-
1
-
-
84903421930
-
Zymomonas mobilis: a novel platform for future biorefineries
-
He MX, Wu B, Qin H, Ruan ZY, Tan FR, Wang JL, Shui ZX, Dai LC, Zhu QL, Pan K, Tang XY, Wang WG, Hu QC. 2014. Zymomonas mobilis: a novel platform for future biorefineries. Biotechnol Biofuels 7:101. http:// dx.doi.org/10.1186/1754-6834-7-101.
-
(2014)
Biotechnol Biofuels
, vol.7
, pp. 101
-
-
He, M.X.1
Wu, B.2
Qin, H.3
Ruan, Z.Y.4
Tan, F.R.5
Wang, J.L.6
Shui, Z.X.7
Dai, L.C.8
Zhu, Q.L.9
Pan, K.10
Tang, X.Y.11
Wang, W.G.12
Hu, Q.C.13
-
2
-
-
0013585199
-
Ethanol production in a continuous process with cell recycle
-
Tribe DE, Rogers PL. 1984. Ethanol production in a continuous process with cell recycle. U.S. patent 4443544.
-
(1984)
-
-
Tribe, D.E.1
Rogers, P.L.2
-
3
-
-
84942887758
-
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
-
Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, He G, Chen Y, Pan Q, Liu Y, Tang J, Wu G, Zhang H, Shi Y, Liu Y, Yu C, Wang B, Lu Y, Han C, Cheung DW, Yiu S-M, Peng S, Xiaoqian Z, Liu G, Liao X, Li Y, Yang H, Wang J, Lam T-W, Wang J. 2012. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 1:18. http://dx.doi.org/10.1186/2047-217X-1-18.
-
(2012)
GigaScience
, vol.1
, pp. 18
-
-
Luo, R.1
Liu, B.2
Xie, Y.3
Li, Z.4
Huang, W.5
Yuan, J.6
He, G.7
Chen, Y.8
Pan, Q.9
Liu, Y.10
Tang, J.11
Wu, G.12
Zhang, H.13
Shi, Y.14
Liu, Y.15
Yu, C.16
Wang, B.17
Lu, Y.18
Han, C.19
Cheung, D.W.20
Yiu, S-M.21
Peng, S.22
Xiaoqian, Z.23
Liu, G.24
Liao, X.25
Li, Y.26
Yang, H.27
Wang, J.28
Lam, T-W.29
Wang, J.30
more..
-
4
-
-
0033555906
-
Tandem repeats finder: a program to analyze DNA sequences
-
Benson G. 1999. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 27:573-580. http://dx.doi.org/10.1093/nar/ 27.2.573.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 573-580
-
-
Benson, G.1
-
5
-
-
34147132825
-
Identifying bacterial genes and endosymbiont DNA with Glimmer
-
Delcher AL, Bratke KA, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673-679. http://dx.doi.org/10.1093/bioinformatics/btm009.
-
(2007)
Bioinformatics
, vol.23
, pp. 673-679
-
-
Delcher, A.L.1
Bratke, K.A.2
Powers, E.C.3
Salzberg, S.L.4
-
6
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, Yamanishi Y. 2008. KEGG for linking genomes to life and the environment. Nucleic Acids Res 36:D480-D484. http://dx.doi.org/10.1093/nar/gkm882.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. D480-D484
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
Yamanishi, Y.11
-
7
-
-
6044271269
-
Swiss-Prot: juggling between evolution and stability
-
Bairoch A, Boeckmann B, Ferro S, Gasteiger E. 2004. Swiss-Prot: juggling between evolution and stability. Brief Bioinform 5:39-55. http:// dx.doi.org/10.1093/bib/5.1.39.
-
(2004)
Brief Bioinform
, vol.5
, pp. 39-55
-
-
Bairoch, A.1
Boeckmann, B.2
Ferro, S.3
Gasteiger, E.4
-
8
-
-
0042902833
-
The COG database: an updated version includes eukaryotes
-
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA. 2003. The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4:41. http://dx.doi.org/10.1186/1471-2105-4-41.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
Krylov, D.M.7
Mazumder, R.8
Mekhedov, S.L.9
Nikolskaya, A.N.10
Rao, B.S.11
Smirnov, S.12
Sverdlov, A.V.13
Vasudevan, S.14
Wolf, Y.I.15
Yin, J.J.16
Natale, D.A.17
-
9
-
-
84899518211
-
Inter-ProScan 5: genome-scale protein function classification
-
Jones P, Binns D, Chang H-Y, Fraser M, Li W, McAnulla C, McWilliam H, Maslen J, Mitchell A, Nuka G, Pesseat S, Quinn AF, Sangrador- Vegas A, Scheremetjew M, Yong S-Y, Lopez R, Hunter S. 2014. Inter- ProScan 5: genome-scale protein function classification. Bioinformatics 30:1236-1240. http://dx.doi.org/10.1093/bioinformatics/btu031.
-
(2014)
Bioinformatics
, vol.30
, pp. 1236-1240
-
-
Jones, P.1
Binns, D.2
Chang, H-Y.3
Fraser, M.4
Li, W.5
McAnulla, C.6
McWilliam, H.7
Maslen, J.8
Mitchell, A.9
Nuka, G.10
Pesseat, S.11
Quinn, A.F.12
Sangrador-Vegas, A.13
Scheremetjew, M.14
Yong, S-Y.15
Lopez, R.16
Hunter, S.17
-
10
-
-
84891763855
-
The carbohydrate-active enzymes database (CAZy) in 2013
-
Lombard V, Golaconda Ramulu H, Drula E, Coutinho PM, Henrissat B. 2014. The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids Res 42:D490-D495. http://dx.doi.org/10.1093/nar/ gkt1178.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D490-D495
-
-
Lombard, V.1
Golaconda Ramulu, H.2
Drula, E.3
Coutinho, P.M.4
Henrissat, B.5
-
11
-
-
34250665888
-
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
-
Lagesen K, Hallin P, Rødland EA, Staerfeldt H-H, Rognes T, Ussery DW. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 35:3100-3108. http://dx.doi.org/10.1093/ nar/gkm160.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 3100-3108
-
-
Lagesen, K.1
Hallin, P.2
Rødland, E.A.3
Staerfeldt, H-H.4
Rognes, T.5
Ussery, D.W.6
-
12
-
-
0030854739
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964. http://dx.doi.org/10.1093/nar/25.5.0955.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
13
-
-
84946094179
-
Rfam 12.0: updates to the RNA families database
-
Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner PP, Jones TA, Tate J, Finn RD. 2015. Rfam 12.0: updates to the RNA families database. Nucleic Acids Res 43:D130-D137. http://dx.doi.org/10.1093/nar/gku1063.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D130-D137
-
-
Nawrocki, E.P.1
Burge, S.W.2
Bateman, A.3
Daub, J.4
Eberhardt, R.Y.5
Eddy, S.R.6
Floden, E.W.7
Gardner, P.P.8
Jones, T.A.9
Tate, J.10
Finn, R.D.11
-
14
-
-
21144437397
-
The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4
-
Seo J-S, Chong H, Park HS, Yoon K-O, Jung C, Kim JJ, Hong JH, Kim H, Kim J-H, Kil J-I, Park CJ, Oh H-M, Lee J-S, Jin S-J, Um H-W, Lee H-J, Oh S-J, Kim JY, Kang HL, Lee SY, Lee KJ, Kang HS. 2005. The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4. Nat Biotechnol 23:63-68. http://dx.doi.org/10.1038/nbt1045.
-
(2005)
Nat Biotechnol
, vol.23
, pp. 63-68
-
-
Seo, J-S.1
Chong, H.2
Park, H.S.3
Yoon, K-O.4
Jung, C.5
Kim, J.J.6
Hong, J.H.7
Kim, H.8
Kim, J-H.9
Kil, J-I.10
Park, C.J.11
Oh, H-M.12
Lee, J-S.13
Jin, S-J.14
Um, H-W.15
Lee, H-J.16
Oh, S-J.17
Kim, J.Y.18
Kang, H.L.19
Lee, S.Y.20
Lee, K.J.21
Kang, H.S.22
more..
-
15
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL. 2004. Versatile and open software for comparing large genomes. Genome Biol 5:R12. http://dx.doi.org/10.1186/gb-2004-5-2-r12.
-
(2004)
Genome Biol
, vol.5
, pp. R12
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
Antonescu, C.6
Salzberg, S.L.7
-
16
-
-
77953826984
-
Improved pairwise alignment of genomic DNA
-
Ph.D. thesis. Pennsylvania State University, University Park, PA
-
Harris RS. 2007. Improved pairwise alignment of genomic DNA. Ph.D. thesis. Pennsylvania State University, University Park, PA.
-
(2007)
-
-
Harris, R.S.1
|