메뉴 건너뛰기




Volumn 409, Issue 9, 2017, Pages 2393-2400

Improved single-step enrichment methods of cross-linked products for protein structure analysis and protein interaction mapping

Author keywords

Cross linking; Enrichment; Protein conformation; Protein protein interactions; Solid phase extraction; Strong cation exchange

Indexed keywords

BLAST ENRICHMENT; CONFORMATIONS; CROSSLINKING; MAMMALS; PHASE SEPARATION; PROTEINS;

EID: 85009260923     PISSN: 16182642     EISSN: 16182650     Source Type: Journal    
DOI: 10.1007/s00216-017-0185-1     Document Type: Article
Times cited : (32)

References (24)
  • 1
    • 33745742438 scopus 로고    scopus 로고
    • Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein–protein interactions
    • COI: 1:CAS:528:DC%2BD28XmslOqurs%3D
    • Sinz A. Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein–protein interactions. Mass Spectrom Rev. 2006;25:663–82.
    • (2006) Mass Spectrom Rev , vol.25 , pp. 663-682
    • Sinz, A.1
  • 2
    • 79851513173 scopus 로고    scopus 로고
    • The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes
    • COI: 1:CAS:528:DC%2BC3MXhvFWntb0%3D
    • Rappsilber J. The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes. J Struct Biol. 2011;173:530–40.
    • (2011) J Struct Biol , vol.173 , pp. 530-540
    • Rappsilber, J.1
  • 3
    • 84946496591 scopus 로고    scopus 로고
    • XL-MS: protein cross-linking coupled with mass spectrometry
    • COI: 1:CAS:528:DC%2BC2MXhtVeiur3F
    • Holding AN. XL-MS: protein cross-linking coupled with mass spectrometry. Methods. 2015;89:54–63.
    • (2015) Methods , vol.89 , pp. 54-63
    • Holding, A.N.1
  • 4
    • 84938741338 scopus 로고    scopus 로고
    • Structure of full-length p53 tumor suppressor probed by chemical cross-linking and mass spectrometry
    • COI: 1:CAS:528:DC%2BC2MXmsleqtb8%3D
    • Arlt C, Ihling CH, Sinz A. Structure of full-length p53 tumor suppressor probed by chemical cross-linking and mass spectrometry. Proteomics. 2015;15:2746–55.
    • (2015) Proteomics , vol.15 , pp. 2746-2755
    • Arlt, C.1    Ihling, C.H.2    Sinz, A.3
  • 5
    • 84943406553 scopus 로고    scopus 로고
    • Chemical cross-linking and native mass spectrometry: a fruitful combination for structural biology
    • COI: 1:CAS:528:DC%2BC2MXptVSltLo%3D
    • Sinz A, Arlt C, Chorev D, Sharon M. Chemical cross-linking and native mass spectrometry: a fruitful combination for structural biology. Protein Sci. 2015;24:1193–209.
    • (2015) Protein Sci , vol.24 , pp. 1193-1209
    • Sinz, A.1    Arlt, C.2    Chorev, D.3    Sharon, M.4
  • 6
    • 84866117936 scopus 로고    scopus 로고
    • Identification of cross-linked peptides from complex samples
    • COI: 1:CAS:528:DC%2BC38XpvFClu74%3D
    • Yang B, Wu Y-J, Zhu M, Fan S-B, Lin J, Zhang K, et al. Identification of cross-linked peptides from complex samples. Nat Methods. 2012;9:904–6.
    • (2012) Nat Methods , vol.9 , pp. 904-906
    • Yang, B.1    Wu, Y.-J.2    Zhu, M.3    Fan, S.-B.4    Lin, J.5    Zhang, K.6
  • 8
    • 84949106630 scopus 로고    scopus 로고
    • Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry
    • COI: 1:CAS:528:DC%2BC2MXhsFKqu7jO
    • Liu F, Rijkers DTS, Post H, Heck AJR. Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry. Nat Methods. 2015;12:1179–84.
    • (2015) Nat Methods , vol.12 , pp. 1179-1184
    • Liu, F.1    Rijkers, D.T.S.2    Post, H.3    Heck, A.J.R.4
  • 11
    • 12244285932 scopus 로고    scopus 로고
    • Chemical cross-linking and high-performance Fourier transform ion cyclotron resonance mass spectrometry for protein interaction analysis: application to a calmodulin/target peptide complex
    • COI: 1:CAS:528:DC%2BD2cXhtVCmsb3K
    • Kalkhof S, Ihling C, Mechtler K, Sinz A. Chemical cross-linking and high-performance Fourier transform ion cyclotron resonance mass spectrometry for protein interaction analysis: application to a calmodulin/target peptide complex. Anal Chem. 2005;77:495–503.
    • (2005) Anal Chem , vol.77 , pp. 495-503
    • Kalkhof, S.1    Ihling, C.2    Mechtler, K.3    Sinz, A.4
  • 12
    • 0036007815 scopus 로고    scopus 로고
    • Intramolecular cross-linking experiments on cytochrome C and ribonuclease A using an isotope multiplet method
    • COI: 1:CAS:528:DC%2BD38Xht1Cjt7g%3D
    • Pearson KM, Pannell LK, Fales HM. Intramolecular cross-linking experiments on cytochrome C and ribonuclease A using an isotope multiplet method. Rapid Commun Mass Spectrom. 2002;16:149–59.
    • (2002) Rapid Commun Mass Spectrom , vol.16 , pp. 149-159
    • Pearson, K.M.1    Pannell, L.K.2    Fales, H.M.3
  • 13
    • 0035326345 scopus 로고    scopus 로고
    • Isotope-tagged cross-linking reagents. A new tool in mass spectrometric protein interaction analysis
    • Müller DR, Schindler P, Towbin H, Wirth U, Voshol H, Hoving S, et al. Isotope-tagged cross-linking reagents. A new tool in mass spectrometric protein interaction analysis. Anal Chem. 2001;73:1927–34.
    • (2001) Anal Chem , vol.73 , pp. 1927-1934
    • Müller, D.R.1    Schindler, P.2    Towbin, H.3    Wirth, U.4    Voshol, H.5    Hoving, S.6
  • 14
    • 84983036371 scopus 로고    scopus 로고
    • Integrated workflow for structural proteomics studies based on cross-linking/mass spectrometry with an MS/MS cleavable cross-linker
    • COI: 1:CAS:528:DC%2BC28XhtFOkurrO
    • Arlt C, Götze M, Ihling CH, Hage C, Schäfer M, Sinz A. Integrated workflow for structural proteomics studies based on cross-linking/mass spectrometry with an MS/MS cleavable cross-linker. Anal Chem. 2016;88:7930–7.
    • (2016) Anal Chem , vol.88 , pp. 7930-7937
    • Arlt, C.1    Götze, M.2    Ihling, C.H.3    Hage, C.4    Schäfer, M.5    Sinz, A.6
  • 15
    • 77957995588 scopus 로고    scopus 로고
    • Selective enrichment and identification of azide-tagged cross-linked peptides using chemical ligation and mass spectrometry
    • COI: 1:CAS:528:DC%2BC3cXps1eitr4%3D
    • Vellucci D, Kao A, Kaake RM, Rychnovsky SD, Huang L. Selective enrichment and identification of azide-tagged cross-linked peptides using chemical ligation and mass spectrometry. J Am Soc Mass Spectrom. 2010;21:1432–45.
    • (2010) J Am Soc Mass Spectrom , vol.21 , pp. 1432-1445
    • Vellucci, D.1    Kao, A.2    Kaake, R.M.3    Rychnovsky, S.D.4    Huang, L.5
  • 17
    • 33747618271 scopus 로고    scopus 로고
    • Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces
    • COI: 1:CAS:528:DC%2BD28Xnt12ntrs%3D
    • Chu F, Mahrus S, Craik CS, Burlingame AL. Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces. J Am Chem Soc. 2006;128:10362–3.
    • (2006) J Am Chem Soc , vol.128 , pp. 10362-10363
    • Chu, F.1    Mahrus, S.2    Craik, C.S.3    Burlingame, A.L.4
  • 18
    • 66149192287 scopus 로고    scopus 로고
    • Synthesis of biotin-tagged chemical cross-linkers and their applications for mass spectrometry
    • COI: 1:CAS:528:DC%2BD1MXmtVKmtLk%3D
    • Kang S, Mou L, Lanman J, Velu S, Brouillette WJ, Prevelige PE. Synthesis of biotin-tagged chemical cross-linkers and their applications for mass spectrometry. Rapid Commun Mass Spectrom. 2009;23:1719–26.
    • (2009) Rapid Commun Mass Spectrom , vol.23 , pp. 1719-1726
    • Kang, S.1    Mou, L.2    Lanman, J.3    Velu, S.4    Brouillette, W.J.5    Prevelige, P.E.6
  • 19
    • 0042349690 scopus 로고    scopus 로고
    • Chemical cross-linking and mass spectrometry for protein structural modeling
    • COI: 1:CAS:528:DC%2BD3sXlvVGqsLo%3D
    • Back JW, de Jong L, Muijsers AO, de Koster CG. Chemical cross-linking and mass spectrometry for protein structural modeling. J Mol Biol. 2003;331:303–13.
    • (2003) J Mol Biol , vol.331 , pp. 303-313
    • Back, J.W.1    de Jong, L.2    Muijsers, A.O.3    de Koster, C.G.4
  • 20
    • 84857097692 scopus 로고    scopus 로고
    • Optimizing the enrichment of cross-linked products for mass spectrometric protein analysis
    • COI: 1:CAS:528:DC%2BC38Xit1Sktbk%3D
    • Fritzsche R, Ihling CH, Götze M, Sinz A. Optimizing the enrichment of cross-linked products for mass spectrometric protein analysis. Rapid Commun Mass Spectrom. 2012;26:653–8.
    • (2012) Rapid Commun Mass Spectrom , vol.26 , pp. 653-658
    • Fritzsche, R.1    Ihling, C.H.2    Götze, M.3    Sinz, A.4
  • 21
    • 77149146167 scopus 로고    scopus 로고
    • Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry
    • COI: 1:CAS:528:DC%2BC3cXlvFGkug%3D%3D
    • Chen ZA, Jawhari A, Fischer L, Buchen C, Tahir S, Kamenski T, et al. Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry. EMBO J. 2010;29:717–26.
    • (2010) EMBO J , vol.29 , pp. 717-726
    • Chen, Z.A.1    Jawhari, A.2    Fischer, L.3    Buchen, C.4    Tahir, S.5    Kamenski, T.6
  • 22
    • 41449110185 scopus 로고    scopus 로고
    • Identification of cross-linked peptides from large sequence databases
    • COI: 1:CAS:528:DC%2BD1cXjvFOgu7w%3D
    • Rinner O, Seebacher J, Walzthoeni T, Mueller LN, Beck M, Schmidt A, et al. Identification of cross-linked peptides from large sequence databases. Nat Methods. 2008;5:315–8.
    • (2008) Nat Methods , vol.5 , pp. 315-318
    • Rinner, O.1    Seebacher, J.2    Walzthoeni, T.3    Mueller, L.N.4    Beck, M.5    Schmidt, A.6
  • 23
    • 84857966803 scopus 로고    scopus 로고
    • Leitner A, Reischl R, Walzthoeni T, Herzog F, Bohn S, Förster F, Aebersold R. Expanding the chemical cross-linking toolbox by the use of multiple proteases and enrichment by size exclusion chromatography. 11:M111.014126
    • Leitner A, Reischl R, Walzthoeni T, Herzog F, Bohn S, Förster F, Aebersold R. Expanding the chemical cross-linking toolbox by the use of multiple proteases and enrichment by size exclusion chromatography. Mol Cell Proteomics. 2012;11:M111.014126.
    • (2012) Mol Cell Proteomics.
  • 24
    • 34548183872 scopus 로고    scopus 로고
    • Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips
    • COI: 1:CAS:528:DC%2BD2sXhtFagtr3O
    • Rappsilber J, Mann M, Ishihama Y. Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips. Nat Protoc. 2007;2:1896–906.
    • (2007) Nat Protoc , vol.2 , pp. 1896-1906
    • Rappsilber, J.1    Mann, M.2    Ishihama, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.