-
1
-
-
0029400480
-
Nmrpipe - A multidimensional spectral processing system based on Unix pipes
-
Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A. Nmrpipe - a multidimensional spectral processing system based on Unix pipes. J Biomol NMR. 1995;6(3):277-93. doi:10.1007/Bf00197809.
-
(1995)
J Biomol NMR
, vol.6
, Issue.3
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
2
-
-
33749861562
-
HiRes - A tool for comprehensive assessment and interpretation of metabolomic data
-
Zhao Q, Stoyanova R, Du SY, Sajda P, Brown TR. HiRes - a tool for comprehensive assessment and interpretation of metabolomic data. Bioinformatics. 2006;22(20):2562-4. doi:10.1093/bioinformatics/btl428.
-
(2006)
Bioinformatics
, vol.22
, Issue.20
, pp. 2562-2564
-
-
Zhao, Q.1
Stoyanova, R.2
Du, S.Y.3
Sajda, P.4
Brown, T.R.5
-
3
-
-
84876148784
-
HMDB 3.0-the human metabolome database in 2013
-
Wishart DS, Jewison T, Guo AC, Wilson M, Knox C, Liu Y, et al. HMDB 3.0-the human metabolome database in 2013. Nucleic Acids Res. 2013;41(Database issue):D801-7. doi:10.1093/nar/gks1065.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.Database issue
-
-
Wishart, D.S.1
Jewison, T.2
Guo, A.C.3
Wilson, M.4
Knox, C.5
Liu, Y.6
-
4
-
-
38949178155
-
Metabolite identification via the Madison metabolomics consortium database
-
Cui Q, Lewis IA, Hegeman AD, Anderson ME, Li J, Schulte CF, et al. Metabolite identification via the Madison metabolomics consortium database. Nat Biotechnol. 2008;26(2):162-4. doi:10.1038/nbt0208-162.
-
(2008)
Nat Biotechnol
, vol.26
, Issue.2
, pp. 162-164
-
-
Cui, Q.1
Lewis, I.A.2
Hegeman, A.D.3
Erson, M.E.4
Li, J.5
Schulte, C.F.6
-
5
-
-
84901829627
-
Bayesian deconvolution and quantification of metabolites in complex 1D NMR spectra using BATMAN
-
Hao J, Liebeke M, Astle W, De Iorio M, Bundy JG, Ebbels TMD. Bayesian deconvolution and quantification of metabolites in complex 1D NMR spectra using BATMAN. Nat Protoc. 2014;9(6):1416-27. doi:10.1038/nprot.2014.090.
-
(2014)
Nat Protoc
, vol.9
, Issue.6
, pp. 1416-1427
-
-
Hao, J.1
Liebeke, M.2
Astle, W.3
De Iorio, M.4
Bundy, J.G.5
Ebbels, T.M.D.6
-
6
-
-
84865144924
-
Package for the automated quantification of metabolites from nuclear magnetic resonance spectra using a Bayesian model
-
Hao J, Astle W, De Iorio M, Ebbels TMD. BATMAN-an R package for the automated quantification of metabolites from nuclear magnetic resonance spectra using a Bayesian model. Bioinformatics. 2012;28(15):2088-90. doi:10.1093/bioinformatics/bts308.
-
(2012)
Bioinformatics
, vol.28
, Issue.15
, pp. 2088-2090
-
-
Hao, J.1
Astle, W.2
De Iorio, M.3
Ebbels, T.4
Batman-An, R.5
-
7
-
-
84952866458
-
Accurate, fully-automated NMR spectral profiling for metabolomics (Vol 10, e0124219, 2015)
-
Ravanbakhsh S, Liu P, Bjorndahl TC, Mandal R, Grant JR, Wilson M, et al. Accurate, fully-automated NMR spectral profiling for metabolomics (vol 10, e0124219, 2015). Plos One. 2015;10(7). doi:10.1371/journal.pone.0132873.
-
(2015)
Plos One
, vol.10
, Issue.7
-
-
Ravanbakhsh, S.1
Liu, P.2
Bjorndahl, T.C.3
Mandal, R.4
Grant, J.R.5
Wilson, M.6
-
8
-
-
58149341281
-
MetaboMiner semi-automated identification of metabolites from 2D NMR spectra of complex biofluids
-
Xia JG, Bjorndahl TC, Tang P, Wishart DS. MetaboMiner - semi-automated identification of metabolites from 2D NMR spectra of complex biofluids. BMC Bioinformatics. 2008;9:507. doi:10.1186/1471-2105-9-507.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 507
-
-
Xia, J.G.1
Bjorndahl, T.C.2
Tang, P.3
Wishart, D.S.4
-
9
-
-
72249113406
-
RNMR: Open source software for identifying and quantifying metabolites in NMR spectra
-
Lewis IA, Schommer SC, Markley JL. rNMR: open source software for identifying and quantifying metabolites in NMR spectra. Magn Reson Chem. 2009;47:S123-6. doi:10.1002/mrc.2526.
-
(2009)
Magn Reson Chem
, vol.47
-
-
Lewis, I.A.1
Schommer, S.C.2
Markley, J.L.3
-
10
-
-
0033452842
-
An integrated method for spectrum extraction and compound identification from gas chromatography/mass spectrometry data
-
Stein SE. An integrated method for spectrum extraction and compound identification from gas chromatography/mass spectrometry data. J Am Soc Mass Spectr. 1999;10(8):770-81. doi:10.1016/S1044-0305(99)00047-1.
-
(1999)
J am Soc Mass Spectr
, vol.10
, Issue.8
, pp. 770-781
-
-
Stein, S.E.1
-
11
-
-
26444491700
-
Setup and annotation of metabolomic experiments by integrating biological and mass spectrometric metadata
-
Fiehn O, Wohlgemuth G, Scholz M. Setup and annotation of metabolomic experiments by integrating biological and mass spectrometric metadata. Lect Notes Comput Sci. 2005;3615:224-39. doi:10.1007/11530084_18.
-
(2005)
Lect Notes Comput Sci
, vol.3615
, pp. 224-239
-
-
Fiehn, O.1
Wohlgemuth, G.2
Scholz, M.3
-
12
-
-
33751373090
-
MetaQuant: A tool for the automatic quantification of GC/MS-based metabolome data
-
Bunk B, Kucklick M, Jonas R, Munch R, Schobert M, Jahn D, et al. MetaQuant: a tool for the automatic quantification of GC/MS-based metabolome data. Bioinformatics. 2006;22(23):2962-5. doi:10.1093/bioinformatics/btl526.
-
(2006)
Bioinformatics
, vol.22
, Issue.23
, pp. 2962-2965
-
-
Bunk, B.1
Kucklick, M.2
Jonas, R.3
Munch, R.4
Schobert, M.5
Jahn, D.6
-
13
-
-
77955396600
-
The MetabolomeExpress Project: Enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datasets
-
Carroll AJ, Badger MR, Millar AH. The MetabolomeExpress Project: enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datasets. BMC Bioinformatics. 2010;11. doi:10.1186/1471-2105-11-376.
-
(2010)
BMC Bioinformatics
, pp. 11
-
-
Carroll, A.J.1
Badger, M.R.2
Millar, A.H.3
-
14
-
-
66149088821
-
MetaboliteDetector: Comprehensive analysis tool for targeted and nontargeted GC/MS based metabolome analysis
-
Hiller K, Hangebrauk J, Jager C, Spura J, Schreiber K, Schomburg D. MetaboliteDetector: comprehensive analysis tool for targeted and nontargeted GC/MS based metabolome analysis. Anal Chem. 2009;81(9):3429-39. doi:10.1021/ac802689c.
-
(2009)
Anal Chem
, vol.81
, Issue.9
, pp. 3429-3439
-
-
Hiller, K.1
Hangebrauk, J.2
Jager, C.3
Spura, J.4
Schreiber, K.5
Schomburg, D.6
-
15
-
-
40049092920
-
TagFinder for the quantitative analysis of gas chromatography - Mass spectrometry (GC-MS)-based metabolite profiling experiments
-
Luedemann A, Strassburg K, Erban A, Kopka J. TagFinder for the quantitative analysis of gas chromatography - mass spectrometry (GC-MS)-based metabolite profiling experiments. Bioinformatics. 2008;24(5):732-7. doi:10.1093/bioinformatics/btn023.
-
(2008)
Bioinformatics
, vol.24
, Issue.5
, pp. 732-737
-
-
Luedemann, A.1
Strassburg, K.2
Erban, A.3
Kopka, J.4
-
16
-
-
20044368617
-
GC-MS libraries for the rapid identification of metabolites in complex biological samples
-
Schauer N, Steinhauser D, Strelkov S, Schomburg D, Allison G, Moritz T, et al. GC-MS libraries for the rapid identification of metabolites in complex biological samples. FEBS Lett. 2005;579(6):1332-7. doi:10.1016/j.febslet.2005.01.029.
-
(2005)
FEBS Lett
, vol.579
, Issue.6
, pp. 1332-1337
-
-
Schauer, N.1
Steinhauser, D.2
Strelkov, S.3
Schomburg, D.4
Allison, G.5
Moritz, T.6
-
17
-
-
72449186517
-
FiehnLib: Mass spectral and retention index libraries for metabolomics based on quadrupole and time-of-flight gas chromatography/ mass spectrometry
-
Kind T, Wohlgemuth G, Lee DY, Lu Y, Palazoglu M, Shahbaz S, et al. FiehnLib: mass spectral and retention index libraries for metabolomics based on quadrupole and time-of-flight gas chromatography/ mass spectrometry. Anal Chem. 2009;81(24):10038-48. doi:10.1021/ac9019522.
-
(2009)
Anal Chem
, vol.81
, Issue.24
, pp. 10038-10048
-
-
Kind, T.1
Wohlgemuth, G.2
Lee, D.Y.3
Lu, Y.4
Palazoglu, M.5
Shahbaz, S.6
-
18
-
-
48949102784
-
The human cerebrospinal fluid metabolome
-
Wishart DS, Lewis MJ, Morrissey JA, Flegel MD, Jeroncic K, Xiong YP, et al. The human cerebrospinal fluid metabolome. J Chromatogr B. 2008;871(2):164-73. doi:10.1016/j.jchromb.2008.05.001.
-
(2008)
J Chromatogr B
, vol.871
, Issue.2
, pp. 164-173
-
-
Wishart, D.S.1
Lewis, M.J.2
Morrissey, J.A.3
Flegel, M.D.4
Jeroncic, K.5
Xiong, Y.P.6
-
19
-
-
79951892537
-
The human serum metabolome
-
Psychogios N, Hau DD, Peng J, Guo AC, Mandal R, Bouatra S, et al. The human serum metabolome. Plos One. 2011;6(2). doi:10.1371/journal.pone.0016957.
-
(2011)
Plos One
, vol.6
, Issue.2
-
-
Psychogios, N.1
Hau, D.D.2
Peng, J.3
Guo, A.C.4
Mandal, R.5
Bouatra, S.6
-
20
-
-
84883331522
-
The human urine metabolome
-
Bouatra S, Aziat F, Mandal R, Guo AC, Wilson MR, Knox C, et al. The human urine metabolome. Plos One. 2013;8(9). doi:10.1371/journal.pone.0073076.
-
(2013)
Plos One
, vol.8
, Issue.9
-
-
Bouatra, S.1
Aziat, F.2
Mandal, R.3
Guo, A.C.4
Wilson, M.R.5
Knox, C.6
-
21
-
-
33646754900
-
Metabolomic database annotations via query of elemental compositions: Mass accuracy is insufficient even at less than 1 ppm
-
Kind T, Fiehn O. Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1 ppm. BMC Bioinformatics. 2006;7. doi:10.1186/1471-2105-7-234.
-
(2006)
BMC Bioinformatics
, pp. 7
-
-
Kind, T.1
Fiehn, O.2
-
22
-
-
77958506191
-
MI-pack: Increased confidence of metabolite identification in mass spectra by integrating accurate masses and metabolic pathways
-
Weber RJM, Viant MR. MI-pack: increased confidence of metabolite identification in mass spectra by integrating accurate masses and metabolic pathways. Chemometr Intell Lab. 2010;104(1):75-82. doi:10.1016/j.chemolab.2010.04.010.
-
(2010)
Chemometr Intell Lab
, vol.104
, Issue.1
, pp. 75-82
-
-
Weber, R.1
Viant, M.R.2
-
23
-
-
84899545271
-
ProbMetab: An R package for Bayesian probabilistic annotation of LC-MS-based metabolomics
-
Silva RR, Jourdan F, Salvanha DM, Letisse F, Jamin EL, Guidetti-Gonzalez S, et al. ProbMetab: an R package for Bayesian probabilistic annotation of LC-MS-based metabolomics. Bioinformatics. 2014;30(9):1336-7. doi:10.1093/bioinformatics/btu019.
-
(2014)
Bioinformatics
, vol.30
, Issue.9
, pp. 1336-1337
-
-
Silva, R.R.1
Jourdan, F.2
Salvanha, D.M.3
Letisse, F.4
Jamin, E.L.5
Guidetti-Gonzalez, S.6
-
24
-
-
84911371686
-
MetAssign: Probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach
-
Daly R, Rogers S, Wandy J, Jankevics A, Burgess KEV, Breitling R. MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach. Bioinformatics. 2014;30(19):2764-71. doi:10.1093/bioinformatics/btu370.
-
(2014)
Bioinformatics
, vol.30
, Issue.19
, pp. 2764-2771
-
-
Daly, R.1
Rogers, S.2
Wandy, J.3
Jankevics, A.4
Burgess, K.5
Breitling, R.6
-
25
-
-
79958135926
-
Molecular signatures database (MSigDB) 3.0
-
Liberzon A, Subramanian A, Pinchback R, Thorvaldsdottir H, Tamayo P, Mesirov JP. Molecular signatures database (MSigDB) 3.0. Bioinformatics. 2011;27(12):1739-40. doi:10.1093/bioinformatics/btr260.
-
(2011)
Bioinformatics
, vol.27
, Issue.12
, pp. 1739-1740
-
-
Liberzon, A.1
Subramanian, A.2
Pinchback, R.3
Thorvaldsdottir, H.4
Tamayo, P.5
Mesirov, J.P.6
-
26
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 2005;102(43):15545-50. doi:10.1073/pnas.0506580102.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.43
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
-
27
-
-
84891760956
-
Data, information, knowledge and principle: Back to metabolism in KEGG
-
Kanehisa M, Goto S, Sato Y, Kawashima M, Furumichi M, Tanabe M. Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res. 2014;42(Database issue):D199-205. doi:10.1093/nar/gkt1076.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.Database issue
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Kawashima, M.4
Furumichi, M.5
Tanabe, M.6
-
28
-
-
84976877782
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
-
Caspi R, Billington R, Ferrer L, Foerster H, Fulcher CA, Keseler IM, et al. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res. 2016;44(D1):D471-80. doi:10.1093/nar/gkv1164.
-
(2016)
Nucleic Acids Res
, vol.44
, Issue.D1
-
-
Caspi, R.1
Billington, R.2
Ferrer, L.3
Foerster, H.4
Fulcher, C.A.5
Keseler, I.M.6
-
29
-
-
77954256613
-
MSEA: A web-based tool to identify biologically meaningful patterns in quantitative metabolomic data
-
Xia JG, Wishart DS. MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data. Nucleic Acids Res. 2010;38:W71-7. doi:10.1093/nar/gkq329.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Xia, J.G.1
Wishart, D.S.2
-
30
-
-
84969916096
-
ConceptMetab: Exploring relationships among metabolite sets to identify links among biomedical concepts
-
Cavalcante RG, Patil S, Weymouth TE, Bendinskas KG, Karnovsky A, Sartor MA. ConceptMetab: exploring relationships among metabolite sets to identify links among biomedical concepts. Bioinformatics. 2016;32(10):1536-43. doi:10.1093/bioinformatics/btw016.
-
(2016)
Bioinformatics
, vol.32
, Issue.10
, pp. 1536-1543
-
-
Cavalcante, R.G.1
Patil, S.2
Weymouth, T.E.3
Bendinskas, K.G.4
Karnovsky, A.5
Sartor, M.A.6
-
31
-
-
84924916468
-
BiNChE: A web tool and library for chemical enrichment analysis based on the ChEBI ontology
-
Moreno P, Beisken S, Harsha B, Muthukrishnan V, Tudose I, Dekker A, et al. BiNChE: a web tool and library for chemical enrichment analysis based on the ChEBI ontology. BMC Bioinformatics. 2015;16. doi:10.1186/s12859-015-0486-3.
-
(2015)
BMC Bioinformatics
, pp. 16
-
-
Moreno, P.1
Beisken, S.2
Harsha, B.3
Muthukrishnan, V.4
Tudose, I.5
Dekker, A.6
-
32
-
-
80053450964
-
The chemical information ontology: Provenance and disambiguation for chemical data on the biological semantic web
-
Hastings J, Chepelev L, Willighagen E, Adams N, Steinbeck C, Dumontier M. The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web. Plos One. 2011;6(10):e25513. doi:10.1371/journal.pone.0025513.
-
(2011)
Plos One
, vol.6
, Issue.10
-
-
Hastings, J.1
Chepelev, L.2
Willighagen, E.3
Adams, N.4
Steinbeck, C.5
Dumontier, M.6
-
33
-
-
79959441218
-
MPEA-metabolite pathway enrichment analysis
-
Kankainen M, Gopalacharyulu P, Holm L, Oresic M. MPEA-metabolite pathway enrichment analysis. Bioinformatics. 2011;27(13):1878-9. doi:10.1093/bioinformatics/btr278.
-
(2011)
Bioinformatics
, vol.27
, Issue.13
, pp. 1878-1879
-
-
Kankainen, M.1
Gopalacharyulu, P.2
Holm, L.3
Oresic, M.4
-
34
-
-
80053976986
-
Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA
-
Kamburov A, Cavill R, Ebbels TMD, Herwig R, Keun HC. Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA. Bioinformatics. 2011;27(20):2917-8. doi:10.1093/bioinformatics/btr499.
-
(2011)
Bioinformatics
, vol.27
, Issue.20
, pp. 2917-2918
-
-
Kamburov, A.1
Cavill, R.2
Ebbels, T.3
Herwig, R.4
Keun, H.C.5
-
35
-
-
79951999565
-
MBRole: Enrichment analysis of metabolomic data
-
Chagoyen M, Pazos F. MBRole: enrichment analysis of metabolomic data. Bioinformatics. 2011;27(5):730-1. doi:10.1093/bioinformatics/btr001.
-
(2011)
Bioinformatics
, vol.27
, Issue.5
, pp. 730-731
-
-
Chagoyen, M.1
Pazos, F.2
-
36
-
-
77956550520
-
MetPA: A web-based metabolomics tool for pathway analysis and visualization
-
Xia JG, Wishart DS. MetPA: a web-based metabolomics tool for pathway analysis and visualization. Bioinformatics. 2010;26(18):2342-4. doi:10.1093/bioinformatics/btq418.
-
(2010)
Bioinformatics
, vol.26
, Issue.18
, pp. 2342-2344
-
-
Xia, J.G.1
Wishart, D.S.2
-
37
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
da Huang W, Sherman BT, Lempicki RA. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 2009;37(1):1-13. doi:10.1093/nar/gkn923.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.1
, pp. 1-13
-
-
Da Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
38
-
-
84896716464
-
A comparison of gene set analysis methods in terms of sensitivity, prioritization and specificity
-
Tarca AL, Bhatti G, Romero R. A comparison of gene set analysis methods in terms of sensitivity, prioritization and specificity. Plos One. 2013;8(11). doi:10.1371/journal.pone.0079217.
-
(2013)
Plos One
, vol.8
, Issue.11
-
-
Tarca, A.L.1
Bhatti, G.2
Romero, R.3
-
41
-
-
84857789315
-
MSEA: Metabolite set enrichment analysis in the MeltDB metabolomics software platform: Metabolic profiling of Corynebacterium glutamicum as an example
-
Persicke M, Ruckert C, Plassmeier J, Stutz LJ, Kessler N, Kalinowski J, et al. MSEA: metabolite set enrichment analysis in the MeltDB metabolomics software platform: metabolic profiling of Corynebacterium glutamicum as an example. Metabolomics. 2012;8(2):310-22. doi:10.1007/s11306-011-0311-6.
-
(2012)
Metabolomics
, vol.8
, Issue.2
, pp. 310-322
-
-
Persicke, M.1
Ruckert, C.2
Plassmeier, J.3
Stutz, L.J.4
Kessler, N.5
Kalinowski, J.6
-
42
-
-
33745626459
-
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
-
Alexa A, Rahnenfuhrer J, Lengauer T. Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics. 2006;22(13):1600-7. doi:10.1093/bioinformatics/btl140.
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1600-1607
-
-
Alexa, A.1
Rahnenfuhrer, J.2
Lengauer, T.3
-
43
-
-
58049215467
-
A novel signaling pathway impact analysis
-
Tarca AL, Draghici S, Khatri P, Hassan SS, Mittal P, Kim JS, et al. A novel signaling pathway impact analysis. Bioinformatics. 2009;25(1):75-82. doi:10.1093/bioinformatics/btn577.
-
(2009)
Bioinformatics
, vol.25
, Issue.1
, pp. 75-82
-
-
Tarca, A.L.1
Draghici, S.2
Khatri, P.3
Hassan, S.S.4
Mittal, P.5
Kim, J.S.6
-
44
-
-
34548400259
-
A systems biology approach for pathway level analysis
-
Draghici S, Khatri P, Tarca AL, Amin K, Done A, Voichita C, et al. A systems biology approach for pathway level analysis. Genome Res. 2007;17(10):1537-45. doi:10.1101/gr.6202607.
-
(2007)
Genome Res
, vol.17
, Issue.10
, pp. 1537-1545
-
-
Draghici, S.1
Khatri, P.2
Tarca, A.L.3
Amin, K.4
Done, A.5
Voichita, C.6
-
45
-
-
84893009656
-
Methods and approaches in the topology-based analysis of biological pathways
-
Mitrea C, Taghavi Z, Bokanizad B, Hanoudi S, Tagett R, Donato M, et al. Methods and approaches in the topology-based analysis of biological pathways. Front Physiol. 2013;4. doi:10.3389/fphys.2013.00278.
-
(2013)
Front Physiol
, pp. 4
-
-
Mitrea, C.1
Taghavi, Z.2
Bokanizad, B.3
Hanoudi, S.4
Tagett, R.5
Donato, M.6
-
46
-
-
84856562561
-
Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data
-
Karnovsky A, Weymouth T, Hull T, Tarcea VG, Scardoni G, Laudanna C, et al. Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data. Bioinformatics. 2012;28(3):373-80. doi:10.1093/bioinformatics/btr661.
-
(2012)
Bioinformatics
, vol.28
, Issue.3
, pp. 373-380
-
-
Karnovsky, A.1
Weymouth, T.2
Hull, T.3
Tarcea, V.G.4
Scardoni, G.5
Laudanna, C.6
-
47
-
-
34249335649
-
OPLS discriminant analysis: Combining the strengths of PLS-DA and SIMCA classification
-
Bylesjo M, Rantalainen M, Cloarec O, Nicholson JK, Holmes E, Trygg J. OPLS discriminant analysis: combining the strengths of PLS-DA and SIMCA classification. J Chemometr. 2006;20(8-10):341-51. doi:10.1002/cem.1006.
-
(2006)
J Chemometr
, vol.20
, Issue.8-10
, pp. 341-351
-
-
Bylesjo, M.1
Rantalainen, M.2
Cloarec, O.3
Nicholson, J.K.4
Holmes, E.5
Trygg, J.6
-
48
-
-
84864479791
-
MetaboAnalyst 2.0-a comprehensive server for metabolomic data analysis
-
Xia JG, Mandal R, Sinelnikov IV, Broadhurst D, Wishart DS. MetaboAnalyst 2.0-a comprehensive server for metabolomic data analysis. Nucleic Acids Res. 2012;40(W1):W127-33. doi:10.1093/nar/gks374.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.W1
-
-
Xia, J.G.1
Mandal, R.2
Sinelnikov, I.V.3
Broadhurst, D.4
Wishart, D.S.5
-
49
-
-
67849106535
-
MetaboAnalyst: A web server for metabolomic data analysis and interpretation
-
Xia JG, Psychogios N, Young N, Wishart DS. MetaboAnalyst: a web server for metabolomic data analysis and interpretation. Nucleic Acids Res. 2009;37:W652-60. doi:10.1093/nar/gkp356.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Xia, J.G.1
Psychogios, N.2
Young, N.3
Wishart, D.S.4
-
50
-
-
84938818771
-
Analysis of the human adult urinary metabolome variations with Age, body mass index, and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses
-
Thevenot EA, Roux A, Xu Y, Ezan E, Junot C. Analysis of the human adult urinary metabolome variations with Age, body mass index, and gender by implementing a comprehensive workflow for univariate and OPLS statistical analyses. J Proteome Res. 2015;14(8):3322-35. doi:10.1021/acs.jproteome.5b00354.
-
(2015)
J Proteome Res
, vol.14
, Issue.8
, pp. 3322-3335
-
-
Thevenot, E.A.1
Roux, A.2
Xu, Y.3
Ezan, E.4
Junot, C.5
-
51
-
-
84900871742
-
Muma, an R package for metabolomics univariate and multivariate statistical analysis
-
Edoardo G, Francesca C, Dimitrios S, Andrea S, Michela G, Jose MG-M, et al. muma, an R package for metabolomics univariate and multivariate statistical analysis. Curr Metabolomics. 2013;1(2):180-9. doi:10.2174/2213235X11301020005.
-
(2013)
Curr Metabolomics
, vol.1
, Issue.2
, pp. 180-189
-
-
Edoardo, G.1
Francesca, C.2
Dimitrios, S.3
Rea, S.4
Michela, G.5
Jose, M.-M.6
-
52
-
-
80052178654
-
Integrating transcriptomics and metabonomics to unravel modes-of-action of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) in HepG2 cells
-
Jennen D, Ruiz-Aracama A, Magkoufopoulou C, Peijnenburg A, Lommen A, van Delft J, et al. Integrating transcriptomics and metabonomics to unravel modes-of-action of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) in HepG2 cells. BMC Syst Biol. 2011;5:139. doi:10.1186/1752-0509-5-139.
-
(2011)
BMC Syst Biol
, vol.5
, pp. 139
-
-
Jennen, D.1
Ruiz-Aracama, A.2
Magkoufopoulou, C.3
Peijnenburg, A.4
Lommen, A.5
Van Delft, J.6
-
53
-
-
84883580836
-
INMEX-a web-based tool for integrative meta-analysis of expression data
-
Xia J, Fjell CD, Mayer ML, Pena OM, Wishart DS, Hancock RE. INMEX-a web-based tool for integrative meta-analysis of expression data. Nucleic Acids Res. 2013;41(Web Server issue):W63-70. doi:10.1093/nar/gkt338.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.Web Server issue
-
-
Xia, J.1
Fjell, C.D.2
Mayer, M.L.3
Pena, O.M.4
Wishart, D.S.5
Hancock, R.E.6
-
54
-
-
84880851838
-
Predicting network activity from high throughput metabolomics
-
Li SZ, Park Y, Duraisingham S, Strobel FH, Khan N, Soltow QA, et al. Predicting network activity from high throughput metabolomics. Plos Comput Biol. 2013;9(7). doi:10.1371/journal.pcbi.1003123.
-
(2013)
Plos Comput Biol
, vol.9
, Issue.7
-
-
Li, S.Z.1
Park, Y.2
Duraisingham, S.3
Strobel, F.H.4
Khan, N.5
Soltow, Q.A.6
-
55
-
-
84861915827
-
XCMS Online: A web-based platform to process untargeted metabolomic data
-
Tautenhahn R, Patti GJ, Rinehart D, Siuzdak G. XCMS Online: a web-based platform to process untargeted metabolomic data. Anal Chem. 2012;84(11):5035-9. doi:10.1021/ac300698c.
-
(2012)
Anal Chem
, vol.84
, Issue.11
, pp. 5035-5039
-
-
Tautenhahn, R.1
Patti, G.J.2
Rinehart, D.3
Siuzdak, G.4
-
56
-
-
84939884526
-
MarVis-Pathway: Integrative and exploratory pathway analysis of non-targeted metabolomics data
-
Kaever A, Landesfeind M, Feussner K, Mosblech A, Heilmann I, Morgenstern B, et al. MarVis-Pathway: integrative and exploratory pathway analysis of non-targeted metabolomics data. Metabolomics. 2015;11(3):764-77. doi:10.1007/s11306-014-0734-y.
-
(2015)
Metabolomics
, vol.11
, Issue.3
, pp. 764-777
-
-
Kaever, A.1
Landesfeind, M.2
Feussner, K.3
Mosblech, A.4
Heilmann, I.5
Morgenstern, B.6
|