Transcriptomic response of maize primary roots to low temperatures at seedling emergence

PeerJ

Volumn 2017, Issue 1, 2017, Pages 1-17

  Fenza, Mauro Di ^a,b   Hogg, Bridget ^a   Grant, Jim ^b   Barth, Susanne ^b  

^a UNIVERSITY COLLEGE DUBLIN   (Ireland)

^b TEAGASC   (Ireland)

Author keywords

Chilling tolerance; Cold stress; Low temperature; Maize; Roots; Transcriptome

Indexed keywords

TRANSCRIPTOME;

ARTICLE; COLD TOLERANCE; CONTROLLED STUDY; GENE EXPRESSION; GENE POOL; GENETIC ANALYSIS; GERMINATION; HOUSEKEEPING GENE; MAIZE; MICROARRAY ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN EXPRESSION; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION; RNA EXTRACTION; SEEDLING EMERGENCE; SHOOT GROWTH; TRANSCRIPTOMICS;

EID: 85008939464     PISSN: None     EISSN: 21678359     Source Type: Journal    
DOI: 10.7717/peerj.2839     Document Type: Article

References (45)

1. Ahamed A, Murai-Hatano M, Ishikawa-Sakurai J, Hayashi H, Kawamura Y, Uemura M. 2012. Cold stress-induced acclimation in rice is mediated by root-specific aquaporins. Plant & Cell Physiology 53:1445-1456 DOI 10.1093/pcp/pcs089.
2. Aroca R, Vernieri P, Irigoven JJ, Sancher-Diaz M, Tognoni F, Pardossi A. 2003. Involvement of abscisic acid in leaf and root of maize (Zea mays L.) in avoiding chilling-induced water stress. Plant Science 165:671-679 DOI 10.1016/S0168-9452(03)00257-7.
3. Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society: Series B 57:289-300.
4. Blacklow VM. 1972. Influence of temperature on germination and elongation of the radicle and shoot of corn (Zea mays L.). Crop Science 12:647-650 DOI 10.2135/cropsci1972.0011183X001200050028x.
5. Collins RP, Gregory PJ, Rowse HR, Morgan A, Lancashire B. 1987. Improved methods of estimating root length using a photocopier, a light box and a bar code reader. Plant Soil 103:277-280 DOI 10.1007/BF02370401.
6. Di Fenza M. 2013. Examining the physiological and genetic response of maize to low temperature conditions. PhD thesis, University College Dublin. Available at http: // hdl.handle.net/ 11019/ 592.
7. Dong SF, Neilsen D, Neilsen GH, Weis M. 2003. A scanner-based root image acquisition technique for measuring roots on a rhizotron window. HortScience 38:1385-1388.
8. Edreva A. 2005. Pathogenesis-related proteins: Research progress in the last 15 years. General and Applied Plant Physiology 31:105-124.
9. Farooq M, Aziz T, Wahid A, Lee DJ, Siddique KHM. 2009. Chilling tolerance in maize: Agronomic and physiological approaches. Crop and Pasture Science 60:501-514 DOI 10.1071/CP08427.
10. Frei OM. 2000. Changes in yield physiology of corn as a result of breeding in Northern Europe. Maydica 45:173-183.
11. Greaves JA. 1996. Improving suboptimal temperature tolerance in maize - the search for variation. Journal of Experimental Botany 47:307-323 DOI 10.1093/jxb/47.3.307.
12. Gregory PJ, Hutchison D, Read DB, Jenneson PM, Gilboy WB. 2003. Non-invasive imaging of roots with high resolution X-Ray micro-tomography. Plant Soil 255:351-359 DOI 10.1023/A:1026179919689.
13. Hund A, Fracheboud Y, Soldati A, Frascaroli E, Salvi S, Stamp P. 2004. QTL controlling root and shoot traits of maize seedlings under cold stress. Theoretical and Applied Genetics 109:618-629 DOI 10.1007/s00122-004-1665-1.
14. Hund A, Trachsel S, Stamp P. 2009. Growth of axile and lateral roots of maize: I development of a phenotying platform. Plant Soil 325:335-349 DOI 10.1007/s11104-009-9984-2.
15. Janská A, Marsík P, Zelenková S, Ovesná J. 2010. Cold stress and acclimation - What is important for metabolic adjustment? Plant Biology 12:395-405 DOI 10.1111/j.1438-8677.2009.00299.x.
16. Keane GP. 2002. Agronomic factors affecting the yield and quality of forage maize in Ireland: Effect of sowing date and plastic film treatment. Grass and Forage Science 57:3-10 DOI 10.1046/j.1365-2494.2002.00293.x.
17. Kocsy G, Von Ballmoos P, Ruegsegger A, Szalai G, Galiba G, Brunold C. 2001. Increasing the glutathione content in a chilling-sensitive maize genotype using safeners increased protection against chilling-induced injury. Plant Physiology 127:1147-1156.
18. Levitt J. 1980. Chilling, freezing, and high temperature stresses in responses of plants to environmental stress. 2nd edition. New York: Academic Press.
19. Liedgens M, Richner W. 2001. Minirhizotron observations of the spatial distribution of the maize root system. Agronomy Journal 93:1097-1104 DOI 10.2134/agronj2001.9351097x.
20. Lobet G, Pagès L, Draye X. 2011. A novel image-analysis toolbox enabling quantitative analysis of root system architecture. Plant Physiology 157:29-39 DOI 10.1104/pp.111.179895.
21. Lorkoví ZJ. 2009. Role of plant RNA-binding proteins in development, stress response and genome organization. Trends in Plant Science 4:229-236 DOI 10.1016/j.tplants.2009.01.007.
22. Ludwig A, Tenhaken R. 2001. Suppression of the ribosomal L2 gene reveals a novel mechanism for stress adaptation in soybean. Planta 212:792-798 DOI 10.1007/s004250000427.
23. Marocco A, Lorenzoni C, Fracheboud Y. 2005. Chilling stress in maize. Maydica 50:571-580.
24. Miura K, Furumoto T. 2013. Cold signalling and cold response in plants. International Journal of Molecular Sciences 14:5312-5337 DOI 10.3390/ijms14035312.
25. Nguyen HT, Leipner J, Stamp P, Guerra-Peraza O. 2009. Low temperature stress in maize (Zea mays L.) induces genes involved in photosynthesis and signal trans- duction as studied by Suppression Subtractive Hybridization. Plant Physiology and Biochemistry 47:116-122 DOI 10.1016/j.plaphy.2008.10.010.
26. Nie GY, Long SP, Baker NR. 1992. The effects of development at dub-optmial growth temperatures on photosynthetic capacity and susceptibility to chilling- dependent photoinhibition in Zea mays. Physiologia Plantarum 85:554-560 DOI 10.1111/j.1399-3054.1992.tb05826.x.
27. Presterl T, Ouzunova M, Schmidt W, Möller EM, Röber FK, Knaak C, Ernst K, Westhoff P, Geiger HH. 2007. Quantitative trait loci for early plant vigour of maize grown in chilly environments. Theoretical and Applied Genetics 114:1059-1070 DOI 10.1007/s00122-006-0499-4.
28. Puranik S, Sahu PP, Srivastava PS, Prasad M. 2012. NAC proteins: regulation and role in stress tolerance. Trends in Plant Science 17:369-381 DOI 10.1016/j.tplants.2012.02.004.
29. Reimer R. 2008. Response of maize (Zea mays L.) seedlings to low and high temperature: association mapping of root growth and photosynthesis-related traits presented by no. 18807. PhD thesis, Swiss Federal Institute of Technology, Zurich, Switzerland.
30. Revilla P, Rodriguez VM, Ordas A, Rincent R, Charcosset A, Giauffret C, Melchinger AE, Schon CC, Bauer E, Altmann T, Brunel D, Gonzalez JM, Campo L, Ouzunova M, Alvarez A, de Galarreta JIR, Laborde J, Malvar RA. 2016. Association mapping
31. for cold tolerance in two large maize inbred panels. BMC Plant Biology 16:127 DOI 10.1186/s12870-016-0816-2.
32. Riva-Roveda L, Escale B, Giauffret C, Périlleux C. 2016. Maize plants can enter a standby mode to cope with chilling stress. BMC Plant Biology 16:212 DOI 10.1186/s12870-016-0909-y.
33. Ruta N, Liedgens M, Fracheboud Y, Stamp P, Hund A. 2010. QTLs for the elongation of axile and lateral roots of maize in response to low water potential. Theoretical and Applied Genetics 120:621-631 DOI 10.1007/s00122-009-1180-5.
34. Sanguineti MC, Giuliani M, Govi G, Tuberosa R. 1998. Root and shoot traits of maize inbred lines grown in the field and in hydroponic culture and their relationships with root lodging. Maydica 43:211-216.
35. Seifert F, Thiemann A, Pospisil H, Scholten S. 2012. Re-annotation of the maize oligonucleotide array. Maydica 57:49-55.
36. Sobkowiak A, Jóczyk M, Jarochowska E, Biecek P, Trzcinska-Danielewicz J, Leipner J, Fronk J, Sowíski P. 2014. Genome-wide transcriptomic analysis of response to low temperature reveals candidate genes determining divergent cold-sensitivity of maize inbred lines. Plant Molecular Biology 85:317-331 DOI 10.1007/s11103-014-0187-8.
37. Stamp P. 1984. Yield performance of tropical highland maize and its top crosses with middle European hybrids. Z. Acker Pflanzenbau 153:366-372.
38. Stamp P. 1986. Chilling tolerance of young plants demonstrated on the example of maize (Zea mays L.). Advances in Agriculture and Crop Science 7:1-84.
39. Strigens A, Schipprack W, Reif JC, Melchinger AE. 2013. Unlocking the genetic diversity of maize landraces with doubled haploids opens new avenues for breeding. PLOS ONE 8(2):e57234 DOI 10.1371/journal.pone.0057234.
40. Theocharis A, Clément C, Barka EA. 2012. Physiological and molecular changes in plants grown at low temperatures. Planta 235:1091-1105 DOI 10.1007/s00425-012-1641-y.
41. Tollenaar M, Lee EA. 2002. Yield potential, yield stability and stress tolerance in maize. Field Crops Research 75:161-169 DOI 10.1016/S0378-4290(02)00024-2.
42. Untergasser A, Nijveen H, Rao X, Bisseling T, Geurts R, Leunissen JA. 2007. Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Research 35:W71-W74 DOI 10.1093/nar/gkm306.
43. Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F. 2002. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biology 3(7):RESEARCH0034.
44. Van Loon LC, Rep M, Pieterse CMJ. 2006. Significance of inducible defense- related proteins in infected plants. Annual Review of Phytopathology 44:135-162 DOI 10.1146/annurev.phyto.44.070505.143425.
45. Vaseva I, Akiscan Y, Simova-Stoilova L, Kostadinova A, Nenkova R, Anders I, Feller U, Demirevska K. 2012. Antioxidant response to drought in red and white clover. Acta Physiologiae Plantarum 34:1689-1699 DOI 10.1007/S11738-012-0964-964.