-
1
-
-
33751429903
-
Using landscape and depth gradients to decouple the impact of correlated environmental variables on soil microbial community composition
-
Allison V, Yermakov Z, Miller R, Jastrow J, Matamala R (2007) Using landscape and depth gradients to decouple the impact of correlated environmental variables on soil microbial community composition. Soil Biology and Biochemistry, 39, 505–516.
-
(2007)
Soil Biology and Biochemistry
, vol.39
, pp. 505-516
-
-
Allison, V.1
Yermakov, Z.2
Miller, R.3
Jastrow, J.4
Matamala, R.5
-
2
-
-
84910141317
-
Soil bacterial diversity in degraded and restored lands of Northeast Brazil
-
Araújo ASF, Borges CD, Tsai SM, Cesarz S, Eisenhauer N (2014) Soil bacterial diversity in degraded and restored lands of Northeast Brazil. Antonie van Leeuwenhoek, 106, 891–899.
-
(2014)
Antonie van Leeuwenhoek
, vol.106
, pp. 891-899
-
-
Araújo, A.S.F.1
Borges, C.D.2
Tsai, S.M.3
Cesarz, S.4
Eisenhauer, N.5
-
4
-
-
84958260737
-
Ecological restoration success: a policy analysis understanding
-
Baker S, Eckerberg K (2016) Ecological restoration success: a policy analysis understanding. Restoration Ecology, 24, 284–290.
-
(2016)
Restoration Ecology
, vol.24
, pp. 284-290
-
-
Baker, S.1
Eckerberg, K.2
-
5
-
-
45549099917
-
Recovery of soil organic matter, organic matter turnover and nitrogen cycling in a post-mining forest rehabilitation chronosequence
-
Banning N, Grant C, Jones D, Murphy D (2008) Recovery of soil organic matter, organic matter turnover and nitrogen cycling in a post-mining forest rehabilitation chronosequence. Soil Biology and Biochemistry, 40, 2021–2031.
-
(2008)
Soil Biology and Biochemistry
, vol.40
, pp. 2021-2031
-
-
Banning, N.1
Grant, C.2
Jones, D.3
Murphy, D.4
-
6
-
-
80052726244
-
Soil microbial community successional patterns during forest ecosystem restoration
-
Banning NC, Gleeson DB, Grigg AH et al. (2011) Soil microbial community successional patterns during forest ecosystem restoration. Applied and Environmental Microbiology, 77, 6158–6164.
-
(2011)
Applied and Environmental Microbiology
, vol.77
, pp. 6158-6164
-
-
Banning, N.C.1
Gleeson, D.B.2
Grigg, A.H.3
-
7
-
-
84954402041
-
The ecology of environmental DNA and implications for conservation genetics
-
Barnes MA, Turner CR (2016) The ecology of environmental DNA and implications for conservation genetics. Conservation Genetics, 17, 1–17.
-
(2016)
Conservation Genetics
, vol.17
, pp. 1-17
-
-
Barnes, M.A.1
Turner, C.R.2
-
8
-
-
73149103678
-
Soil metaproteomics: a review of an emerging environmental science. Significance, methodology and perspectives
-
Bastida F, Moreno J, Nicolás C, Hernandez T, Garcia C (2009) Soil metaproteomics: a review of an emerging environmental science. Significance, methodology and perspectives. European Journal of Soil Science, 60, 845–859.
-
(2009)
European Journal of Soil Science
, vol.60
, pp. 845-859
-
-
Bastida, F.1
Moreno, J.2
Nicolás, C.3
Hernandez, T.4
Garcia, C.5
-
9
-
-
69549122036
-
Enhancement of biodiversity and ecosystem services by ecological restoration: a meta-analysis
-
Benayas JMR, Newton AC, Diaz A, Bullock JM (2009) Enhancement of biodiversity and ecosystem services by ecological restoration: a meta-analysis. Science, 325, 1121–1124.
-
(2009)
Science
, vol.325
, pp. 1121-1124
-
-
Benayas, J.M.R.1
Newton, A.C.2
Diaz, A.3
Bullock, J.M.4
-
10
-
-
84991529237
-
Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database
-
Bissett A, Fitzgerald A, Thys M et al. (2016) Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database. GigaScience, 5, 1–11.
-
(2016)
GigaScience
, vol.5
, pp. 1-11
-
-
Bissett, A.1
Fitzgerald, A.2
Thys, M.3
-
11
-
-
84855945677
-
Little left to lose: deforestation and forest degradation in Australia since European colonisation
-
Bradshaw CJA (2012) Little left to lose: deforestation and forest degradation in Australia since European colonisation. Journal of Plant Ecology, 5, 109–120.
-
(2012)
Journal of Plant Ecology
, vol.5
, pp. 109-120
-
-
Bradshaw, C.J.A.1
-
12
-
-
84899769784
-
Considerations for monitoring and evaluating forest restoration
-
Burton PJ (2014) Considerations for monitoring and evaluating forest restoration. Journal of Sustainable Forestry, 33, S149–S160.
-
(2014)
Journal of Sustainable Forestry
, vol.33
, pp. S149-S160
-
-
Burton, P.J.1
-
13
-
-
77953018255
-
Global biodiversity: indicators of recent declines
-
Butchart SH, Walpole M, Collen B et al. (2010) Global biodiversity: indicators of recent declines. Science, 328, 1164–1168.
-
(2010)
Science
, vol.328
, pp. 1164-1168
-
-
Butchart, S.H.1
Walpole, M.2
Collen, B.3
-
14
-
-
84863981120
-
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
-
Caporaso JG, Lauber CL, Walters WA et al. (2012) Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. The ISME Journal, 6, 1621–1624.
-
(2012)
The ISME Journal
, vol.6
, pp. 1621-1624
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
-
15
-
-
84969776627
-
Pastures to woodlands: changes in soil microbial communities and carbon following reforestation
-
Cavagnaro T, Cunningham S, Fitzpatrick S (2016) Pastures to woodlands: changes in soil microbial communities and carbon following reforestation. Applied Soil Ecology, 107, 24–32.
-
(2016)
Applied Soil Ecology
, vol.107
, pp. 24-32
-
-
Cavagnaro, T.1
Cunningham, S.2
Fitzpatrick, S.3
-
16
-
-
84932120781
-
Reintroduction of locally extinct vertebrates impacts arid soil fungal communities
-
Clarke LJ, Weyrich LS, Cooper A (2015) Reintroduction of locally extinct vertebrates impacts arid soil fungal communities. Molecular Ecology, 24, 3194–3205.
-
(2015)
Molecular Ecology
, vol.24
, pp. 3194-3205
-
-
Clarke, L.J.1
Weyrich, L.S.2
Cooper, A.3
-
17
-
-
84922809677
-
Carbon sequestration is related to mycorrhizal fungal community shifts during long-term succession in boreal forests
-
Clemmensen KE, Finlay RD, Dahlberg A et al. (2015) Carbon sequestration is related to mycorrhizal fungal community shifts during long-term succession in boreal forests. New Phytologist, 205, 1525–1536.
-
(2015)
New Phytologist
, vol.205
, pp. 1525-1536
-
-
Clemmensen, K.E.1
Finlay, R.D.2
Dahlberg, A.3
-
18
-
-
84907835415
-
Taking the measure of change
-
Collen B, Nicholson E (2014) Taking the measure of change. Science, 346, 166–167.
-
(2014)
Science
, vol.346
, pp. 166-167
-
-
Collen, B.1
Nicholson, E.2
-
19
-
-
84970016046
-
A global meta-analysis on the ecological drivers of forest restoration success
-
Crouzeilles R, Curran M, Ferreira MS et al. (2016) A global meta-analysis on the ecological drivers of forest restoration success. Nature Communications, 7, 440–448.
-
(2016)
Nature Communications
, vol.7
, pp. 440-448
-
-
Crouzeilles, R.1
Curran, M.2
Ferreira, M.S.3
-
20
-
-
84937641073
-
Balancing the environmental benefits of reforestation in agricultural regions
-
Cunningham S, Mac Nally R, Baker P et al. (2015) Balancing the environmental benefits of reforestation in agricultural regions. Perspectives in Plant Ecology, Evolution and Systematics, 17, 301–317.
-
(2015)
Perspectives in Plant Ecology, Evolution and Systematics
, vol.17
, pp. 301-317
-
-
Cunningham, S.1
Mac Nally, R.2
Baker, P.3
-
21
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis TZ, Hugenholtz P, Larsen N et al. (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied and Environmental Microbiology, 72, 5069–5072.
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
-
22
-
-
84884904719
-
UPARSE: highly accurate OTU sequences from microbial amplicon reads
-
Edgar RC (2013) UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nature Methods, 10, 996–998.
-
(2013)
Nature Methods
, vol.10
, pp. 996-998
-
-
Edgar, R.C.1
-
24
-
-
33947236971
-
Toward an ecological classification of soil bacteria
-
Fierer N, Bradford MA, Jackson RB (2007) Toward an ecological classification of soil bacteria. Ecology, 88, 1354–1364.
-
(2007)
Ecology
, vol.88
, pp. 1354-1364
-
-
Fierer, N.1
Bradford, M.A.2
Jackson, R.B.3
-
25
-
-
85019782844
-
-
AEKOS data portal, University of Adelaide.
-
Gellie NJC, Mills JG, Breed MF, Lowe AJ (2017a) Revegetation rewilds the soil bacterial microbiome of an old field. Part 1: OTU raw data matrix, version 1.0. doi:10.4227/05/5878480a91885 AEKOS data portal, University of Adelaide.
-
(2017)
Revegetation rewilds the soil bacterial microbiome of an old field. Part 1: OTU raw data matrix, version 1.0
-
-
Gellie, N.J.C.1
Mills, J.G.2
Breed, M.F.3
Lowe, A.J.4
-
26
-
-
85019782844
-
-
AEKOS data portal, University of Adelaide.
-
Gellie NJC, Mills JG, Breed MF, Lowe AJ (2017b) Revegetation rewilds the soil bacterial microbiome of an old field. Part 2: soil chemistry, version 2.0. doi: 10.4227/05/587d63e2dd056 AEKOS data portal, University of Adelaide.
-
(2017)
Revegetation rewilds the soil bacterial microbiome of an old field. Part 2: soil chemistry, version 2.0
-
-
Gellie, N.J.C.1
Mills, J.G.2
Breed, M.F.3
Lowe, A.J.4
-
27
-
-
78650016654
-
Soil carbon and litter development along a reconstructed biodiverse forest chronosequence of South-Western Australia
-
George S, Kelly R, Greenwood P, Tibbett M (2010) Soil carbon and litter development along a reconstructed biodiverse forest chronosequence of South-Western Australia. Biogeochemistry, 101, 197–209.
-
(2010)
Biogeochemistry
, vol.101
, pp. 197-209
-
-
George, S.1
Kelly, R.2
Greenwood, P.3
Tibbett, M.4
-
28
-
-
84982953236
-
Compositional analysis: a valid approach to analyze microbiome high-throughput sequencing data
-
Gloor GB, Reid G (2016) Compositional analysis: a valid approach to analyze microbiome high-throughput sequencing data. Canadian Journal of Microbiology, 62, 692–703.
-
(2016)
Canadian Journal of Microbiology
, vol.62
, pp. 692-703
-
-
Gloor, G.B.1
Reid, G.2
-
29
-
-
84954045877
-
Identifying centres of plant biodiversity in South Australia
-
Guerin GR, Biffin E, Baruch Z, Lowe AJ (2016) Identifying centres of plant biodiversity in South Australia. PLoS ONE, 11, e0144779.
-
(2016)
PLoS ONE
, vol.11
-
-
Guerin, G.R.1
Biffin, E.2
Baruch, Z.3
Lowe, A.J.4
-
31
-
-
70349459579
-
Changes in land use alter the structure of bacterial communities in Western Amazon soils
-
Jesus EC, Marsh TL, Tiedje JM, de S Moreira FM (2009) Changes in land use alter the structure of bacterial communities in Western Amazon soils. The ISME Journal, 3, 1004–1011.
-
(2009)
The ISME Journal
, vol.3
, pp. 1004-1011
-
-
Jesus, E.C.1
Marsh, T.L.2
Tiedje, J.M.3
de S Moreira, F.M.4
-
32
-
-
84883816660
-
Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding
-
Ji Y, Ashton L, Pedley SM et al. (2013) Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding. Ecology Letters, 16, 1245–1257.
-
(2013)
Ecology Letters
, vol.16
, pp. 1245-1257
-
-
Ji, Y.1
Ashton, L.2
Pedley, S.M.3
-
33
-
-
33646876613
-
Entropy and diversity
-
Jost L (2006) Entropy and diversity. Oikos, 113, 363–375.
-
(2006)
Oikos
, vol.113
, pp. 363-375
-
-
Jost, L.1
-
34
-
-
85034611088
-
The significance of soils and soil science towards realization of the United Nations Sustainable Development Goals
-
Keesstra SD, Quinton JN, van der Putten WH, Bardgett RD, Fresco LO (2016) The significance of soils and soil science towards realization of the United Nations Sustainable Development Goals. Soil, 2, 111.
-
(2016)
Soil
, vol.2
, pp. 111
-
-
Keesstra, S.D.1
Quinton, J.N.2
van der Putten, W.H.3
Bardgett, R.D.4
Fresco, L.O.5
-
35
-
-
0001857117
-
16S/23S rRNA sequencing
-
In, (eds, Stackebrandt E, Goodfellow M, John Wiley & Sons, New York, New York
-
Lane D (1991) 16S/23S rRNA sequencing. In: Nucleic Acid Techniques in Bacterial Systematics(eds Stackebrandt E, Goodfellow M), pp. 125–175. John Wiley & Sons, New York, New York.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 125-175
-
-
Lane, D.1
-
36
-
-
80054913451
-
FLASH: fast length adjustment of short reads to improve genome assemblies
-
Magoč T, Salzberg SL (2011) FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics, 27, 2957–2963.
-
(2011)
Bioinformatics
, vol.27
, pp. 2957-2963
-
-
Magoč, T.1
Salzberg, S.L.2
-
37
-
-
84873297219
-
Hurdles and opportunities for landscape-scale restoration
-
Menz MHM, Dixon KW, Hobbs RJ (2013) Hurdles and opportunities for landscape-scale restoration. Science, 339, 526–527.
-
(2013)
Science
, vol.339
, pp. 526-527
-
-
Menz, M.H.M.1
Dixon, K.W.2
Hobbs, R.J.3
-
38
-
-
84856465368
-
Structural and functional loss in restored wetland ecosystems
-
Moreno-Mateos D, Power ME, Comín FA, Yockteng R (2012) Structural and functional loss in restored wetland ecosystems. PLoS biology, 10, e1001247.
-
(2012)
PLoS biology
, vol.10
-
-
Moreno-Mateos, D.1
Power, M.E.2
Comín, F.A.3
Yockteng, R.4
-
40
-
-
33745787428
-
Soil microbial community composition as affected by restoration practices in California grassland
-
Potthoff M, Steenwerth KL, Jackson LE, Drenovsky RE, Scow KM, Joergensen RG (2006) Soil microbial community composition as affected by restoration practices in California grassland. Soil Biology and Biochemistry, 38, 1851–1860.
-
(2006)
Soil Biology and Biochemistry
, vol.38
, pp. 1851-1860
-
-
Potthoff, M.1
Steenwerth, K.L.2
Jackson, L.E.3
Drenovsky, R.E.4
Scow, K.M.5
Joergensen, R.G.6
-
41
-
-
0036925838
-
Determining reference conditions for management and restoration of temperate grassy woodlands: relationships among trees, topsoils and understorey flora in little-grazed remnants
-
Prober SM, Lunt ID, Thiele KR (2002) Determining reference conditions for management and restoration of temperate grassy woodlands: relationships among trees, topsoils and understorey flora in little-grazed remnants. Australian Journal of Botany, 50, 687–697.
-
(2002)
Australian Journal of Botany
, vol.50
, pp. 687-697
-
-
Prober, S.M.1
Lunt, I.D.2
Thiele, K.R.3
-
43
-
-
0035143535
-
Management of indigenous plant-microbe symbioses aids restoration of desertified ecosystems
-
Requena N, Perez-Solis E, Azcón-Aguilar C, Jeffries P, Barea JM (2001) Management of indigenous plant-microbe symbioses aids restoration of desertified ecosystems. Applied and Environmental Microbiology, 67, 495–498.
-
(2001)
Applied and Environmental Microbiology
, vol.67
, pp. 495-498
-
-
Requena, N.1
Perez-Solis, E.2
Azcón-Aguilar, C.3
Jeffries, P.4
Barea, J.M.5
-
44
-
-
84920714710
-
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
-
Rideout JR, He Y, Navas-Molina JA et al. (2014) Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences. PeerJ, 2, e545.
-
(2014)
PeerJ
, vol.2
-
-
Rideout, J.R.1
He, Y.2
Navas-Molina, J.A.3
-
45
-
-
84923607197
-
Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield
-
Rime T, Hartmann M, Brunner I et al. (2015) Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield. Molecular Ecology, 24, 1091–1108.
-
(2015)
Molecular Ecology
, vol.24
, pp. 1091-1108
-
-
Rime, T.1
Hartmann, M.2
Brunner, I.3
-
46
-
-
26444479194
-
Restoration success: how is it being measured?
-
Ruiz-Jaen MC, Aide TM (2005) Restoration success: how is it being measured? Restoration Ecology, 13, 569–577.
-
(2005)
Restoration Ecology
, vol.13
, pp. 569-577
-
-
Ruiz-Jaen, M.C.1
Aide, T.M.2
-
47
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology, 75, 7537–7541.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
-
48
-
-
84929192903
-
Committing to ecological restoration
-
Suding K, Higgs E, Palmer M et al. (2015) Committing to ecological restoration. Science, 348, 638–640.
-
(2015)
Science
, vol.348
, pp. 638-640
-
-
Suding, K.1
Higgs, E.2
Palmer, M.3
-
49
-
-
84859598363
-
Towards next-generation biodiversity assessment using DNA metabarcoding
-
Taberlet P, Coissac E, Pompanon F, Brochmann C, Willerslev E (2012) Towards next-generation biodiversity assessment using DNA metabarcoding. Molecular Ecology, 21, 2045–2050.
-
(2012)
Molecular Ecology
, vol.21
, pp. 2045-2050
-
-
Taberlet, P.1
Coissac, E.2
Pompanon, F.3
Brochmann, C.4
Willerslev, E.5
-
50
-
-
85028163034
-
Environmental DNA–an emerging tool in conservation for monitoring past and present biodiversity
-
Thomsen PF, Willerslev E (2015) Environmental DNA–an emerging tool in conservation for monitoring past and present biodiversity. Biological Conservation, 183, 4–18.
-
(2015)
Biological Conservation
, vol.183
, pp. 4-18
-
-
Thomsen, P.F.1
Willerslev, E.2
-
51
-
-
84958280498
-
Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding
-
Valentini A, Taberlet P, Miaud C et al. (2016) Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding. Molecular Ecology, 25, 929–942.
-
(2016)
Molecular Ecology
, vol.25
, pp. 929-942
-
-
Valentini, A.1
Taberlet, P.2
Miaud, C.3
-
52
-
-
34249302814
-
How reliable is the monitoring of permanent vegetation plots? A test with multiple observers
-
Vittoz P, Guisan A (2007) How reliable is the monitoring of permanent vegetation plots? A test with multiple observers. Journal of Vegetation Science, 18, 413–422.
-
(2007)
Journal of Vegetation Science
, vol.18
, pp. 413-422
-
-
Vittoz, P.1
Guisan, A.2
-
53
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology, 73, 5261–5267.
-
(2007)
Applied and Environmental Microbiology
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
54
-
-
79551521075
-
Effects of vegetation restoration on soil organic carbon sequestration at multiple scales in semi-arid Loess Plateau, China
-
Wang Y, Fu B, Lü Y, Chen L (2011) Effects of vegetation restoration on soil organic carbon sequestration at multiple scales in semi-arid Loess Plateau, China. Catena, 85, 58–66.
-
(2011)
Catena
, vol.85
, pp. 58-66
-
-
Wang, Y.1
Fu, B.2
Lü, Y.3
Chen, L.4
-
55
-
-
63849207489
-
Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils
-
Ward NL, Challacombe JF, Janssen PH et al. (2009) Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Applied and Environmental Microbiology, 75, 2046–2056.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 2046-2056
-
-
Ward, N.L.1
Challacombe, J.F.2
Janssen, P.H.3
-
57
-
-
84905197838
-
Next generation restoration genetics: applications and opportunities
-
Williams AV, Nevill PG, Krauss SL (2014) Next generation restoration genetics: applications and opportunities. Trends in Plant Science, 19, 529–537.
-
(2014)
Trends in Plant Science
, vol.19
, pp. 529-537
-
-
Williams, A.V.1
Nevill, P.G.2
Krauss, S.L.3
-
58
-
-
84883456353
-
Evaluating ecological restoration success: a review of the literature
-
Wortley L, Hero JM, Howes M (2013) Evaluating ecological restoration success: a review of the literature. Restoration Ecology, 21, 537–543.
-
(2013)
Restoration Ecology
, vol.21
, pp. 537-543
-
-
Wortley, L.1
Hero, J.M.2
Howes, M.3
-
59
-
-
0345016271
-
Plant diversity, soil microbial communities, and ecosystem function: are there any links?
-
Zak DR, Holmes WE, White DC, Peacock AD, Tilman D (2003) Plant diversity, soil microbial communities, and ecosystem function: are there any links? Ecology, 84, 2042–2050.
-
(2003)
Ecology
, vol.84
, pp. 2042-2050
-
-
Zak, D.R.1
Holmes, W.E.2
White, D.C.3
Peacock, A.D.4
Tilman, D.5
|