메뉴 건너뛰기




Volumn 45, Issue D1, 2017, Pages D289-D295

CATH: An expanded resource to predict protein function through structure and sequence

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; AUTOMATION; CATH GENE3D DATABASE; FACTUAL DATABASE; INFORMATION PROCESSING; INTERNET; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN STRUCTURE; PUBLICATION; SEARCH ENGINE; SEQUENCE ALIGNMENT; SUPPORT VECTOR MACHINE; BIOLOGY; CHEMISTRY; METABOLISM; MOLECULAR MODEL; PROCEDURES; SOFTWARE; STRUCTURE ACTIVITY RELATION; WEB BROWSER;

EID: 85014645201     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkw1098     Document Type: Article
Times cited : (306)

References (25)
  • 3
    • 84946069451 scopus 로고    scopus 로고
    • UniProt: A hub for protein information
    • The UniProt Consortium (2014) UniProt: a hub for protein information. Nucleic Acids Res., 43, D204-D212.
    • (2014) Nucleic Acids Res. , vol.43 , pp. D204-D212
  • 7
    • 77950362058 scopus 로고    scopus 로고
    • GeMMA: Functional subfamily classification within superfamilies of predicted protein structural domains
    • Lee, D.A., Rentzsch, R. and Orengo, C. (2010) GeMMA: functional subfamily classification within superfamilies of predicted protein structural domains. Nucleic Acids Res., 38, 720-737.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 720-737
    • Lee, D.A.1    Rentzsch, R.2    Orengo, C.3
  • 8
    • 84947605491 scopus 로고    scopus 로고
    • Functional classification of CATH superfamilies: A domain-based approach for protein function annotation
    • Das, S., Lee, D., Sillitoe, I., Dawson, N.L., Lees, J.G. and Orengo, C.A. (2015) Functional classification of CATH superfamilies: a domain-based approach for protein function annotation. Bioinformatics, 31, 3460-3467.
    • (2015) Bioinformatics , vol.31 , pp. 3460-3467
    • Das, S.1    Lee, D.2    Sillitoe, I.3    Dawson, N.L.4    Lees, J.G.5    Orengo, C.A.6
  • 9
    • 84957449877 scopus 로고    scopus 로고
    • Large-scale analysis exploring evolution of catalytic machineries and mechanisms in enzyme superfamilies
    • Furnham, N., Dawson, N.L., Rahman, S.A., Thornton, J.M. and Orengo, C.A. (2016) Large-scale analysis exploring evolution of catalytic machineries and mechanisms in enzyme superfamilies. J. Mol. Biol., 428, 253-267.
    • (2016) J. Mol. Biol. , vol.428 , pp. 253-267
    • Furnham, N.1    Dawson, N.L.2    Rahman, S.A.3    Thornton, J.M.4    Orengo, C.A.5
  • 10
    • 84978909761 scopus 로고    scopus 로고
    • Novel computational protocols for functionally classifying and characterising serine beta-lactamases
    • Lee, D., Das, S., Dawson, N.L., Dobrijevic, D., Ward, J. and Orengo, C. (2016) Novel computational protocols for functionally classifying and characterising serine beta-lactamases. PLoS Comput. Biol., 12, e1004926.
    • (2016) PLoS Comput. Biol. , vol.12 , pp. e1004926
    • Lee, D.1    Das, S.2    Dawson, N.L.3    Dobrijevic, D.4    Ward, J.5    Orengo, C.6
  • 13
    • 0003410183 scopus 로고
    • Recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the Nomenclature and Classification of Enzymes Academic Press
    • Webb, E. (1992) Enzyme nomenclature 1992. Recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the Nomenclature and Classification of Enzymes Academic Press.
    • (1992) Enzyme Nomenclature 1992
    • Webb, E.1
  • 14
    • 84875619226 scopus 로고    scopus 로고
    • MAFFT multiple sequence alignment software version 7: Improvements in performance and usability
    • Katoh, K. and Standley, D.M. (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol., 30, 772-780.
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 772-780
    • Katoh, K.1    Standley, D.M.2
  • 15
    • 0036681416 scopus 로고    scopus 로고
    • Scoring residue conservation
    • Valdar, W.S.J. (2002) Scoring residue conservation. Proteins, 48, 227-241.
    • (2002) Proteins , vol.48 , pp. 227-241
    • Valdar, W.S.J.1
  • 16
    • 55749113550 scopus 로고    scopus 로고
    • Profile comparer: A program for scoring and aligning profile hidden Markov models
    • Madera, M. (2008) Profile comparer: a program for scoring and aligning profile hidden markov models. Bioinformatics, 24, 2630-2631.
    • (2008) Bioinformatics , vol.24 , pp. 2630-2631
    • Madera, M.1
  • 17
    • 84870431038 scopus 로고    scopus 로고
    • CD-HIT: Accelerated for clustering the next-generation sequencing data
    • Fu, L., Niu, B., Zhu, Z., Wu, S. and Li, W. (2012) CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics, 28, 3150-3152.
    • (2012) Bioinformatics , vol.28 , pp. 3150-3152
    • Fu, L.1    Niu, B.2    Zhu, Z.3    Wu, S.4    Li, W.5
  • 18
    • 0029948001 scopus 로고    scopus 로고
    • SSAP: Sequential structure alignment program for protein structure comparison
    • Orengo, C.A. and Taylor, W.R. (1996) SSAP: sequential structure alignment program for protein structure comparison. Methods Enzymol., 266, 617-35.
    • (1996) Methods Enzymol. , vol.266 , pp. 617-635
    • Orengo, C.A.1    Taylor, W.R.2
  • 20
    • 13444279981 scopus 로고    scopus 로고
    • Comprehensive evaluation of protein structure alignment methods: Scoring by geometric measures
    • Kolodny, R., Koehl, P. and Levitt, M. (2005) Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures. J. Mol. Biol., 346, 1173-1188.
    • (2005) J. Mol. Biol. , vol.346 , pp. 1173-1188
    • Kolodny, R.1    Koehl, P.2    Levitt, M.3
  • 21
    • 17644392830 scopus 로고    scopus 로고
    • TM-align: A protein structure alignment algorithm based on the TM-score
    • Zhang, Y. and Skolnick, J. (2005) TM-align: a protein structure alignment algorithm based on the TM-score. Nucleic Acids Res., 33, 2302-2309.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2302-2309
    • Zhang, Y.1    Skolnick, J.2
  • 24
    • 84927720583 scopus 로고    scopus 로고
    • 3Dmol.js: Molecular visualization with WebGL
    • Rego, N. and Koes, D. (2015) 3Dmol.js: molecular visualization with WebGL. Bioinformatics, 31, 1322-1324.
    • (2015) Bioinformatics , vol.31 , pp. 1322-1324
    • Rego, N.1    Koes, D.2
  • 25
    • 79952202448 scopus 로고    scopus 로고
    • Cytoscape: Software for visualization and analysis of biological networks
    • Humana Press, Totowa
    • Kohl, M., Wiese, S. and Warscheid, B. (2011) Cytoscape: software for visualization and analysis of biological networks. In: Data Mining in Proteomics: From Standardsto Applications. Humana Press, Totowa, pp. 291-303.
    • (2011) Data Mining in Proteomics: From Standardsto Applications , pp. 291-303
    • Kohl, M.1    Wiese, S.2    Warscheid, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.