메뉴 건너뛰기




Volumn 182, Issue 3, 2017, Pages 1144-1157

Structural Insight into the Gene Expression Profiling of the hcn Operon in Pseudomonas aeruginosa

Author keywords

ANR protein; DNA protein interactions; hcnABC operon; Molecular docking simulations; Molecular modeling

Indexed keywords

BACTERIA; BINS; BIOINFORMATICS; DIMERS; DNA; GENES; IRON COMPOUNDS; MOLECULAR MODELING; PROTEINS; TRANSCRIPTION;

EID: 85008465293     PISSN: 02732289     EISSN: 15590291     Source Type: Journal    
DOI: 10.1007/s12010-016-2388-x     Document Type: Article
Times cited : (6)

References (23)
  • 1
    • 85020948354 scopus 로고    scopus 로고
    • Pseudomonas. Encyclopedia of microbiology (2nd Edn, vol 3, pp. 876–891)
    • Lederberg, J. et al. (2000). Pseudomonas. Encyclopedia of microbiology (2nd Edn, vol 3, pp. 876–891). San Diego.
    • (2000) San Diego
    • Lederberg, J.1
  • 2
    • 0020731751 scopus 로고
    • Infections caused by Pseudomonas aeruginosa
    • COI: 1:STN:280:DyaL3s7ps1Ojtg%3D%3D
    • Bodey, G. P., et al. (1983). Infections caused by Pseudomonas aeruginosa. Reviews of Infectious Diseases, 5(2), 279–313.
    • (1983) Reviews of Infectious Diseases , vol.5 , Issue.2 , pp. 279-313
    • Bodey, G.P.1
  • 3
    • 0031729127 scopus 로고    scopus 로고
    • Cell-to-cell signaling and Pseudomonas aeruginosa infections
    • COI: 1:CAS:528:DyaK1MXptlam
    • Van Delden, C., & Iglewski, B. H. (1998). Cell-to-cell signaling and Pseudomonas aeruginosa infections. Emerging Infectious Diseases, 4(4), 551–560.
    • (1998) Emerging Infectious Diseases , vol.4 , Issue.4 , pp. 551-560
    • Van Delden, C.1    Iglewski, B.H.2
  • 4
    • 0000163181 scopus 로고
    • Cyanide as a metabolic inhibitor
    • Knowles CJ, (ed), Academic Press, London
    • Solomonson, L. P. (1981). Cyanide as a metabolic inhibitor. In C. J. Knowles et al. (Eds.), Cyanide compounds in biology (pp. 11–28). London: Academic Press.
    • (1981) Cyanide compounds in biology , pp. 11-28
    • Solomonson, L.P.1
  • 5
    • 0035685108 scopus 로고    scopus 로고
    • Pseudomonas aeruginosa PAO1 kills Caenorhabditis elegans by cyanide poisoning
    • COI: 1:CAS:528:DC%2BD3MXnsl2hur0%3D
    • Gallagher, L. A., & Manoil, C. (2001). Pseudomonas aeruginosa PAO1 kills Caenorhabditis elegans by cyanide poisoning. Journal of Bacteriology, 183(21), 6207–6214.
    • (2001) Journal of Bacteriology , vol.183 , Issue.21 , pp. 6207-6214
    • Gallagher, L.A.1    Manoil, C.2
  • 6
    • 0034462883 scopus 로고    scopus 로고
    • Transcriptional control of the hydrogen cyanide biosynthetic genes hcnABC by the anaerobic regulator ANR and the quorum-sensing regulators LasR and RhlR in Pseudomonas aeruginosa
    • COI: 1:CAS:528:DC%2BD3MXitVCmurw%3D
    • Pessi, G., & Haas, D. (2000). Transcriptional control of the hydrogen cyanide biosynthetic genes hcnABC by the anaerobic regulator ANR and the quorum-sensing regulators LasR and RhlR in Pseudomonas aeruginosa. Journal of Bacteriology, 182(24), 6940–6949.
    • (2000) Journal of Bacteriology , vol.182 , Issue.24 , pp. 6940-6949
    • Pessi, G.1    Haas, D.2
  • 7
    • 84957436327 scopus 로고    scopus 로고
    • Molecular insight into the activity of LasR protein from Pseudomonas aeruginosa in the regulation of virulence gene expression by this organism
    • COI: 1:CAS:528:DC%2BC28Xks1answ%3D%3D
    • Chowdhury, N., & Bagchi, A. (2016). Molecular insight into the activity of LasR protein from Pseudomonas aeruginosa in the regulation of virulence gene expression by this organism. Gene, 580(1), 80–87.
    • (2016) Gene , vol.580 , Issue.1 , pp. 80-87
    • Chowdhury, N.1    Bagchi, A.2
  • 8
    • 0035824571 scopus 로고    scopus 로고
    • Characterization of the dimerization domain in the FNR transcription factor
    • COI: 1:CAS:528:DC%2BD3MXptVynu7w%3D
    • Moore, L. J., & Kiley, P. J. (2001). Characterization of the dimerization domain in the FNR transcription factor. Journal of Biological Chemistry, 276(49), 45744–45750.
    • (2001) Journal of Biological Chemistry , vol.276 , Issue.49 , pp. 45744-45750
    • Moore, L.J.1    Kiley, P.J.2
  • 9
    • 84959530266 scopus 로고    scopus 로고
    • The crystal structure of the global anaerobic transcriptional regulator FNR explains its extremely fine-tuned monomer-dimer equilibrium
    • Volbeda, A., et al. (2015). The crystal structure of the global anaerobic transcriptional regulator FNR explains its extremely fine-tuned monomer-dimer equilibrium. Science Advances, 1(11), e1501086.
    • (2015) Science Advances , vol.1 , Issue.11
    • Volbeda, A.1
  • 10
    • 33847650393 scopus 로고    scopus 로고
    • Computational alanine scanning mutagenesis—an improved methodological approach
    • COI: 1:CAS:528:DC%2BD2sXhsVWntb8%3D
    • Moreira, I. S., Fernandes, P. A., & Ramos, M. J. (2007). Computational alanine scanning mutagenesis—an improved methodological approach. Journal of Computational Chemistry, 28(3), 644–654.
    • (2007) Journal of Computational Chemistry , vol.28 , Issue.3 , pp. 644-654
    • Moreira, I.S.1    Fernandes, P.A.2    Ramos, M.J.3
  • 11
    • 13444273448 scopus 로고    scopus 로고
    • The Universal Protein Resource (UniProt)
    • Bairoch, A. et al. (2005). The Universal Protein Resource (UniProt). Nucleic Acids Research, 33 (DATABASE ISS.).
    • (2005) Nucleic Acids Research , vol.33
    • Bairoch, A.1
  • 12
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • COI: 1:CAS:528:DyaK3MXitVGmsA%3D%3D
    • Altschul, S. F., et al. (1990). Basic local alignment search tool. Journal of Molecular Biology, 215(3), 403–410.
    • (1990) Journal of Molecular Biology , vol.215 , Issue.3 , pp. 403-410
    • Altschul, S.F.1
  • 13
    • 0033954256 scopus 로고    scopus 로고
    • The protein data bank
    • COI: 1:CAS:528:DC%2BD3cXhvVKjt7w%3D
    • Berman, H. M., et al. (2000). The protein data bank. Nucleic Acids Research, 28(1), 235–242.
    • (2000) Nucleic Acids Research , vol.28 , Issue.1 , pp. 235-242
    • Berman, H.M.1
  • 14
    • 12244290614 scopus 로고    scopus 로고
    • MODELLER a program for protein structure modeling release 9v4, r6262
    • Sali, A., (2008), MODELLER a program for protein structure modeling release 9v4, r6262. Structure, (September), pp. 779–815.
    • (2008) Structure, (September) , pp. 779-815
    • Sali, A.1
  • 15
    • 0000243829 scopus 로고
    • PROCHECK: a program to check the stereochemical quality of protein structures
    • COI: 1:CAS:528:DyaK3sXit12lurY%3D
    • Laskowski, R. A., et al. (1993). PROCHECK: a program to check the stereochemical quality of protein structures. Journal of Applied Crystallography, 26(2), 283–291.
    • (1993) Journal of Applied Crystallography , vol.26 , Issue.2 , pp. 283-291
    • Laskowski, R.A.1
  • 16
    • 0030767485 scopus 로고    scopus 로고
    • VERIFY3D: assessment of protein models with three-dimensional profiles
    • COI: 1:CAS:528:DyaK2sXntFamurY%3D
    • Eisenberg, D., Lüthy, R., & Bowie, J. U. (1997). VERIFY3D: assessment of protein models with three-dimensional profiles. Methods in Enzymology, 277, 396–406.
    • (1997) Methods in Enzymology , vol.277 , pp. 396-406
    • Eisenberg, D.1    Lüthy, R.2    Bowie, J.U.3
  • 17
    • 34547566446 scopus 로고    scopus 로고
    • ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins
    • Wiederstein, M., & Sippl, M. J. (2007). ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins. Nucleic Acids Research, 35(SUPPL.2), W407–W410.
    • (2007) Nucleic Acids Research , vol.35 , pp. W407-W410
    • Wiederstein, M.1    Sippl, M.J.2
  • 18
    • 84986512474 scopus 로고
    • CHARMM: a program for macromolecular energy, minimization, and dynamics calculations
    • COI: 1:CAS:528:DyaL3sXit1aiu7w%3D
    • Brooks, B. R., et al. (1983). CHARMM: a program for macromolecular energy, minimization, and dynamics calculations. Journal of Computational Chemistry, 4(2), 187–217.
    • (1983) Journal of Computational Chemistry , vol.4 , Issue.2 , pp. 187-217
    • Brooks, B.R.1
  • 19
    • 0023769808 scopus 로고
    • Structure and energetics of ligand binding to proteins: Escherichia coli dihydrofolate reductase-trimethoprim, a drug-receptor system
    • COI: 1:CAS:528:DyaL1MXitVegsw%3D%3D
    • Dauber-Osguthorpe, P., et al. (1988). Structure and energetics of ligand binding to proteins: Escherichia coli dihydrofolate reductase-trimethoprim, a drug-receptor system. Proteins, 4(1), 31–47.
    • (1988) Proteins , vol.4 , Issue.1 , pp. 31-47
    • Dauber-Osguthorpe, P.1
  • 20
    • 84897980054 scopus 로고    scopus 로고
    • ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers. Bioinformatics
    • Pierce, B.G. et al. (2014) ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers. Bioinformatics, p.btu097.
    • (2014) p.btu097
    • Pierce, B.G.1
  • 21
    • 4944237207 scopus 로고    scopus 로고
    • The transcriptional regulator AlgR controls cyanide production in Pseudomonas aeruginosa
    • COI: 1:CAS:528:DC%2BD2cXptVKrsbg%3D
    • Carterson, A. J., et al. (2004). The transcriptional regulator AlgR controls cyanide production in Pseudomonas aeruginosa. Journal of Bacteriology, 186(20), 6837–6844.
    • (2004) Journal of Bacteriology , vol.186 , Issue.20 , pp. 6837-6844
    • Carterson, A.J.1
  • 22
    • 21644476468 scopus 로고    scopus 로고
    • PatchDock and SymmDock: servers for rigid and symmetric docking
    • COI: 1:CAS:528:DC%2BD2MXlslyqtbo%3D
    • Schneidman-Duhovny, D., et al. (2005). PatchDock and SymmDock: servers for rigid and symmetric docking. Nucleic Acids Research, 33(SUPPL. 2), W363–W367.
    • (2005) Nucleic Acids Research , vol.33 , pp. W363-W367
    • Schneidman-Duhovny, D.1
  • 23
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
    • COI: 1:CAS:528:DyaL2cXkslegtQ%3D%3D
    • Kabsch, W., & Sander, C. (1983). Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22(12), 2577–2637.
    • (1983) Biopolymers , vol.22 , Issue.12 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.