-
1
-
-
39449103059
-
The epidemic of antibiotic-resistant infections: A call to action for the medical community from the Infectious Diseases Society of America
-
Spellberg B, Guidos R, Gilbert D et al. The epidemic of antibiotic-resistant infections: a call to action for the medical community from the Infectious Diseases Society of America. Clin Infect Dis 2008; 46: 155-64.
-
(2008)
Clin Infect Dis
, vol.46
, pp. 155-164
-
-
Spellberg, B.1
Guidos, R.2
Gilbert, D.3
-
2
-
-
84900345067
-
The perpetual challenge of antimicrobial resistance
-
Fauci AS, Marston LD. The perpetual challenge of antimicrobial resistance. JAMA 2014; 311: 1853-4.
-
(2014)
JAMA
, vol.311
, pp. 1853-1854
-
-
Fauci, A.S.1
Marston, L.D.2
-
3
-
-
84965045968
-
Resurrecting the intestinal microbiota to combat antibioticresistant pathogens
-
Pamer EG. Resurrecting the intestinal microbiota to combat antibioticresistant pathogens. Science 2016; 352: 535-8.
-
(2016)
Science
, vol.352
, pp. 535-538
-
-
Pamer, E.G.1
-
4
-
-
84856969539
-
Fecal microbiota transplantation and emerging applications
-
Borody TJ, Khoruts A. Fecal microbiota transplantation and emerging applications. Nat Rev Gastroenterol Hepatol 2012; 9: 88-96.
-
(2012)
Nat Rev Gastroenterol Hepatol
, vol.9
, pp. 88-96
-
-
Borody, T.J.1
Khoruts, A.2
-
5
-
-
84928885767
-
Fecal microbiota transplantation for Clostridium diffi cile infection: A systematic review
-
Drekonja D, Reich J, Gezahegn S et al. Fecal microbiota transplantation for Clostridium diffi cile infection: a systematic review. Ann Intern Med 2015; 162: 630-8.
-
(2015)
Ann Intern Med
, vol.162
, pp. 630-638
-
-
Drekonja, D.1
Reich, J.2
Gezahegn, S.3
-
6
-
-
84873019302
-
Duodenal infusion of donor feces for recurrent Clostridium diffi cile
-
van Nood E, Vrieze A, Nieuwdorp M et al. Duodenal infusion of donor feces for recurrent Clostridium diffi cile. N Engl J Med 2013; 368: 407-15.
-
(2013)
N Engl J Med
, vol.368
, pp. 407-415
-
-
Van Nood, E.1
Vrieze, A.2
Nieuwdorp, M.3
-
7
-
-
84862309942
-
Standardized frozen preparation for transplantation of fecal microbiota for recurrent Clostridium diffi cile infection
-
Hamilton MJ, Weingarden AR, Sadowsky MJ et al. Standardized frozen preparation for transplantation of fecal microbiota for recurrent Clostridium diffi cile infection. Am J Gastroenterol 2012; 107: 761-7.
-
(2012)
Am J Gastroenterol
, vol.107
, pp. 761-767
-
-
Hamilton, M.J.1
Weingarden, A.R.2
Sadowsky, M.J.3
-
8
-
-
84964765013
-
Inflammatory bowel disease affects the outcome of fecal microbiota transplantation for recurrent Clostridium diffi cile infection
-
Khoruts A, Rank KM, Newman KM et al. Inflammatory bowel disease affects the outcome of fecal microbiota transplantation for recurrent Clostridium diffi cile infection. Clin Gastroenterol Hepatol 2016; 14: 1433-8.
-
(2016)
Clin Gastroenterol Hepatol
, vol.14
, pp. 1433-1438
-
-
Khoruts, A.1
Rank, K.M.2
Newman, K.M.3
-
9
-
-
84870178314
-
Patient attitudes toward the use of fecal microbiota transplantation in the treatment of recurrent Clostridium diffi cile infection
-
Zipursky JS, Sidorsky TI, Freedman CA et al. Patient attitudes toward the use of fecal microbiota transplantation in the treatment of recurrent Clostridium diffi cile infection. Clin Infect Dis 2012; 55: 1652-8.
-
(2012)
Clin Infect Dis
, vol.55
, pp. 1652-1658
-
-
Zipursky, J.S.1
Sidorsky, T.I.2
Freedman, C.A.3
-
10
-
-
84908681868
-
Oral, capsulized, frozen fecal microbiota transplantation for relapsing Clostridium diffi cile infection
-
Youngster I, Russell GH, Pindar C et al. Oral, capsulized, frozen fecal microbiota transplantation for relapsing Clostridium diffi cile infection. JAMA 2014; 312: 1772-8.
-
(2014)
JAMA
, vol.312
, pp. 1772-1778
-
-
Youngster, I.1
Russell, G.H.2
Pindar, C.3
-
11
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere"
-
Sogin ML, Morrison HG, Huber JA et al. Microbial diversity in the deep sea and the underexplored "rare biosphere". Proc Natl Acad Sci USA 2006; 103: 12115-20.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
-
12
-
-
78650453707
-
Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions
-
Claesson MJ, Wang Q, O'Sullivan O et al. Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions. Nucleic Acids Res 2010; 38: e200.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. e200
-
-
Claesson, M.J.1
Wang, Q.2
O'Sullivan, O.3
-
13
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported soft ware for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T et al. Introducing mothur: open-source, platform-independent, community-supported soft ware for describing and comparing microbial communities. Appl Environ Microbiol 2009; 75: 7537-41.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
-
14
-
-
84928902435
-
Evaluation of water sampling methodologies for amplicon-based characterization of bacterial community structure
-
Staley C, Gould TJ, Wang P et al. Evaluation of water sampling methodologies for amplicon-based characterization of bacterial community structure. J Microbiol Methods 2015; 114: 43-50.
-
(2015)
J Microbiol Methods
, vol.114
, pp. 43-50
-
-
Staley, C.1
Gould, T.J.2
Wang, P.3
-
15
-
-
84875098273
-
Comparison of sequencing utility programs
-
Aronesty E. Comparison of sequencing utility programs. Open Bioinforma J 2013; 7: 1-8.
-
(2013)
Open Bioinforma J
, vol.7
, pp. 1-8
-
-
Aronesty, E.1
-
16
-
-
37549027613
-
SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K et al. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 2007; 35: 7188-96.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
-
17
-
-
77955251092
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
-
Huse SM, Welch DM, Morrison HG et al. Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 2010; 12: 1889-98.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1889-1898
-
-
Huse, S.M.1
Welch, D.M.2
Morrison, H.G.3
-
18
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC et al. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 2011; 27: 2194-200.
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
-
19
-
-
84856563821
-
Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes
-
Gihring TM, Green SJ, Schadt CW. Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes. Environ Microbiol 2012; 14: 285-90.
-
(2012)
Environ Microbiol
, vol.14
, pp. 285-290
-
-
Gihring, T.M.1
Green, S.J.2
Schadt, C.W.3
-
20
-
-
58149200948
-
The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
-
Cole JR, Wang Q, Cardenas E et al. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 2009; 37: D141-5.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D141-D145
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
-
21
-
-
80052301430
-
Bayesian community-wide culture-independent microbial source tracking
-
Knights D, Kuczynski J, Charlson ES et al. Bayesian community-wide culture-independent microbial source tracking. Nat Methods 2011; 8: 761-3.
-
(2011)
Nat Methods
, vol.8
, pp. 761-763
-
-
Knights, D.1
Kuczynski, J.2
Charlson, E.S.3
-
22
-
-
0026681074
-
Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
-
Excoffi er L, Smouse PE, Quattro JM. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992; 131: 479-91.
-
(1992)
Genetics
, vol.131
, pp. 479-491
-
-
Excoffi Er, L.1
Smouse, P.E.2
Quattro, J.M.3
-
23
-
-
0027804103
-
Non-parametric multivariate analyses of changes in community structure
-
Clarke KR. Non-parametric multivariate analyses of changes in community structure. Aust. J. Ecol. 1993; 18: 117-43.
-
(1993)
Aust. J. Ecol.
, vol.18
, pp. 117-143
-
-
Clarke, K.R.1
-
24
-
-
0037672413
-
Protectants used in the cryopreservation of microorganisms
-
Hubalek Z. Protectants used in the cryopreservation of microorganisms. Cryobiology 2003; 46: 205-29.
-
(2003)
Cryobiology
, vol.46
, pp. 205-229
-
-
Hubalek, Z.1
-
25
-
-
84931355745
-
Dynamic changes in short-and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium diffi cile infection
-
Weingarden A, Gonzalez A, Vazquez-Baeza Y et al. Dynamic changes in short-and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium diffi cile infection. Microbiome 2015; 3: 10.
-
(2015)
Microbiome
, vol.3
, pp. 10
-
-
Weingarden, A.1
Gonzalez, A.2
Vazquez-Baeza, Y.3
-
26
-
-
84874737205
-
High-throughput DNA sequence analysis reveals stable engraft ment of gut microbiota following transplantation of previously frozen fecal bacteria
-
Hamilton MJ, Weingarden AR, Unno T et al. High-throughput DNA sequence analysis reveals stable engraft ment of gut microbiota following transplantation of previously frozen fecal bacteria. Gut Microbes 2013; 4: 125-35.
-
(2013)
Gut Microbes
, vol.4
, pp. 125-135
-
-
Hamilton, M.J.1
Weingarden, A.R.2
Unno, T.3
-
27
-
-
84894105226
-
Microbiota transplantation restores normal fecal bile acid composition in recurrent Clostridium diffi cile infection
-
Weingarden AR, Chen C, Bobr A et al. Microbiota transplantation restores normal fecal bile acid composition in recurrent Clostridium diffi cile infection. Am J Physiol Gastrointest Liver Physiol 2014; 306: G310-9.
-
(2014)
Am J Physiol Gastrointest Liver Physiol
, vol.306
, pp. G310-G319
-
-
Weingarden, A.R.1
Chen, C.2
Bobr, A.3
-
28
-
-
84924533173
-
Species and genus level resolution analysis of gut microbiota in Clostridium diffi cile patients following fecal microbiota transplantation
-
Shankar V, Hamilton MJ, Khoruts A et al. Species and genus level resolution analysis of gut microbiota in Clostridium diffi cile patients following fecal microbiota transplantation. Microbiome 2014; 2: 13.
-
(2014)
Microbiome
, vol.2
, pp. 13
-
-
Shankar, V.1
Hamilton, M.J.2
Khoruts, A.3
-
29
-
-
84868361276
-
Toward an understanding of changes in diversity associated with fecal microbiome transplantation based on 16S rRNA gene deep sequencing
-
Shahinas D, Silverman M, Sittler T et al. Toward an understanding of changes in diversity associated with fecal microbiome transplantation based on 16S rRNA gene deep sequencing. MBio 2012; 3: e00338-12.
-
(2012)
MBio
, vol.3
, pp. e00338-e00412
-
-
Shahinas, D.1
Silverman, M.2
Sittler, T.3
-
30
-
-
84903954202
-
Recovery of the gut microbiome following fecal microbiota transplantation
-
Seekatz AM, Aas J, Gessert CE et al. Recovery of the gut microbiome following fecal microbiota transplantation. MBio 2014; 5: e00893-14.
-
(2014)
MBio
, vol.5
, pp. e00893-e00914
-
-
Seekatz, A.M.1
Aas, J.2
Gessert, C.E.3
-
31
-
-
84875952150
-
Guidelines for diagnosis, treatment, and prevention of Clostridium diffi cile infections
-
quiz 499
-
Surawicz CM, Brandt LJ, Binion DG et al. Guidelines for diagnosis, treatment, and prevention of Clostridium diffi cile infections. Am J Gastroenterol 2013; 108: 478-98; quiz 499.
-
(2013)
Am J Gastroenterol
, vol.108
, pp. 478-498
-
-
Surawicz, C.M.1
Brandt, L.J.2
Binion, D.G.3
-
32
-
-
84954543513
-
Frozen vs. Fresh fecal microbiota transplantation and clinical resolution of diarrhea in patients with recurrent Clostridium diffi cile infection: A randomized clinical trial
-
Lee CH, Steiner T, Petrof EO et al. Frozen vs. fresh fecal microbiota transplantation and clinical resolution of diarrhea in patients with recurrent Clostridium diffi cile infection: a randomized clinical trial. JAMA 2016; 315: 142-9.
-
(2016)
JAMA
, vol.315
, pp. 142-149
-
-
Lee, C.H.1
Steiner, T.2
Petrof, E.O.3
-
33
-
-
84900418033
-
Fecal microbiota transplant for relapsing Clostridium diffi cile infection using a frozen inoculum from unrelated donors: A randomized, open-label, controlled pilot study
-
Youngster I, Sauk J, Pindar C et al. Fecal microbiota transplant for relapsing Clostridium diffi cile infection using a frozen inoculum from unrelated donors: a randomized, open-label, controlled pilot study. Clin Infect Dis 2014; 58: 1515-22.
-
(2014)
Clin Infect Dis
, vol.58
, pp. 1515-1522
-
-
Youngster, I.1
Sauk, J.2
Pindar, C.3
-
34
-
-
84986294197
-
Oral, frozen fecal microbiota transplant (FMT) capsules for recurrent Clostridium diffi cile infection
-
Youngster I, Mahabamunuge J, Systrom HK et al. Oral, frozen fecal microbiota transplant (FMT) capsules for recurrent Clostridium diffi cile infection. BMC Med 2016; 14: 134.
-
(2016)
BMC Med
, vol.14
, pp. 134
-
-
Youngster, I.1
Mahabamunuge, J.2
Systrom, H.K.3
-
35
-
-
84937214310
-
Effectiveness of fecal-derived microbiota transfer using orally administered capsules for recurrent Clostridium diffi cile infection
-
Hirsch BE, Saraiya N, Poeth K et al. Effectiveness of fecal-derived microbiota transfer using orally administered capsules for recurrent Clostridium diffi cile infection. BMC Infect Dis 2015; 15: 191.
-
(2015)
BMC Infect Dis
, vol.15
, pp. 191
-
-
Hirsch, B.E.1
Saraiya, N.2
Poeth, K.3
-
36
-
-
84960130524
-
Safety and durability of RBX2660 (microbiota suspension) for recurrent Clostridium diffi cile infection: Results of the PUNCH CD study
-
Orenstein R, Dubberke E, Hardi R et al. Safety and durability of RBX2660 (microbiota suspension) for recurrent Clostridium diffi cile infection: results of the PUNCH CD study. Clin Infect Dis 2016; 62: 596-602.
-
(2016)
Clin Infect Dis
, vol.62
, pp. 596-602
-
-
Orenstein, R.1
Dubberke, E.2
Hardi, R.3
-
37
-
-
84981250026
-
High risk of postinfectious irritable bowel syndrome in patients with Clostridium diffi cile infection
-
Wadhwa A, Al Nahhas MF, Dierkhising RA et al. High risk of postinfectious irritable bowel syndrome in patients with Clostridium diffi cile infection. Aliment Pharmacol Ther 2016; 44: 576-82.
-
(2016)
Aliment Pharmacol Ther
, vol.44
, pp. 576-582
-
-
Wadhwa, A.1
Al Nahhas, M.F.2
Dierkhising, R.A.3
-
38
-
-
84965172338
-
Environmental contamination in households of patients with recurrent Clostridium diffi cile Infection
-
Shaughnessy MK, Bobr A, Kuskowski MA et al. Environmental contamination in households of patients with recurrent Clostridium diffi cile Infection. Appl Environ Microbiol 2016; 82: 2686-92.
-
(2016)
Appl Environ Microbiol
, vol.82
, pp. 2686-2692
-
-
Shaughnessy, M.K.1
Bobr, A.2
Kuskowski, M.A.3
|