-
1
-
-
77950649410
-
The global methane cycle: Recent advances in understanding the microbial processes involved
-
Conrad, R. The global methane cycle: Recent advances in understanding the microbial processes involved. Environ. Microbiol. Rep. 2009, 1, 285-292.
-
(2009)
Environ. Microbiol. Rep
, vol.1
, pp. 285-292
-
-
Conrad, R.1
-
2
-
-
0033827797
-
Renewable methane from anaerobic digestion of biomass
-
Chynoweth, D.P.; Owens, J.M.; Legrand, R. Renewable methane from anaerobic digestion of biomass. Renew. Energ. 2001, 22, 1-8.
-
(2001)
Renew. Energ
, vol.22
, pp. 1-8
-
-
Chynoweth, D.P.1
Owens, J.M.2
Legrand, R.3
-
3
-
-
0030871461
-
Energetics of syntrophic cooperation in methanogenic degradation
-
Schink, B. Energetics of syntrophic cooperation in methanogenic degradation. Microbiol. Mol. Biol. Rev. 1997, 61, 262-280.
-
(1997)
Microbiol. Mol. Biol. Rev
, vol.61
, pp. 262-280
-
-
Schink, B.1
-
4
-
-
84870953080
-
Metabolic sequences of anaerobic fermentation on glucose-based feeding substrates based on correlation analyses of microbial and metabolite profiling
-
Date, Y.; Iikura, T.; Yamazawa, A.; Moriya, S.; Kikuchi, J. Metabolic sequences of anaerobic fermentation on glucose-based feeding substrates based on correlation analyses of microbial and metabolite profiling. J. Proteome Res. 2012, 11, 5602-5610.
-
(2012)
J. Proteome Res
, vol.11
, pp. 5602-5610
-
-
Date, Y.1
Iikura, T.2
Yamazawa, A.3
Moriya, S.4
Kikuchi, J.5
-
5
-
-
84883174068
-
Solid-, solution-, and gas-state NMR monitoring of 13C-cellulose degradation in an anaerobic microbial ecosystem
-
Yamazawa, A.; Iikura, T.; Shino, A.; Date, Y.; Kikuchi, J. Solid-, solution-, and gas-state NMR monitoring of 13C-cellulose degradation in an anaerobic microbial ecosystem. Molecules 2013, 18, 9021-9033.
-
(2013)
Molecules
, vol.18
, pp. 9021-9033
-
-
Yamazawa, A.1
Iikura, T.2
Shino, A.3
Date, Y.4
Kikuchi, J.5
-
6
-
-
0032587140
-
Use of 13C conformation-dependent chemical shifts to elucidate the local structure of a large protein with homologous domains in solution and solid state
-
Kikuchi, J.; Asakura, T. Use of 13C conformation-dependent chemical shifts to elucidate the local structure of a large protein with homologous domains in solution and solid state. J. Biochem. Biophys. Methods 1999, 38, 203-208.
-
(1999)
J. Biochem. Biophys. Methods
, vol.38
, pp. 203-208
-
-
Kikuchi, J.1
Asakura, T.2
-
7
-
-
79952308228
-
Chemical structures of corn stover and its residue after dilute acid prehydrolysis and enzymatic hydrolysis: Insight into factors limiting enzymatic hydrolysis
-
Mao, J.D.; Holtman, K.M.; Franqui-Villanueva, D. Chemical structures of corn stover and its residue after dilute acid prehydrolysis and enzymatic hydrolysis: Insight into factors limiting enzymatic hydrolysis. J. Agric. Food Chem. 2010, 58, 11680-11687.
-
(2010)
J. Agric. Food Chem
, vol.58
, pp. 11680-11687
-
-
Mao, J.D.1
Holtman, K.M.2
Franqui-Villanueva, D.3
-
8
-
-
2342575061
-
Accurate quantification of aromaticity and nonprotonated aromatic carbon fraction in natural organic matter by 13C solid-state nuclear magnetic resonance
-
Mao, J.D.; Schmidt-Rohr, K. Accurate quantification of aromaticity and nonprotonated aromatic carbon fraction in natural organic matter by 13C solid-state nuclear magnetic resonance. Environ. Sci. Technol. 2004, 38, 2680-2684.
-
(2004)
Environ. Sci. Technol
, vol.38
, pp. 2680-2684
-
-
Mao, J.D.1
Schmidt-Rohr, K.2
-
9
-
-
84865635059
-
Exploring the conformational space of amorphous cellulose using NMR chemical shifts
-
Mori, T.; Chikayama, E.; Tsuboi, Y.; Ishida, N.; Shisa, N.; Noritake, Y.; Moriya, S.; Kikuchi, J. Exploring the conformational space of amorphous cellulose using NMR chemical shifts. Carbohydr. Polym. 2012, 90, 1197-1203.
-
(2012)
Carbohydr. Polym
, vol.90
, pp. 1197-1203
-
-
Mori, T.1
Chikayama, E.2
Tsuboi, Y.3
Ishida, N.4
Shisa, N.5
Noritake, Y.6
Moriya, S.7
Kikuchi, J.8
-
10
-
-
84879210528
-
Differences in cellulosic supramolecular structure of compositionally similar rice straw affect biomass metabolism by paddy soil microbiota
-
Ogura, T.; Date, Y.; Kikuchi, J. Differences in cellulosic supramolecular structure of compositionally similar rice straw affect biomass metabolism by paddy soil microbiota. PLoS One 2013, 8, e66919.
-
(2013)
PLoS One
, vol.8
-
-
Ogura, T.1
Date, Y.2
Kikuchi, J.3
-
11
-
-
84861145991
-
Solubilization mechanism and characterization of the structural change of bacterial cellulose in regenerated states through ionic liquid treatment
-
Okushita, K.; Chikayama, E.; Kikuchi, J. Solubilization mechanism and characterization of the structural change of bacterial cellulose in regenerated states through ionic liquid treatment. Biomacromolecules 2012, 13, 1323-1330.
-
(2012)
Biomacromolecules
, vol.13
, pp. 1323-1330
-
-
Okushita, K.1
Chikayama, E.2
Kikuchi, J.3
-
12
-
-
84864715275
-
Statistical approach for solid-state NMR Spectra of Cellulose Derived From a Series of Variable Parameters
-
Okushita, K.; Komatsu, T.; Chikayama, E.; Kikuchi, J. Statistical approach for solid-state NMR spectra of cellulose derived from a series of variable parameters. Polym. J. 2012, 44, 895-900.
-
(2012)
Polym. J
, vol.44
, pp. 895-900
-
-
Okushita, K.1
Komatsu, T.2
Chikayama, E.3
Kikuchi, J.4
-
13
-
-
84880553589
-
Selective signal detection in solid-state NMR using rotor-synchronized dipolar dephasing for the analysis of hemicellulose in lignocellulosic biomass
-
Komatsu, T.; Kikuchi, J. Selective signal detection in solid-state NMR using rotor-synchronized dipolar dephasing for the analysis of hemicellulose in lignocellulosic biomass. J. Phys. Chem. Lett. 2013, 4, 2279-2283.
-
(2013)
J. Phys. Chem. Lett
, vol.4
, pp. 2279-2283
-
-
Komatsu, T.1
Kikuchi, J.2
-
14
-
-
33845557617
-
Observations by high-resolution C-13 nuclear magnetic-resonance of cellulose-I related to morphology and crystal-structure
-
Earl, W.L.; Vanderhart, D.L. Observations by high-resolution C-13 nuclear magnetic-resonance of cellulose-I related to morphology and crystal-structure. Macromolecules 1981, 14, 570-574.
-
(1981)
Macromolecules
, vol.14
, pp. 570-574
-
-
Earl, W.L.1
Vanderhart, D.L.2
-
15
-
-
33845471928
-
Studies of microstructure in native celluloses using solid-state carbon-13 NMR
-
Vanderhart, D.L.; Atalla, R.H. Studies of microstructure in native celluloses using solid-state carbon-13 NMR. Macromolecules 1984, 17, 1465-1472.
-
(1984)
Macromolecules
, vol.17
, pp. 1465-1472
-
-
Vanderhart, D.L.1
Atalla, R.H.2
-
16
-
-
84860645025
-
Concentration of metabolites from low-density planktonic communities for environmental metabolomics using nuclear magnetic resonance spectroscopy
-
Everroad, R.C.; Yoshida, S.; Tsuboi, Y.; Date, Y.; Kikuchi, J.; Moriya, S. Concentration of metabolites from low-density planktonic communities for environmental metabolomics using nuclear magnetic resonance spectroscopy. J. Vis. Exp. 2012, 62, e3163.
-
(2012)
J. Vis. Exp
, vol.62
-
-
Everroad, R.C.1
Yoshida, S.2
Tsuboi, Y.3
Date, Y.4
Kikuchi, J.5
Moriya, S.6
-
17
-
-
77954834827
-
Evaluation and characterization of bacterial metabolic dynamics with a novel profiling technique, real-time metabolotyping
-
Fukuda, S.; Nakanishi, Y.; Chikayama, E.; Ohno, H.; Hino, T.; Kikuchi, J. Evaluation and characterization of bacterial metabolic dynamics with a novel profiling technique, real-time metabolotyping. PLoS One 2009, 4, e4893.
-
(2009)
PLoS One
, vol.4
-
-
Fukuda, S.1
Nakanishi, Y.2
Chikayama, E.3
Ohno, H.4
Hino, T.5
Kikuchi, J.6
-
18
-
-
79251584066
-
Bifidobacteria can protect host from enteropathgenic infection through production acetate
-
Fukuda, S.; Toh, H.; Hase, K.; Oshima, K.; Nakanishi, Y.; Yoshimura, K.; Tobe, T.; Clarke, J.M.; Topping, D.L.; Suzuki, T.; et al. Bifidobacteria can protect host from enteropathgenic infection through production acetate. Nature 2011, 469, 543-547.
-
(2011)
Nature
, vol.469
, pp. 543-547
-
-
Fukuda, S.1
Toh, H.2
Hase, K.3
Oshima, K.4
Nakanishi, Y.5
Yoshimura, K.6
Tobe, T.7
Clarke, J.M.8
Topping, D.L.9
Suzuki, T.10
-
19
-
-
79955400483
-
Dynamic omics approach identifies nutrition-mediated microbial interactions
-
Nakanishi, Y.; Fukuda, S.; Chikayama, E.; Kimura, Y.; Ohno, H.; Kikuchi, J. Dynamic omics approach identifies nutrition-mediated microbial interactions. J. Proteome Res. 2010, 10, 824-836.
-
(2010)
J. Proteome Res
, vol.10
, pp. 824-836
-
-
Nakanishi, Y.1
Fukuda, S.2
Chikayama, E.3
Kimura, Y.4
Ohno, H.5
Kikuchi, J.6
-
20
-
-
77953122023
-
New monitoring approach for metabolic dynamics in microbial ecosystems using stable-isotope-labeling technologies
-
Date, Y.; Nakanishi, Y.; Fukuda, S.; Kato, T.; Tsuneda, S.; Ohno, H.; Kikuchi, J. New monitoring approach for metabolic dynamics in microbial ecosystems using stable-isotope-labeling technologies. J. Biosci. Bioeng. 2010, 110, 87-93.
-
(2010)
J. Biosci. Bioeng
, vol.110
, pp. 87-93
-
-
Date, Y.1
Nakanishi, Y.2
Fukuda, S.3
Kato, T.4
Tsuneda, S.5
Ohno, H.6
Kikuchi, J.7
-
21
-
-
35748959318
-
What's in the mix: Phylogenetic classification of metagenome sequence samples
-
McHardy, A.C.; Rigoutsos, I. What's in the mix: Phylogenetic classification of metagenome sequence samples. Curr. Opin. Microbiol. 2007, 10, 499-503.
-
(2007)
Curr. Opin. Microbiol
, vol.10
, pp. 499-503
-
-
McHardy, A.C.1
Rigoutsos, I.2
-
22
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
Gill, S.R.; Pop, M.; Deboy, R.T.; Eckburg, P.B.; Turnbaugh, P.J.; Samuel, B.S.; Gordon, J.I.; Relman, D.A.; Fraser-Liggett, C.M.; Nelson, K.E. Metagenomic analysis of the human distal gut microbiome. Science 2006, 312, 1355-1359.
-
(2006)
Science
, vol.312
, pp. 1355-1359
-
-
Gill, S.R.1
Pop, M.2
Deboy, R.T.3
Eckburg, P.B.4
Turnbaugh, P.J.5
Samuel, B.S.6
Gordon, J.I.7
Relman, D.A.8
Fraser-Liggett, C.M.9
Nelson, K.E.10
-
23
-
-
14944356813
-
Cellulase clostridia, and ethanol
-
Demain, A.L.; Newcomb, M.; Wu, J.H. Cellulase, clostridia, and ethanol. Microbiol. Mol. Biol. Rev. 2005, 69, 124-154.
-
(2005)
Microbiol. Mol. Biol. Rev
, vol.69
, pp. 124-154
-
-
Demain, A.L.1
Newcomb, M.2
Wu, J.H.3
-
24
-
-
0026055308
-
A classification of glycosyl hydrolases based on amino acid sequence similarities
-
Henrissat, B. A classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem. J. 1991, 280, 309-316.
-
(1991)
Biochem. J
, vol.280
, pp. 309-316
-
-
Henrissat, B.1
-
25
-
-
4744368323
-
Carbohydrate-binding modules: Fine-tuning polysaccharide recognition
-
Boraston, A.B.; Bolam, D.N.; Gilbert, H.J.; Davies, G.J. Carbohydrate-binding modules: Fine-tuning polysaccharide recognition. Biochem. J. 2004, 382, 769-781.
-
(2004)
Biochem. J
, vol.382
, pp. 769-781
-
-
Boraston, A.B.1
Bolam, D.N.2
Gilbert, H.J.3
Davies, G.J.4
-
26
-
-
85016490895
-
-
E-class, ECOMICS: Web tools for environmental and metabolic systems. Available online, (accessed on 20 December 2013)
-
E-class, ECOMICS: Web tools for environmental and metabolic systems. Available online: https://database.riken.jp/ecomics/eclass/ (accessed on 20 December 2013).
-
-
-
-
27
-
-
85016455440
-
-
ECOMICS, ECOMICS: Web tools for environmental and metabolic systems. Available online, (accessed on 20 December 2013)
-
ECOMICS, ECOMICS: Web tools for environmental and metabolic systems. Available online: https://database.riken.jp/ecomics/ (accessed on 20 December 2013).
-
-
-
-
28
-
-
84856471272
-
ECOMICS.A web-based toolkit for investigating the biomolecular web in ecosystems using a trans-omics approach
-
Ogata, Y.; Chikayama, E.; Morioka, Y.; Everroad, R.C.; Shino, A.; Matsushima, A.; Haruna, H.; Moriya, S.; Toyoda, T.; Kikuchi, J. ECOMICS: A web-based toolkit for investigating the biomolecular web in ecosystems using a trans-omics approach. PLoS One 2012, 7, e30263.
-
(2012)
PLoS One
, vol.7
-
-
Ogata, Y.1
Chikayama, E.2
Morioka, Y.3
Everroad, R.C.4
Shino, A.5
Matsushima, A.6
Haruna, H.7
Moriya, S.8
Toyoda, T.9
Kikuchi, J.10
-
29
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson, W.R.; Lipman, D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 1988, 85, 2444-2448.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
30
-
-
85016448692
-
-
FT2DB, ECOMICS: Web tools for environmental and metabolic systems. Available online, (accessed on 20 December 2013)
-
FT2DB, ECOMICS: Web tools for environmental and metabolic systems. Available online: https://database.riken.jp/ecomics/chika/index2.html (accessed on 20 December 2013).
-
-
-
-
31
-
-
77749302377
-
Profiling polar and semipolar plant metabolites throughout extraction processes using a combined solution-state and high-resolution magic angle spinning NMR approach
-
Sekiyama, Y.; Chikayama, E.; Kikuchi, J. Profiling polar and semipolar plant metabolites throughout extraction processes using a combined solution-state and high-resolution magic angle spinning NMR approach. Anal. Chem. 2010, 82, 1643-1652.
-
(2010)
Anal. Chem
, vol.82
, pp. 1643-1652
-
-
Sekiyama, Y.1
Chikayama, E.2
Kikuchi, J.3
-
35
-
-
85016499406
-
-
Protein Data Bank. Available online, (accessed on 20 December 2013)
-
Protein Data Bank. Available online: http://www.rcsb.org/pdb/home/home.do (accessed on 20 December 2013).
-
-
-
-
36
-
-
77953219138
-
The biochemistry and structural biology of plant cell wall deconstruction
-
Gilbert, H.J. The biochemistry and structural biology of plant cell wall deconstruction. Plant Physiol. 2010, 153, 444-455.
-
(2010)
Plant Physiol
, vol.153
, pp. 444-455
-
-
Gilbert, H.J.1
-
37
-
-
0030825785
-
Surface diffusion of cellulases and their isolated binding domains on cellulose
-
Jervis, E.J.; Haynes, C.A.; Kilburn, D.G. Surface diffusion of cellulases and their isolated binding domains on cellulose. J. Biol. Chem. 1997, 272, 24016-24023.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 24016-24023
-
-
Jervis, E.J.1
Haynes, C.A.2
Kilburn, D.G.3
-
38
-
-
0025605798
-
An arabinofuranosidase from Pseudomonas fluorescens subsp.cellulosa contain identical cellulose-binding domains and are encoded by adjacent genes
-
and
-
Kellett, L.E.; Poole, D.M.; Ferreira, L.M.; Durrant, A.J.; Hazlewood, G.P.; Gilbert, H.J. Xylanase B and an arabinofuranosidase from Pseudomonas fluorescens subsp. cellulosa contain identical cellulose-binding domains and are encoded by adjacent genes. Biochem. J. 1990, 272, 369-376.
-
(1990)
Biochem. J
, vol.272
, pp. 369-376
-
-
Kellett, L.E.1
Poole, D.M.2
Ferreira, L.M.3
Durrant, A.J.4
Hazlewood, G.P.5
Gilbert, H.J.6
Xylanase, B.7
-
39
-
-
33749394275
-
Understanding the biological rationale for the diversity of cellulose-directed carbohydrate-binding modules in prokaryotic enzymes
-
Blake, A.W.; McCartney, L.; Flint, J.E.; Bolam, D.N.; Boraston, A.B.; Gilbert, H.J.; Knox, J.P. Understanding the biological rationale for the diversity of cellulose-directed carbohydrate-binding modules in prokaryotic enzymes. J. Biol. Chem. 2006, 281, 29321-29329.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 29321-29329
-
-
Blake, A.W.1
McCartney, L.2
Flint, J.E.3
Bolam, D.N.4
Boraston, A.B.5
Gilbert, H.J.6
Knox, J.P.7
-
40
-
-
33745161547
-
Carbohydrate binding modules: Biochemical properties and novel applications
-
Shoseyov, O.; Shani, Z.; Levy, I. Carbohydrate binding modules: Biochemical properties and novel applications. Microbiol. Mol. Biol. Rev. 2006, 70, 283-295.
-
(2006)
Microbiol. Mol. Biol. Rev
, vol.70
, pp. 283-295
-
-
Shoseyov, O.1
Shani, Z.2
Levy, I.3
-
41
-
-
0037768452
-
Complete assignment of the CP/MAS C-13 NMR spectrum of cellulose IIII
-
Kono, H.; Erata, T.; Takai, M. Complete assignment of the CP/MAS C-13 NMR spectrum of cellulose IIII. Macromolecules 2003, 36, 3589-3592.
-
(2003)
Macromolecules
, vol.36
, pp. 3589-3592
-
-
Kono, H.1
Erata, T.2
Takai, M.3
-
42
-
-
0041806802
-
Determination of the through-bond carbon-carbon and carbon-proton connectivities of the native celluloses in the solid state
-
Kono, H.; Erata, T.; Takai, M. Determination of the through-bond carbon-carbon and carbon-proton connectivities of the native celluloses in the solid state. Macromolecules 2003, 36, 5131-5138.
-
(2003)
Macromolecules
, vol.36
, pp. 5131-5138
-
-
Kono, H.1
Erata, T.2
Takai, M.3
-
43
-
-
0033201418
-
CP/MAS C-13-NMR spectroscopy applied to structure and interaction studies on cellulose I
-
Larsson, P.T.; Hult, E.L.; Wickholm, K.; Pettersson, E.; Iversen, T. CP/MAS C-13-NMR spectroscopy applied to structure and interaction studies on cellulose I. Solid State Nuclear Magn. Reson. 1999, 15, 31-40.
-
(1999)
Solid State Nuclear Magn. Reson
, vol.15
, pp. 31-40
-
-
Larsson, P.T.1
Hult, E.L.2
Wickholm, K.3
Pettersson, E.4
Iversen, T.5
-
44
-
-
0028858575
-
Determination of the cellulose I alpha allomorph content in a tunicate cellulose by CP/MAS C-13-NMR spectroscopy
-
Larsson, P.T.; Westermark, U.; Iversen, T. Determination of the cellulose I alpha allomorph content in a tunicate cellulose by CP/MAS C-13-NMR spectroscopy. Carbohydr. Res. 1995, 278, 339-343.
-
(1995)
Carbohydr. Res
, vol.278
, pp. 339-343
-
-
Larsson, P.T.1
Westermark, U.2
Iversen, T.3
-
45
-
-
0030860744
-
CP/MAS C-13 NMR investigation of molecular ordering in celluloses
-
Larsson, P.T.; Wickholm, K.; Iversen, T. A CP/MAS C-13 NMR investigation of molecular ordering in celluloses. Carbohydr. Res. 1997, 302, 19-25.
-
(1997)
Carbohydr. Res
, vol.302
, pp. 19-25
-
-
Larsson, P.T.1
Wickholm, K.2
Iversen, T.A.3
-
46
-
-
0029400480
-
Nmrpipe-A multidimensional spectral processing system based on unix pipes
-
Delaglio, F.; Grzesiek, S.; Vuister, G.W.; Zhu, G.; Pfeifer, J.; Bax, A. Nmrpipe-A multidimensional spectral processing system based on unix pipes. J. Biomol. NMR 1995, 6, 277-293.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
47
-
-
84863264749
-
Cellulose microfibril crystallinity is reduced by mutating C-terminal transmembrane region residues CESA1(A903V) and CESA3(T942I) of cellulose synthase
-
Harris, D.M.; Corbin, K.; Wang, T.; Gutierrez, R.; Bertolo, A.L.; Petti, C.; Smilgies, D.M.; Estevez, J.M.; Bonetta, D.; Urbanowicz, B.R.; et al. Cellulose microfibril crystallinity is reduced by mutating C-terminal transmembrane region residues CESA1(A903V) and CESA3(T942I) of cellulose synthase. Proc. Natl. Acad. Sci. USA 2012, 109, 4098-4103.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 4098-4103
-
-
Harris, D.M.1
Corbin, K.2
Wang, T.3
Gutierrez, R.4
Bertolo, A.L.5
Petti, C.6
Smilgies, D.M.7
Estevez, J.M.8
Bonetta, D.9
Urbanowicz, B.R.10
-
48
-
-
84864643090
-
Chemical profiling of complex biochemical mixtures from various seaweeds
-
Date, Y.; Sakata, K.; Kikuchi, J. Chemical profiling of complex biochemical mixtures from various seaweeds. Polymer J. 2012, 44, 888-894.
-
(2012)
Polymer J
, vol.44
, pp. 888-894
-
-
Date, Y.1
Sakata, K.2
Kikuchi, J.3
|