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Volumn 14, Issue 1, 2013, Pages

HTQC: A fast quality control toolkit for Illumina sequencing data

Author keywords

[No Author keywords available]

Indexed keywords

FILTRATION METHODS; GENOME RESEARCH; HIGH-THROUGHPUT; ILLUMINA; LOW QUALITIES; QUALITY ASSESSMENT;

EID: 84873041419     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-14-33     Document Type: Article
Times cited : (143)

References (9)
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    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - the next generation
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    • Metzker ML. Sequencing technologies - the next generation. Nat Rev Genet 2010, 11(1):31-46. 10.1038/nrg2626, 19997069.
    • (2010) Nat Rev Genet , vol.11 , Issue.1 , pp. 31-46
    • Metzker, M.L.1
  • 2
    • 52649157765 scopus 로고    scopus 로고
    • Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
    • 10.1093/nar/gkn425, 2532726, 18660515
    • Dohm JC, Lottaz C, Borodina T, Himmelbauer H. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res 2008, 36(16):e105. 10.1093/nar/gkn425, 2532726, 18660515.
    • (2008) Nucleic Acids Res , vol.36 , Issue.16
    • Dohm, J.C.1    Lottaz, C.2    Borodina, T.3    Himmelbauer, H.4
  • 4
    • 84873720871 scopus 로고    scopus 로고
    • FastQC http://www.bioinformatics.babraham.ac.uk/projects/fastqc/.
    • FastQC
  • 5
    • 84863054719 scopus 로고    scopus 로고
    • BIGpre: a quality assessment package for next-generation sequencing data
    • 10.1016/S1672-0229(11)60027-2, 22289480
    • Zhang T, Luo Y, Liu K, Pan L, Zhang B, Yu J, Hu S. BIGpre: a quality assessment package for next-generation sequencing data. Genomics Proteomics Bioinformatics 2011, 9(6):238-244. 10.1016/S1672-0229(11)60027-2, 22289480.
    • (2011) Genomics Proteomics Bioinformatics , vol.9 , Issue.6 , pp. 238-244
    • Zhang, T.1    Luo, Y.2    Liu, K.3    Pan, L.4    Zhang, B.5    Yu, J.6    Hu, S.7
  • 6
    • 77957151956 scopus 로고    scopus 로고
    • SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
    • 10.1186/1471-2105-11-485, 2956736, 20875133
    • Cox MP, Peterson DA, Biggs PJ. SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data. BMC Bioinformatics 2010, 11:485. 10.1186/1471-2105-11-485, 2956736, 20875133.
    • (2010) BMC Bioinformatics , vol.11 , pp. 485
    • Cox, M.P.1    Peterson, D.A.2    Biggs, P.J.3
  • 8
    • 77951226627 scopus 로고    scopus 로고
    • The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
    • 10.1093/nar/gkp1137, 2847217, 20015970
    • Cock PJ, Fields CJ, Goto N, Heuer ML, Rice PM. The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Res 2010, 38(6):1767-1771. 10.1093/nar/gkp1137, 2847217, 20015970.
    • (2010) Nucleic Acids Res , vol.38 , Issue.6 , pp. 1767-1771
    • Cock, P.J.1    Fields, C.J.2    Goto, N.3    Heuer, M.L.4    Rice, P.M.5
  • 9
    • 84873711204 scopus 로고    scopus 로고
    • Illumina, Inc
    • CASAVA v1.8 Changes 2011, Illumina, Inc, http://support.illumina.com/downloads/casava_18_changes.ilmn.
    • (2011) CASAVA v1.8 Changes


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.