Biochemical and structural characterization of Klebsiella pneumoniae oxamate amidohydrolase in the uric acid degradation pathway:

Acta Crystallographica Section D: Structural Biology

Volumn 72, Issue 6, 2016, Pages 808-816

  Hicks, Katherine A ^a   Ealick, Steven E ^a  

^a Department of Obstetrics Gynecology   (United States)

Author keywords

glutamyltranspeptidase; Ntn hydrolase superfamily; selenium SAD phasing; uric acid degradation

Indexed keywords

AMIDASE; N-TERMINAL NUCLEOPHILE HYDROLASE; URIC ACID;

CHEMISTRY; ENZYME ACTIVE SITE; ENZYME SPECIFICITY; ENZYMOLOGY; HUMAN; KLEBSIELLA INFECTION; KLEBSIELLA PNEUMONIAE; METABOLISM; MICROBIOLOGY; MOLECULAR MODEL; PROTEIN CONFORMATION; X RAY CRYSTALLOGRAPHY;

AMIDOHYDROLASES; CATALYTIC DOMAIN; CRYSTALLOGRAPHY, X-RAY; HUMANS; KLEBSIELLA INFECTIONS; KLEBSIELLA PNEUMONIAE; MODELS, MOLECULAR; PROTEIN CONFORMATION; SUBSTRATE SPECIFICITY; URIC ACID;

EID: 85009083871     PISSN: None     EISSN: 20597983     Source Type: Journal    
DOI: 10.1107/S2059798316007099     Document Type: Article

References (37)

1. Adams, P. D. et al. (2010). Acta Cryst. D66, 213-221.
2. Boanca, G., Sand, A., Okada, T., Suzuki, H., Kumagai, H., Fukuyama, K. & Barycki, J. J. (2007). J. Biol. Chem. 282, 534-541.
3. Brannigan, J. A., Dodson, G., Duggleby, H. J., Moody, P. C. E., Smith, J. L., Tomchick, D. R. & Murzin, A. G. (1995). Nature (London), 378, 416-419.
4. Castonguay, R., Halim, D., Morin, M., Furtos, A., Lherbet, C., Bonneil, E., Thibault, P. & Keillor, J. W. (2007). Biochemistry, 46, 12253-12262.
5. DeLano, W. L. (2008). PyMOL. http://www.pymol.org.
6. Duggleby, H. J., Tolley, S. P., Hill, C. P., Dodson, E. J., Dodson, G. & Moody, P. C. E. (1995). Nature (London), 373, 264-268.
7. Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. (2010). Acta Cryst. D66, 486-501.
8. French, J. B. & Ealick, S. E. (2010). Biochemistry, 49, 5975-5977.
9. Groll, M., Ditzel, L., Lowe, J., Stock, D., Bochtler, M., Bartunik, H. D. & Huber, R. (1997). Nature (London), 386, 463-471.
10. Holm, L. & Rosenstrom, P. (2010). Nucleic Acids Res. 38, W545-W549.
11. Krissinel, E. & Henrick, K. (2007). J. Mol. Biol. 372, 774-797.
12. Laskowski, R. A. (2009). Nucleic Acids Res. 37, D355-D359.
13. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993). J. Appl. Cryst. 26, 283-291.
14. Matthews, B. W. (1968). J. Mol. Biol. 33, 491-497.
15. Menard, A., Castonguay, R., Lherbet, C., Rivard, C., Roupioz, Y. & Keillor, J. W. (2001). Biochemistry, 40, 12678-12685.
16. Muchmore, C. R. A., Krahn, J. M., Smith, J. L., Kim, J. H. & Zalkin, H. (1998). Protein Sci. 7, 39-51.
17. Muratsubaki, H., Satake, K. & Enomoto, K. (2006). Anal. Biochem. 359, 161-166.
18. Oinonen, C. & Rouvinen, J. (2000). Protein Sci. 9, 2329-2337.
19. Oinonen, C., Tikkanen, R., Rouvinen, J. L. & Peltonen, L. (1995). Nature Struct. Biol. 2, 1102-1108.
20. Okada, T., Suzuki, H., Wada, K., Kumagai, H. & Fukuyama, K. (2006). Proc. Natl Acad. Sci. USA, 103, 6471-6476.
21. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
22. Pope, S. D., Chen, L.-L. & Stewart, V. (2009). J. Bacteriol. 191, 1006-1017.
23. Ramazzina, I., Costa, R., Cendron, L., Berni, R., Peracchi, A., Zanotti, G. & Percudani, R. (2010). Nature Chem. Biol. 6, 801-806.
24. Riva, L. de la, Badia, J., Aguilar, J., Bender, R. A. & Baldoma, L. (2008). J. Bacteriol. 190, 7892-7903.
25. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual. New York: Cold Spring Harbor Laboratory Press.
26. Serventi, F., Ramazzina, I., Lamberto, I., Puggioni, V., Gatti, R. & Percudani, R. (2009). ACS Chem. Biol. 5, 203-214.
27. Smith, J., Zaluzec, E., Wery, J., Niu, L., Switzer, R., Zalkin, H. & Satow, Y. (1994). Science, 264, 1427-1433.
28. Suzuki, H. & Kumagai, H. (2002). J. Biol. Chem. 277, 43536-43543.
29. Suzuki, H., Kumagai, H., Echigo, T. & Tochikura, T. (1989). J. Bacteriol. 171, 5169-5172.
30. Terwilliger, T. C., Adams, P. D., Read, R. J., McCoy, A. J., Moriarty, N. W., Grosse-Kunstleve, R. W., Afonine, P. V., Zwart, P. H. & Hung, L.-W. (2009). Acta Cryst. D65, 582-601.
31. Vellieux, F. M. & Read, R. J. (1997). Methods Enzymol. 277, 18-53.
32. Vogels, G. D. (1963). Antonie Van Leeuwenhoek, 29, 328.
33. Vogels, G. D. & Van der Drift, C. (1976). Bacteriol. Rev. 40, 403-468.
34. Wada, K., Irie, M., Suzuki, H. & Fukuyama, K. (2010). FEBS J. 277, 1000-1009.
35. Werner, A. K., Romeis, T. & Witte, C.-P. (2010). Nature Chem. Biol. 6, 19-21.
36. Winn, M. D. et al. (2011). Acta Cryst. D67, 235-242.
37. Zrenner, R., Stitt, M., Sonnewald, U. & Boldt, R. (2006). Annu. Rev. Plant Biol. 57, 805-836.