Corrected data re-harvested: Curating literature in the era of networked biodiversity informatics

Biodiversity Data Journal

Volumn 3, Issue 1, 2015, Pages

  Miller, Jeremy A ^a,b   Georgiev, Teodor ^c   Stoev, Pavel ^d   Sautter, Guido ^b   Penev, Lyubomir ^e  

^a NATURALIS BIODIVERSITY CENTER   (Netherlands)

^b Plaziorg   (Switzerland)

^c Pensoft Publishers   (Bulgaria)

^d BULGARIAN ACADEMY OF SCIENCES   (Bulgaria)

^e INSTITUTE OF BIODIVERSITY AND ECOSYSTEM RESEARCH   (Bulgaria)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85018195713     PISSN: None     EISSN: 13142828     Source Type: Journal    
DOI: 10.3897/BDJ.3.e4552     Document Type: Editorial

References (27)

1. Arzberger P, Schroeder P, Beaulieu A, Bowker G, Casey K, Laaksonen L, Moorman D, Uhlir P, Wouters P (2004) Promoting Access to Public Research Data for Scientific, Economic, and Social Development. Data Science Journal 3: 135-152. DOI: 10.2481/ dsj.3.135
2. Belbin L, Daly J, Hirsch T, Hobern D, LaSalle J (2013) A specialist's audit of aggregated occurrence records: An 'aggregator's' perspective. ZooKeys 305: 67-76. DOI: 10.3897/ zookeys.305.5438
3. Berendsohn W, Chavan V, Macklin J (2010) Recommendations of the GBIF task group on the global strategy and action plan for the mobilization of natural history collections data. Biodiversity Informatics 7: 67-71
4. Candek K, Gregoric M, Kostanjšek R, Frick H, Kropf C, Kuntner M (2013) Targeting a portion of central European spider diversity for permanent preservation. Biodiversity Data Journal 1: e980. DOI: 10.3897/bdj.1.e980
5. Candek K, Gregoric M, Kostanjšek R, Frick H, Kropf C, Kuntner M (2015) Corrigendum: Targeting a portion of central European spider diversity for permanent preservation. Biodiversity Data Journal 3: e4301. DOI: 10.3897/BDJ.3.e4301
6. Chavan V, Penev L (2011) The data paper: a mechanism to incentivize data publishing in biodiversity science. BMC Bioinformatics 12: S2. DOI: 10.1186/1471-2105-12-S15-S2
7. Faulwetter S, Markantonatou V, Pavloudi C, Papageorgiou N, Keklikoglou K, Chatzinikolaou E, Pafilis E, Chatzigeorgiou G, Vasileiadou K, Dailianis T, Fanini L, Koulouri P, Arvanitidis C (2014) Polytraits: A database on biological traits of marine polychaetes. Biodiversity Data Journal 2: e1024. DOI: 10.3897/bdj.2.e1024
8. GBIF (2010) Darwin Core Archives-How-to Guide, version 1, released on 1 March 2011, (contributed by Remsen D, Braak, K, Döring M, Robertson, T). Global Biodiversity Information Facility, Copenhagen, 21 pp. URL: http://links.gbif.org/ gbif_dwca_how_to_guide_v1
9. Hardisty A, Roberts D, The Biodiversity Informatics Community (2013) A decadal view of biodiversity informatics: challenges and priorities. BMC Ecology 13: 16. DOI: 10.1186/1472-6785-13-16
10. Hjarding A, Tolley K, Burgess N (2014) Red List assessments of East African chameleons: a case study of why we need experts. Oryx FirstView: 1-7. DOI: 10.1017/ s0030605313001427
11. Leonelli S (2014) What difference does quantity make? On the epistemology of Big Data in biology. Big Data & Society 1 (1): 1-11. DOI: 10.1177/2053951714534395
12. Mesibov R (2013) A specialist's audit of aggregated occurrence records. ZooKeys 293: 1-18. DOI: 10.3897/zookeys.293.5111
13. Miller J, Dikow T, Agosti D, Sautter G, Catapano T, Penev L, Zhang Z, Pentcheff D, Pyle R, Blum S, Parr C, Freeland C, Garnett T, Ford LS, Muller B, Smith L, Strader G, Georgiev T, Bénichou L (2012) From taxonomic literature to cybertaxonomic content. BMC Biology 10 (1): 87. DOI: 10.1186/1741-7007-10-87
14. Moritz T, Krishnan S, Roberts D, Ingwersen P, Agosti D, Penev L, Cockerill M, Chavan V (2011) Towards mainstreaming of biodiversity data publishing: recommendations of the GBIF Data Publishing Framework Task Group. BMC Bioinformatics 12: S1. DOI: 10.1186/1471-2105-12-s15-s1
15. Morris R, Dou L, Hanken J, Kelly M, Lowery D, Ludascher B, Macklin J, Morris P (2013) Semantic Annotation of Mutable Data. PLoS ONE 8 (11): e76093. DOI: 10.1371/ journal.pone.0076093
16. Penev L, Catapano T, Agosti D, Georgiev T, Sautter G, Stoev P (2012) Implementation of TaxPub, an NLM DTD extension for domain-specific markup in taxonomy, from the experience of a biodiversity publisher. Journal Article Tag Suite Conference (JATS-Con). Proceedings 2012 [Internet], Bethesda (MD). National Center for Biotechnology Information (US) URL: http://www.ncbi.nlm.nih.gov/books/NBK100351/
17. Penev L, Erwin T, Miller J, Chavan V, Moritz T, Griswold C (2009) Publication and dissemination of datasets in taxonomy: ZooKeys working example. ZooKeys 11: 1-8. DOI: 10.3897/zookeys.11.210
18. Penev L, Lyal C, Weitzman A, Morse D, King D, Sautter G, Georgiev T, Morris R, Catapano T, Agosti D (2011a) XML schemas and mark-up practices of taxonomic literature. ZooKeys 150: 89-116. DOI: 10.3897/zookeys.150.2213
19. Penev L, Hagedorn G, Mietchen D, Georgiev T, Stoev P, Sautter G, Agosti D, Plank A, Balke M, Hendrich L, Erwin T (2011b) Interlinking journal and wiki publications through joint citation: Working examples from ZooKeys and Plazi on Species-ID. ZooKeys 90: 1-12. DOI: 10.3897/zookeys.90.1369
20. Penev L, Erwin T, Thompson FC, Sues H, Engel M, Agosti D, Pyle R, Ivie M, Assmann T, Henry T, Miller J, Ananjeva N, Casale A, Lourenco W, Golovatch S, Fagerholm H, Taiti S, Alonso-Zarazaga M, Nieukerken Ev (2008) ZooKeys, unlocking Earth's incredible biodiversity and building a sustainable bridge into the public domain: From "print-based" to "web-based" taxonomy, systematics, and natural history. ZooKeys Editorial Opening Paper. ZooKeys 1: 1-7. DOI: 10.3897/zookeys.1.11
21. Penev L, Agosti D, Georgiev T, Catapano T, Miller J, Blagoderov V, Roberts D, Smith V, Brake I, Ryrcroft S, Scott B, Johnson N, Morris R, Sautter G, Chavan V, Robertson T, Remsen D, Stoev P, Parr C, Knapp S, Kress WJ, Thompson F, Erwin T (2010) Semantic tagging of and semantic enhancements to systematics papers: ZooKeys working examples. ZooKeys 50: 1-16. DOI: 10.3897/zookeys.50.538
22. Robertson T, Döring M, Guralnick R, Bloom D, Wieczorek J, Braak K, Otegui J, Russell L, Desmet P (2014) The GBIF Integrated Publishing Toolkit: Facilitating the Efficient Publishing of Biodiversity Data on the Internet. PLoS ONE 9 (8): e102623. DOI: 10.1371/journal.pone.0102623
23. Smith V, Georgiev T, Stoev P, Biserkov J, Miller J, Livermore L, Baker E, Mietchen D, Couvreur TP, Mueller G, Dikow T, Helgen K, Frank J, Agosti D, Roberts D, Penev L (2013) Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal. Biodiversity Data Journal 1: e995. DOI: 10.3897/BDJ.1.e995
24. Thessen A, Patterson D (2011) Data issues in the life sciences. ZooKeys 150: 15-51. DOI: 10.3897/zookeys.150.1766
25. Tschöpe O, Macklin J, Morris R, Suhrbier L, Berendsohn W (2013) Annotating biodiversity data via the Internet. Taxon 62 (6): 1248-1258. DOI: 10.12705/626.4
26. Wang Z, Dong H, Kelly M, Macklin J, Morris P, Morris R (2009) 2009 WRI World Congress Computer Science and Information Engineering., 3. 2009 WRI World Congress on Computer Science and Information Engineering, Los Alamitos, California, 731-735 pp. URL: http://dx.doi.org/10.1109/csie.2009.948 DOI: 10.1109/csie.2009.948
27. Wieczorek J, Bloom D, Guralnick R, Blum S, Döring M, Giovanni R, Robertson T, Vieglais D (2012) Darwin Core: An Evolving Community-Developed Biodiversity Data Standard. PLoS ONE 7 (1): e29715. DOI: 10.1371/journal.pone.0029715