Complete genome sequences of five Zika virus isolates

Genome Announcements

Volumn 4, Issue 3, 2016, Pages

  Ladner, Jason T ^a   Wiley, Michael R ^a   Prieto, Karla ^a   Yasuda, Chadwick Y ^b,g   Nagle, Elyse ^a   Kasper, Matthew R ^c   Reyes, Daniel ^a   Vasilakis, Nikolaos ^d,e   Heang, Vireak ^b   Weaver, Scott C ^d,e   Haddow, Andrew ^a   Tesh, Robert B ^d,e   Sovann, Ly ^f   Palacios, Gustavo ^a  

^a UNITED STATES ARMY MEDICAL RESEARCH INSTITUTE OF INFECTIOUS DISEASES   (United States)

^b US Naval Medical Research Unit No2   (Cambodia)

^c NAVAL MEDICAL RESEARCH CENTER   (United States)

^d UNIVERSITY OF TEXAS MEDICAL BRANCH   (United States)

^e University of Texas Medical Branch School of Medicine   (United States)

^f Cambodian Health Committee   (Cambodia)

^g NAVAL RESEARCH LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85010000907     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00377-16     Document Type: Article

References (13)

1. Mlakar J, Korva M, Tul N, Popović M, Poljšak-Prijatelj M, Mraz J, Kolenc M, Resman Rus K, Vesnaver Vipotnik T, Fabjan Vodušek V, Vizjak A, Pižem J, Petrovec M, Avšič Županc T. Zika virus associated with microcephaly. NEngl J Med 374:951-958. http://dx.doi.org/10.1056/NEJMoa1600651.
2. Oehler E, Watrin L, Larre P, Leparc-Goffart I, Lastere S, Valour F, Baudouin L, Mallet H, Musso D, Ghawche F. 2014. Zika virus infection complicated by Guillain-Barre syndrome-case report, French Polynesia, December 2013. Euro Surveill 19:20720. http://dx.doi.org/10.2807/1560-7917.ES2014.19.9.20720.
3. Dick GWA, Kitchen SF, Haddow AJ. 1952. Zika virus (I). Isolations and serological specificity. Transactions R Soc Trop Med Hyg 46:509-520. http://dx.doi.org/10.1016/0035-9203(52)90042-4.
4. Haddow AD, Schuh AJ, Yasuda CY, Kasper MR, Heang V, Huy R, Guzman H, Tesh RB, Weaver SC. 2012. Genetic characterization of Zika virus strains: geographic expansion of the Asian lineage. PLoS Negl Trop Dis 6:e1477. http://dx.doi.org/10.1371/journal.pntd.0001477.
5. Ioos S, Mallet H-P, Leparc Goffart I, Gauthier V, Cardoso T, Herida M. 2014 Current Zika virus epidemiology and recent epidemics. Med Mal I n f e c t i e u s e s 4 4: 3 0 2-3 0 7. http://dx.doi.org/10.1016/j.medmal.2014.04.008
6. King AM, Adams MJ, Lefkowitz EJ. 2011. Virus taxonomy: classification and nomenclature of viruses: ninth report of the International Committee on Taxonomy of Viruses, vol 9. Academic Press, London.
7. Ladner JT, Beitzel B, Chain PS, Davenport MG, Donaldson EF, Frieman M, Kugelman JR, Kuhn JH, O'Rear J, Sabeti PC, Wentworth DE, Wiley MR, Yu GY, Threat Characterization Consortium, Sozhamannan S, Bradburne C, Palacios G. 2014. Standards for sequencing viral genomes in the era of high-throughput sequencing. mBio 5:e01360-01314. http://dx.doi.org/10.1128/mBio.01360-14.
8. Djikeng A, Halpin R, Kuzmickas R, Depasse J, Feldblyum J, Sengamalay N, Afonso C, Zhang X, Anderson NG, Ghedin E, Spiro DJ. 2008. Viral genome sequencing by random priming methods. BMC Genomics 9:5. http://dx.doi.org/10.1186/1471-2164-9-5.
9. Leguia M, Loyola S, Rios J, Juarez D, Guevara C, Silva M, Prieto K, Wiley M, Kasper MR, Palacios G, Bausch DG. 2015. Full genomic characterization of a Saffold virus isolated in Peru. Pathogens 4:816-825. http://dx.doi.org/10.3390/pathogens4040816.
10. Martin M. 2011. Cutadapt removes adapter sequences from highthroughput sequencing reads. EMBnet J 17:10-12. http://dx.doi.org/10.14806/ej.17.1.200.
11. Schmieder R, Edwards R. 2011. Quality control and preprocessing of metagenomic datasets. BioInformatics 27:863-864. http://dx.doi.org/10.1093/bioinformatics/btr026.
12. Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods 9:357-359. http://dx.doi.org/10.1038/nmeth.1923.
13. Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, Genome Project Data Processing S. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25: 2078-2079. http://dx.doi.org/10.1093/bioinformatics/btp352.