems. CBMS 2001. In: Proceedings of the 14th IEEE Symposium on (pp. 381-386). IEEE., 2001
    • McAuliffe, M. J., Lalonde, F. M., McGarry, D., Gandler, W., Csaky, K., &Trus, B. L. (2001). Medical image processing, analysis and visualization in clinical research. In Computer-Based Medical Systems, 2001. CBMS 2001. In: Proceedings of the 14th IEEE Symposium on (pp. 381-386). IEEE.
    • (2001)
    • McAuliffe, M.J.1    Lalonde, F.M.2    McGarry, D.3    Gandler, W.4    Csaky, K.5    Trus, B.L.6
  • 31
    • 65649094839 scopus 로고    scopus 로고
    • Neural representations of faces and body parts in macaque and human cortex: a comparative FMRI study
    • Pinsk, M.A., Arcaro, M., Weiner, K.S., Kalkus, J.F., Inati, S.J., Gross, C.G., Kastner, S., Neural representations of faces and body parts in macaque and human cortex: a comparative FMRI study. J. Neurophysiol. 101:5 (2009), 2581–2600.
    • (2009) J. Neurophysiol. , vol.101 , Issue.5 , pp. 2581-2600
    • Pinsk, M.A.1    Arcaro, M.2    Weiner, K.S.3    Kalkus, J.F.4    Inati, S.J.5    Gross, C.G.6    Kastner, S.7
  • 32
    • 77954951777 scopus 로고    scopus 로고
    • Creating a population-averaged standard brain template for Japanese macaques (M. fuscata)
    • Quallo, M.M., Price, C.J., Ueno, K., Asamizuya, T., Cheng, K., Lemon, R.N., Iriki, A., Creating a population-averaged standard brain template for Japanese macaques (M. fuscata). NeuroImage 52:4 (2010), 1328–1333.
    • (2010) NeuroImage , vol.52 , Issue.4 , pp. 1328-1333
    • Quallo, M.M.1    Price, C.J.2    Ueno, K.3    Asamizuya, T.4    Cheng, K.5    Lemon, R.N.6    Iriki, A.7
  • 34
    • 0031610563 scopus 로고    scopus 로고
    • Evolution of the cerebellum in primates: differences in relative volume among monkeys, apes and humans
    • Rilling, J.K., Insel, T.R., Evolution of the cerebellum in primates: differences in relative volume among monkeys, apes and humans. Brain, Behav. Evol. 52:6 (1998), 308–314.
    • (1998) Brain, Behav. Evol. , vol.52 , Issue.6 , pp. 308-314
    • Rilling, J.K.1    Insel, T.R.2
  • 36
    • 37249050191 scopus 로고    scopus 로고
    • A combined MRI and histology atlas of the rhesus monkey brain in stereotaxic coordinates
    • Academic Press
    • Saleem, K.S., Logothetis, N.K., A combined MRI and histology atlas of the rhesus monkey brain in stereotaxic coordinates. 2012, Academic Press.
    • (2012)
    • Saleem, K.S.1    Logothetis, N.K.2
  • 37
    • 0017904978 scopus 로고
    • The Horsley–Clarke stereotaxic apparatus
    • Schurr, P.H., Merrington, W.R., The Horsley–Clarke stereotaxic apparatus. Br. J. Surg. 65:1 (1978), 33–36.
    • (1978) Br. J. Surg. , vol.65 , Issue.1 , pp. 33-36
    • Schurr, P.H.1    Merrington, W.R.2
  • 38
    • 84971317623 scopus 로고    scopus 로고
    • Longitudinal Analysis of the Developing Rhesus Monkey Brain Using Magnetic Resonance Imaging: Birth to Adulthood. Brain Structure and Function, 221(5). Springer Nature
    • JScott, J A., Grayson, D., Fletcher E., Lee A., Bauman M. D., Schumann C. M., Buonocore M. H., and Amaral A.G. (2015) Longitudinal Analysis of the Developing Rhesus Monkey Brain Using Magnetic Resonance Imaging: Birth to Adulthood. Brain Structure and Function, 221(5). Springer Nature: pp. 2847–71.
    • (2015) , pp. 2847-71
    • JScott, J.A.1    Grayson, D.2    Fletcher, E.3    Lee, A.4    Bauman, M.D.5    Schumann, C.M.6    Buonocore, M.H.7    Amaral, A.G.8
  • 39
    • 0036828879 scopus 로고    scopus 로고
    • Fast robust automated brain extraction
    • Smith, S.M., Fast robust automated brain extraction. Human. Brain Mapp. 17:3 (2002), 143–155.
    • (2002) Human. Brain Mapp. , vol.17 , Issue.3 , pp. 143-155
    • Smith, S.M.1
  • 40
    • 85044165004 scopus 로고
    • Co-planar stereotaxic atlas of the human brain. 3-Dimensional proportional system: an approach to cerebral imaging.
    • Talairach, J., & Tournoux, P., 1988.. Co-planar stereotaxic atlas of the human brain. 3-Dimensional proportional system: an approach to cerebral imaging.
    • (1988)
    • Talairach, J.1    Tournoux, P.2
  • 42
    • 58049220231 scopus 로고    scopus 로고
    • Comparing face patch systems in macaques and humans
    • Tsao, D.Y., Moeller, S., Freiwald, W.A., Comparing face patch systems in macaques and humans. Proc. Natl. Acad. Sci. 105:49 (2008), 19514–19519.
    • (2008) Proc. Natl. Acad. Sci. , vol.105 , Issue.49 , pp. 19514-19519
    • Tsao, D.Y.1    Moeller, S.2    Freiwald, W.A.3
  • 43
    • 84903515315 scopus 로고    scopus 로고
    • Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements
    • Tustison, Nicholas, J., et al. Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements. NeuroImage 99:2014 (2014), 166–179.
    • (2014) NeuroImage , vol.99 , Issue.2014 , pp. 166-179
    • Tustison1    Nicholas, J.2
  • 44
    • 77953171016 scopus 로고    scopus 로고
    • N4ITK: improved N3 bias correction
    • (29.6)
    • Tustison, Nicholas, J., et al. N4ITK: improved N3 bias correction. IEEE Trans. Med. Imaging, 2010, 1310–1320 (29.6).
    • (2010) IEEE Trans. Med. Imaging , pp. 1310-1320
    • Tustison1    Nicholas, J.2
  • 47
    • 85044167924 scopus 로고    scopus 로고
    • Cortical parcellations of the Macaque monkey analyzed on surface-based atlases. Cerebral Cortex, bhr290.
    • Van Essen, D.C., Glasser, M.F., Dierker, D. and Harwell, J., 2011. Cortical parcellations of the Macaque monkey analyzed on surface-based atlases. Cerebral Cortex, bhr290.
    • (2011)
    • Van Essen, D.C.1    Glasser, M.F.2    Dierker, D.3    Harwell, J.4
  • 48
    • 0021247309 scopus 로고
    • The visual field representation in striate cortex of the macaque monkey: asymmetries, anisotropies, and individual variability
    • Van Essen, D.C., Newsome, W.T., Maunsell, J.H., The visual field representation in striate cortex of the macaque monkey: asymmetries, anisotropies, and individual variability. Vis. Res. 24:5 (1984), 429–448.
    • (1984) Vis. Res. , vol.24 , Issue.5 , pp. 429-448
    • Van Essen, D.C.1    Newsome, W.T.2    Maunsell, J.H.3
  • 51
    • 0004528240 scopus 로고
    • Phylogeny of rhesus monkeys (Macaca mulatta) as revealed by mitochondrial DNA restriction enzyme analysis
    • Zhang, Y.P., Shi, L.M., Phylogeny of rhesus monkeys (Macaca mulatta) as revealed by mitochondrial DNA restriction enzyme analysis. Int. J. Primatol. 14:4 (1993), 587–605.
    • (1993) Int. J. Primatol. , vol.14 , Issue.4 , pp. 587-605
    • Zhang, Y.P.1    Shi, L.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.