Draft genome sequence of triclosan-resistant cystic fibrosis isolate Achromobacter xylosoxidans CF304

Genome Announcements

Volumn 3, Issue 4, 2015, Pages

  Jeukens, Julie ^a   Freschi, Luca ^a   Kukavica Ibrulj, Irena ^a   Nguyen, Dao ^b   Levesque, Roger C ^a  

^a UNIVERSITÉ LAVAL   (Canada)

^b MCGILL UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85008474484     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00865-15     Document Type: Article

References (12)

1. Davies JC, Rubin BK. 2007. Emerging and unusual Gram-negative infections in cystic fibrosis. Semin Respir Crit Care Med 28:312-321. http://dx.doi.org/10.1055/s-2007-981652.
2. Jakobsen TH, Hansen MA, Jensen PØ, Hansen L, Riber L, Cockburn A, Kolpen M, Rønne Hansen C, Ridderberg W, Eickhardt S, Hansen M, Kerpedjiev P, Alhede M, Qvortrup K, Burmølle M, Moser C, Kühl M, Ciofu O, Givskov M, Sørensen SJ, Høiby N, Bjarnsholt T. 2013. Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes. PLoS One 8:e68484. http://dx.doi.org/10.1371/journal.pone.0068484.
3. Trancassini M, Iebba V, Citerà N, Tuccio V, Magni A, Varesi P, De Biase RV, Totino V, Santangelo F, Gagliardi A, Schippa S. 2014. Outbreak of Achromobacter xylosoxidans in an Italian cystic fibrosis center: genome variability, biofilm production, antibiotic resistance, and motility in isolated strains. Front Microbiol 5. http://dx.doi.org/10.3389/fmicb.2014.00138.
4. Lambiase A, Catania MR, del Pezzo M, Rossano F, Terlizzi V, Sepe A, Raia V. 2011. Achromobacter xylosoxidans respiratory tract infection in cystic fibrosis patients. Eur J Clin Microbiol Infect Dis 30:973-980. http://dx.doi.org/10.1007/s10096-011-1182-5.
5. Hansen CR, Pressler T, Nielsen KG, Jensen PØ, Bjarnsholt T, Høiby N. 2010 Inflammation in Achromobacter xylosoxidans infected cystic fibrosis patients. J Cyst Fibros 9:51-58. http://dx.doi.org/10.1016/j.jcf.2009.10.005.
6. D'Arezzo S, Lanini S, Puro V, Ippolito G, Visca P. 2012. High-level tolerance to triclosan may play a role in Pseudomonas aeruginosa antibiotic resistance in immunocompromised hosts: evidence from outbreak investigation. BMC Res Notes 5:43. http://dx.doi.org/10.1186/1756-0500-5-43.
7. Carey DE, Mcnamara PJ. 2014. The impact of triclosan on the spread of antibiotic resistance in the environment. Front Microbiol 5:780. http://dx.doi.org/10.3389/fmicb.2014.00780.
8. Tritt A, Eisen JA, Facciotti MT, Darling AE. 2012. An integrated pipeline for de novo assembly of microbial genomes. PLoS One 7:e42304. http://dx.doi.org/10.1371/journal.pone.0042304.
9. Treangen TJ, Ondov BD, Koren S, Phillippy AM. 2014. The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes. Genome Biol 15:524. http://dx.doi.org/10.1186/PREACCEPT-2573980311437212.
10. Page AJ, Cummins CA, Hunt M, Wong VK, Reuter S, Holden MTG, Fookes M, Keane JA, Parkhill J. 2015. Roary: rapid large-scale prokaryote pan genome analysis. bioRxiv. http://dx.doi.org/10.1101/019315.
11. Zhu L, Lin J, Ma J, Cronan JE, Wang H. 2010. Triclosan resistance of Pseudomonas aeruginosa PAO1 is due to FabV, a triclosan-resistant enoylacyl carrier protein reductase. Antimicrob Agents Chemother 54: 689-698. http://dx.doi.org/10.1128/AAC.01152-09.
12. Zhang Z, Schwartz S, Wagner L, Miller W. 2000. A greedy algorithm for aligning DNA sequences. J Comput Biol 7:203-214. http://dx.doi.org/10.1089/10665270050081478.