-
1
-
-
84941039390
-
CATH: Comprehensive structural and functional annotations for genome sequences
-
Sillitoe, I., Lewis, T.E., Cuff, A., Das, S., Ashford, P., Dawson, N.L., Furnham, N., Laskowski, R.A., Lee, D., Lees, J.G. et al. (2015) CATH: comprehensive structural and functional annotations for genome sequences. Nucleic Acids Res., 43, D376-D381.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D376-D381
-
-
Sillitoe, I.1
Lewis, T.E.2
Cuff, A.3
Das, S.4
Ashford, P.5
Dawson, N.L.6
Furnham, N.7
Laskowski, R.A.8
Lee, D.9
Lees, J.G.10
-
2
-
-
0028593509
-
Protein superfamilles and domain superfolds
-
Orengo, C.A., Jones, D.T. and Thornton, J.M. (1994) Protein superfamilles and domain superfolds. Nature, 372, 631-634.
-
(1994)
Nature
, vol.372
, pp. 631-634
-
-
Orengo, C.A.1
Jones, D.T.2
Thornton, J.M.3
-
3
-
-
84876298530
-
Protein function prediction using domain families
-
Rentzsch, R. and Orengo, C.A (2013) Protein function prediction using domain families. BMC Bioinformatics, 14(Suppl. 3), S5.
-
(2013)
BMC Bioinformatics
, vol.14
, pp. S5
-
-
Rentzsch, R.1
Orengo, C.A.2
-
4
-
-
84874663959
-
A large-scale evaluation of computational protein function prediction
-
Radivojac, P., Clark, W.T., Oron, T.R., Schnoes, A.M., Wittkop, T., Sokolov, A., Graim, K., Funk, C., Verspoor, K., Ben-Hur, A. et al. (2013) A large-scale evaluation of computational protein function prediction. Nat. Methods, 10, 221-227.
-
(2013)
Nat. Methods
, vol.10
, pp. 221-227
-
-
Radivojac, P.1
Clark, W.T.2
Oron, T.R.3
Schnoes, A.M.4
Wittkop, T.5
Sokolov, A.6
Graim, K.7
Funk, C.8
Verspoor, K.9
Ben-Hur, A.10
-
5
-
-
84891783174
-
Activities at the universal protein resource (UniProt)
-
The UniProt Consortium (2014) Activities at the Universal Protein Resource (UniProt). Nucleic Acids Res., 42, D191-D198.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D191-D198
-
-
-
6
-
-
84891768365
-
Ensembl 2014
-
Flicek, P., Amode, M.R., Barrell, D., Beal, K., Billis, K., Brent, S., Carvalho-Silva, D., Clapham, P., Coates, G., Fitzgerald, S. et al. (2014) Ensembl 2014. Nucleic Acids Res., 42, D749-D745.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D749-D1745
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Billis, K.5
Brent, S.6
Carvalho-Silva, D.7
Clapham, P.8
Coates, G.9
Fitzgerald, S.10
-
7
-
-
84891822189
-
Ensembl genomes 2013: Scaling up access to genome-wide data
-
Kersey, P.J., Allen, J.E., Christensen, M., Davis, P., Falin, L.J., Grabmueller, C., Hughes, D.S.T., Humphrey, J., Kerhornou, A., Khobova, J. et al. (2014) Ensembl Genomes 2013: scaling up access to genome-wide data. Nucleic Acids Res., 42, D546-D552.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D546-D552
-
-
Kersey, P.J.1
Allen, J.E.2
Christensen, M.3
Davis, P.4
Falin, L.J.5
Grabmueller, C.6
Hughes, D.S.T.7
Humphrey, J.8
Kerhornou, A.9
Khobova, J.10
-
8
-
-
84947605491
-
Functional classification of CATH superfamilies: A domain-based approach for protein function annotation
-
Das, S., Lee, D., Sillitoe, I., Dawson, N.L., Lees, J.G. and Orengo, C.A. (2015) Functional classification of CATH superfamilies: a domain-based approach for protein function annotation. Bioinformatics, 31, 3460-3467.
-
(2015)
Bioinformatics
, vol.31
, pp. 3460-3467
-
-
Das, S.1
Lee, D.2
Sillitoe, I.3
Dawson, N.L.4
Lees, J.G.5
Orengo, C.A.6
-
9
-
-
84891757330
-
Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis
-
Lees, J.G., Lee, D., Studer, R.A., Dawson, N.L., Sillitoe, I., Das, S., Yeats, C., Dessailly, B.H., Rentzsch, R. and Orengo, C.A. (2014) Gene3D: multi-domain annotations for protein sequence and comparative genome analysis. Nucleic Acids Res., 42, D240-D245.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D240-D245
-
-
Lees, J.G.1
Lee, D.2
Studer, R.A.3
Dawson, N.L.4
Sillitoe, I.5
Das, S.6
Yeats, C.7
Dessailly, B.H.8
Rentzsch, R.9
Orengo, C.A.10
-
10
-
-
77950362058
-
GeMMA: Functional subfamily classification within superfamilies of predicted protein structural domains
-
Lee, D.A., Rentzsch, R. and Oreng, C. (2009) GeMMA: functional subfamily classification within superfamilies of predicted protein structural domains. Nucleic Acids Res., 38, 720-737.
-
(2009)
Nucleic Acids Res.
, vol.38
, pp. 720-737
-
-
Lee, D.A.1
Rentzsch, R.2
Oreng, C.3
-
11
-
-
77951961719
-
How significant is a protein structure similarity with TM-score = 0.5?
-
Xu, J. and Zhang, Y. (2010) How significant is a protein structure similarity with TM-score = 0.5? Bioinformatics, 26, 889-895.
-
(2010)
Bioinformatics
, vol.26
, pp. 889-895
-
-
Xu, J.1
Zhang, Y.2
-
12
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
13
-
-
16344373015
-
Protein homology detection by HMM-HMM comparison
-
Söding, J. (2005) Protein homology detection by HMM-HMM comparison. Bioinformatics, 21, 951-960.
-
(2005)
Bioinformatics
, vol.21
, pp. 951-960
-
-
Söding, J.1
-
14
-
-
84859204939
-
The IntAct molecular interaction database in 2012
-
Kerrien, S., Aranda, B., Breuza, L., Bridge, A., Broackes-Carter, F., Chen, C., Duesbury, M., Dumousseau, M., Feuermann, M., Hinz, U. et al. (2012) The IntAct molecular interaction database in 2012. Nucleic Acids Res., 40, D841-D846.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D841-D846
-
-
Kerrien, S.1
Aranda, B.2
Breuza, L.3
Bridge, A.4
Broackes-Carter, F.5
Chen, C.6
Duesbury, M.7
Dumousseau, M.8
Feuermann, M.9
Hinz, U.10
-
15
-
-
84868010133
-
Domain landscapes of somatic mutations in cancer
-
Nehrt, N.L., Peterson, T.A., Park, D. and Kann, M.G. (2012) Domain landscapes of somatic mutations in cancer. BMC Genomics, 13, S9.
-
(2012)
BMC Genomics
, vol.13
, pp. S9
-
-
Nehrt, N.L.1
Peterson, T.A.2
Park, D.3
Kann, M.G.4
-
17
-
-
14844342815
-
The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins
-
Dosztányi, Z., Csizmók, V., Tompa, P. and Simon, I. (2005) The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins. J. Mol. Biol., 347, 827-839.
-
(2005)
J. Mol. Biol.
, vol.347
, pp. 827-839
-
-
Dosztányi, Z.1
Csizmók, V.2
Tompa, P.3
Simon, I.4
-
18
-
-
84887290206
-
Comprehensive repertoire of foldable regions within whole genomes
-
Faure, G. and Callebaut, I. (2013) Comprehensive repertoire of foldable regions within whole genomes. PLoS Comput. Biol., 9, e1003280.
-
(2013)
PLoS Comput. Biol.
, vol.9
-
-
Faure, G.1
Callebaut, I.2
-
19
-
-
78651290702
-
ModBase, a database of annotated comparative protein structure models, and associated resources
-
Pieper, U., Webb, B.M., Barkan, D.T., Schneidman-Duhovny, D., Schlessinger, A., Braberg, H., Yang, Z., Meng, E.C., Pettersen, E.F., Huang, C.C. et al. (2011) ModBase, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res., 39, D465-D474.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D465-D474
-
-
Pieper, U.1
Webb, B.M.2
Barkan, D.T.3
Schneidman-Duhovny, D.4
Schlessinger, A.5
Braberg, H.6
Yang, Z.7
Meng, E.C.8
Pettersen, E.F.9
Huang, C.C.10
-
20
-
-
84929666410
-
Expanding the biologist's toolkit with CRISPR-Cas9
-
Sternberg, S.H. and Doudna, J.A. (2015) Expanding the Biologist's Toolkit with CRISPR-Cas9. Mol. Cell, 58, 568-574.
-
(2015)
Mol. Cell
, vol.58
, pp. 568-574
-
-
Sternberg, S.H.1
Doudna, J.A.2
-
22
-
-
84941051170
-
STRING v10: Protein-protein interaction networks, integrated over the tree of life
-
Szklarczyk, D., Franceschini, A., Wyder, S., Forslund, K., Heller, D., Huerta-Cepas, J., Simonovic, M., Roth, A., Santos, A., Tsafou, K.P. et al. (2015) STRING v10: protein-protein interaction networks, integrated over the tree of life. Nucleic Acids Res., 43, D447-D452.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D447-D452
-
-
Szklarczyk, D.1
Franceschini, A.2
Wyder, S.3
Forslund, K.4
Heller, D.5
Huerta-Cepas, J.6
Simonovic, M.7
Roth, A.8
Santos, A.9
Tsafou, K.P.10
-
23
-
-
84876252208
-
BioJS: An open source JavaScript framework for biological data visualization
-
Gómez, J., García, L.J., Salazar, G.A., Villaveces, J., Gore, S., García, A., Martín, M.J., Launay, G., Alcántara, R., Del-Toro, N. et al. (2013) BioJS: an open source JavaScript framework for biological data visualization. Bioinformatics, 29, 1103-1104.
-
(2013)
Bioinformatics
, vol.29
, pp. 1103-1104
-
-
Gómez, J.1
García, L.J.2
Salazar, G.A.3
Villaveces, J.4
Gore, S.5
García, A.6
Martín, M.J.7
Launay, G.8
Alcántara, R.9
Del-Toro, N.10
|