An extended retinotopic map of mouse cortex

eLife

Volumn 6, Issue , 2017, Pages

  Zhuang, Jun ^a   Ng, Lydia ^a   Williams, Derric ^a   Valley, Matthew ^a   Li, Yang ^a   Garrett, Marina ^a   Waters, Jack ^a  

^a ALLEN INSTITUTE FOR BRAIN SCIENCE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BRAIN CORTEX; ANATOMY AND HISTOLOGY; ANIMAL; BRAIN MAPPING; FLUORESCENCE IMAGING; MOUSE; PHYSIOLOGY; REPORTER GENE; VISUAL CORTEX;

ANIMALS; BRAIN MAPPING; GENES, REPORTER; MICE; OPTICAL IMAGING; VISUAL CORTEX;

EID: 85009414478     PISSN: None     EISSN: 2050084X     Source Type: Journal    
DOI: 10.7554/eLife.18372     Document Type: Article

References (55)

1. Andermann ML, Kerlin AM, Reid RC. 2010. Chronic cellular imaging of mouse visual cortex during operant behavior and passive viewing. Frontiers in Cellullar Neuroscience 4:3. doi:10.3389/fncel.2010.00003
2. Andermann ML Kerlin AM, Roumis DK, Glickfeld LL, Reid RC. 2011. Functional specialization of mouse higher visual cortical areas. Neuron 72:1025–1039. doi:10.1016/j.neuron.2011.11.013 PMID: 22196337
3. Bonin V, Histed MH, Yurgenson S, Reid RC. 2011. Local diversity and fine-scale organization of receptive fields in mouse visual cortex. Journal of Neuroscience 31:18506–18521. doi:10.1523/JNEUROSCI.2974-11.2011 PMID: 22171051
4. Canny J. 1986. A computational approach to edge detection. IEEE Transactions on Pattern Analysis and Machine Intelligence 8:679–698. doi:10.1109/TPAMI.1986.4767851 PMID: 21869365
5. Chen TW, Wardill TJ, Sun Y, Pulver SR, Renninger SL, Baohan A, Schreiter ER, Kerr RA, Orger MB, Jayaraman V, Looger LL, Svoboda K, Kim DS. 2013. Ultrasensitive fluorescent proteins for imaging neuronal activity. Nature 499:295–300. doi:10.1038/nature12354 PMID: 23868258
6. Coogan TA, Burkhalter A. 1993. Hierarchical organization of areas in rat visual cortex. Journal of Neuroscience 13:3749–3772. PMID: 7690066
7. Dräger UC. 1975. Receptive fields of single cells and topography in mouse visual cortex. Journal of Comparative Neurology 160:269–290. doi:10.1002/cne.901600302 PMID: 1112925
8. Franklin KBJ, Paxinos G. 2007. The Mouse Brain in Stereotaxic Coordinates. New York: Elsevier.
9. Garrett ME, Nauhaus I, Marshel JH, Callaway EM. 2014. Topography and areal organization of mouse visual cortex. Journal of Neuroscience 34:12587–12600. doi:10.1523/JNEUROSCI.1124-14.2014 PMID: 25209296
10. Gattass R, Nascimento-Silva S, Soares JGM, Lima B, Jansen AK, Diogo ACM, Farias MF, Botelho M. M., E. P., Mariani OS, Azzi J, Fiorani M, Marcondes M, Botelho EP. 2005. Cortical visual areas in monkeys: location, topography, connections, columns, plasticity and cortical dynamics. Philosophical Transactions of the Royal Society B: Biological Sciences 360:709–731. doi:10.1098/rstb.2005.1629
11. Glickfeld LL Andermann ML, Bonin V, Reid RC. 2013. Cortico-cortical projections in mouse visual cortex are functionally target specific. Nature Neuroscience 16:219–226. doi:10.1038/nn.3300 PMID: 23292681
12. Gorski JA, Talley T, Qiu M, Puelles L, Rubenstein JL, Jones KR. 2002. Cortical excitatory neurons and glia, but not GABAergic neurons, are produced in the Emx1-expressing lineage. The Journal of Neuroscience 22:6309–6314. PMID: 12151506
13. Harris JA, Hirokawa KE, Sorensen SA, Gu H, Mills M, Ng LL, Bohn P, Mortrud M, Ouellette B, Kidney J, Smith KA, Dang C, Sunkin S, Bernard A, Oh SW, Madisen L, Zeng H. 2014. Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation. Frontiers in Neural Circuits 8:76. doi:10.3389/fncir.2014.00076 PMID: 25071457
14. Juavinett AL, Nauhaus I, Garrett ME, Zhuang J, Callaway EM. 2017. Automated identification of mouse visual areas with intrinsic signal imaging. Nature Protocol 12(1):32–43. doi:10.1038/nprot.2016.158
15. Kalatsky VA Stryker MP. 2003. New paradigm for optical imaging: temporally encoded maps of intrinsic signal. Neuron 38:529–545. doi:10.1016/S0896-6273(03)00286-1 PMID: 12765606
16. Krestel HE, Mayford M, Seeburg PH, Sprengel R. 2001. A GFP-equipped bidirectional expression module well suited for monitoring tetracycline-regulated gene expression in mouse. Nucleic Acids Research 29:E39. doi:10.1093/nar/29.7.e39 PMID: 11266574
17. Kuan L, Li Y, Lau C, Feng D, Bernard A, Sunkin SM, Zeng H, Dang C, Hawrylycz M, Ng L, Li Y LC. 2015. Neuroinformatics of the allen mouse brain connectivity atlas. Methods 73:4–17. doi:10.1016/j.ymeth.2014.12.013 PMID: 25536338
18. Laing RJ, Turecek J, Takahata T, Olavarria JF. 2015. Identification of e-specific domains and their relation to callosal connections in primary visual cortex of long evans rats. Cerebral Cortex 25:3314–3329. doi:10.1093/cercor/bhu128 PMID: 24969475
19. Laumann TO, Gordon EM, Adeyemo B, Snyder AZ, Joo SJ, Chen MY, Gilmore AW, McDermott KB, Nelson SM, Dosenbach NU, Schlaggar BL, Mumford JA, Poldrack RA, Petersen SE. 2015. Functional system and areal organization of a highly sampled individual human brain. Neuron 87:657–670. doi:10.1016/j.neuron.2015.06.037 PMID: 26212711
20. Madisen L, Garner AR, Shimaoka D, Chuong AS, Klapoetke NC, Li L, van der Bourg A, Niino Y, Egolf L, Monetti C, Gu H, Mills M, Cheng A, Tasic B, Nguyen TN, Sunkin SM, Benucci A, Nagy A, Miyawaki A, Helmchen F, et al. 2015. Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance. Neuron 85:942–958. doi:10.1016/j.neuron.2015.02.022 PMID: 25741722
21. Malach R. 1989. Patterns of connections in rat visual cortex. Journal of Neuroscience 9:3741–3752. PMID: 247 9724
22. Marshel JH, Garrett ME, Nauhaus I, Callaway EM. 2011. Functional specialization of seven mouse visual cortical areas. Neuron 72:1040–1054. doi:10.1016/j.neuron.2011.12.004 PMID: 22196338
23. Mayford M, Bach ME, Huang YY, Wang L, Hawkins RD, Kandel ER. 1996. Control of memory formation through regulated expression of a CaMKII transgene. Science 274:1678–1683. doi:10.1126/science.274.5293.1678 PMID: 8939850
24. Mukamel EA, Nimmerjahn A, Schnitzer MJ. 2009. Automated analysis of cellular signals from large-scale calcium imaging data. Neuron 63:747–760. doi:10.1016/j.neuron.2009.08.009 PMID: 19778505
25. Murakami T, Yoshida T, Matsui T, Ohki K. 2015. Wide-field Ca(2+) imaging reveals visually evoked activity in the retrosplenial area. Frontiers in Molecular Neuroscience 8:20. doi:10.3389/fnmol.2015.00020 PMID: 26106292
26. Nassi JJ, Callaway EM. 2009. Parallel processing strategies of the primate visual system. Nature Reviews Neuroscience 10:360–372. doi:10.1038/nrn2619 PMID: 19352403
27. Oh SW, Harris JA, Ng L, Winslow B, Cain N, Mihalas S, Wang Q, Lau C, Kuan L, Henry AM, Mortrud MT, Ouellette B, Nguyen TN, Sorensen SA, Slaughterbeck CR, Wakeman W, Li Y, Feng D, Ho A, Nicholas E, et al. 2014. A mesoscale connectome of the mouse brain. Nature 508:207–214. doi:10.1038/nature13186 PMID: 24695228
28. Olavarria J, Mignano LR, Van Sluyters RC. 1982. Pattern of extrastriate visual areas connecting reciprocally with striate cortex in the mouse. Experimental Neurology 78:775–779. doi:10.1016/0014-4886(82)90090-5 PMID: 7173380
29. Olavarria J, Montero VM. 1989. Organization of visual cortex in the mouse revealed by correlating callosal and striate-extrastriate connections. Visual Neuroscience 3:59–69. doi:10.1017/S0952523800012517 PMID: 24870 92
30. Olavarria J, Montero VM. 1981. Reciprocal connections between the striate cortex and extrastriate cortical visual areas in the rat. Brain Research 217:358–363. doi:10.1016/0006-8993(81)90011-1 PMID: 7248793
31. Olavarria J, Montero VM. 1984. Relation of callosal and striate-extrastriate cortical connections in the rat: morphological definition of extrastriate visual areas. Experimental Brain Research 54:240–252. doi:10.1007/BF00236223 PMID: 6723844
32. Olcese U, Iurilli G, Medini P. 2013. Cellular and synaptic architecture of multisensory integration in the mouse neocortex. Neuron 79:579–593. doi:10.1016/j.neuron.2013.06.010 PMID: 23850594
33. Orban GA, Van Essen D, Vanduffel W. 2004. Comparative mapping of higher visual areas in monkeys and humans. Trends in Cognitive Sciences 8:315–324. doi:10.1016/j.tics.2004.05.009
34. Pisauro MA Dhruv NT, Carandini M, Benucci A. 2013. Fast hemodynamic responses in the visual cortex of the awake mouse. Journal of Neuroscience 33:18343–18351. doi:10.1523/JNEUROSCI.2130-13.2013 PMID: 24227743
35. Polack PO, Contreras D. 2012. Long-range parallel processing and local recurrent activity in the visual cortex of the mouse. Journal of Neuroscience 32:11120–11131. doi:10.1523/JNEUROSCI.6304-11.2012 PMID: 22875 943
36. Remtulla S, Hallett PE. 1985. A schematic eye for the mouse, and comparisons with the rat. Vision Research 25:21–31. doi:10.1016/0042-6989(85)90076-8 PMID: 3984214
37. Roth MM, Helmchen F, Kampa BM. 2012. Distinct functional properties of primary and posteromedial visual area of mouse neocortex. Journal of Neuroscience 32:9716–9726. doi:10.1523/JNEUROSCI.0110-12.2012 PMID: 22787057
38. Schuett S, Bonhoeffer T, Hübener M. 2002. Mapping retinotopic structure in mouse visual cortex with optical imaging. Journal of Neuroscience 22:6549–6559. PMID: 12151534
39. Sereno MI, Dale AM, Reppas JB, Kwong KK, Belliveau JW, Brady TJ, Rosen BR, Tootell RB. 1995. Borders of multiple visual areas in humans revealed by functional magnetic resonance imaging. Science 268:889–893. doi:10.1126/science.7754376 PMID: 7754376
40. Sereno MI, McDonald CT, Allman JM. 1994. Analysis of retinotopic maps in extrastriate cortex. Cerebral Cortex 4:601–620. doi:10.1093/cercor/4.6.601 PMID: 7703687
41. Silver MA, Kastner S. 2009. Topographic maps in human frontal and parietal cortex. Trends in Cognitive Sciences 13:488–495. doi:10.1016/j.tics.2009.08.005
42. Thomas HC Espinoza SG. 1987. Relationships between interhemispheric cortical connections and visual areas in hooded rats. Brain Research 417:214–224. doi:10.1016/0006-8993(87)90445-8 PMID: 3651812
43. Tohmi M, Meguro R, Tsukano H, Hishida R, Shibuki K. 2014. The extrageniculate visual pathway generates distinct response properties in the higher visual areas of mice. Current Biology 24:587–597. doi:10.1016/j.cub.2014.01.061 PMID: 24583013
44. Tootell RB, Hamilton SL, Silverman MS, Switkes E. 1988. Functional anatomy of macaque striate cortex. I. Ocular dominance, binocular interactions, and baseline conditions. Journal of Neuroscience 8:1500–1530. PMID: 3367209
45. Van der Gucht E, Hof PR, Van Brussel L, Burnat K, Arckens L. 2007. Neurofilament protein and neuronal activity markers define regional architectonic parcellation in the mouse visual cortex. Cerebral Cortex 17:2805–2819. doi:10.1093/cercor/bhm012 PMID: 17337746
46. Van Essen DC. 2003. Organization of visual areas in macaque and human cerebral cortex. In: Chalupa L. M, Werner J. S (Eds). The Visual Neurosciences. Boston: Bradford Books. p 507–521.
47. Vann SD, Aggleton JP, Maguire EA. 2009. What does the retrosplenial cortex do? Nature Reviews Neuroscience 10:792–802. doi:10.1038/nrn2733 PMID: 19812579
48. Wagor E, Mangini NJ, Pearlman AL. 1980. Retinotopic organization of striate and extrastriate visual cortex in the mouse. The Journal of Comparative Neurology 193:187–202. doi:10.1002/cne.901930113 PMID: 6776164
49. Wandell BA, Dumoulin SO, Brewer AA. 2007. Visual field maps in human cortex. Neuron 56:366–383. doi:10.1016/j.neuron.2007.10.012 PMID: 17964252
50. Wang Q, Burkhalter A. 2007. Area map of mouse visual cortex. The Journal of Comparative Neurology 502:339–357. doi:10.1002/cne.21286 PMID: 17366604
51. Wang Q, Burkhalter A. 2013. Stream-related preferences of inputs to the superior colliculus from areas of dorsal and ventral streams of mouse visual cortex. Journal of Neuroscience 33:1696–1705. doi:10.1523/JNEUROSCI.3067-12.2013 PMID: 23345242
52. Wang Q, Gao E, Burkhalter A. 2011. Gateways of ventral and dorsal streams in mouse visual cortex. Journal of Neuroscience 31:1905–1918. doi:10.1523/JNEUROSCI.3488-10.2011 PMID: 21289200
53. Wang Q, Sporns O, Burkhalter A. 2012. Network analysis of corticocortical connections reveals ventral and dorsal processing streams in mouse visual cortex. Journal of Neuroscience 32:4386–4399. doi:10.1523/JNEUROSCI.6063-11.2012 PMID: 22457489
54. Warnking J, Dojat M, Guérin-Dugué A, Delon-Martin C, Olympieff S, Richard N, Chéhikian A, Segebarth C. 2002. fMRI retinotopic mapping–step by step. NeuroImage 17:1665–1683. doi:10.1006/nimg.2002.1304 PMID: 12498741
55. Wilms M, Eickhoff SB, Hömke L, Rottschy C, Kujovic M, Amunts K, Fink GR. 2010. Comparison of functional and cytoarchitectonic maps of human visual areas V1, V2, V3d, V3v, and V4(v). NeuroImage 49:1171–1179. doi:10.1016/j.neuroimage.2009.09.063 PMID: 19800409