Draft genome sequence of gerbil-adapted carcinogenic Helicobacter pylori strain 7.13

Genome Announcements

Volumn 3, Issue 3, 2015, Pages

  Asim, Mohammad ^a   Chikara, Surendra K ^d   Ghosh, Arpita ^d   Vudathala, Srinivas ^d   Romero Gallo, Judith ^a   Krishna, Uma S ^a   Wilson, Keith T ^a,b,c   Israel, Dawn A ^a   Peek, Richard M ^a,b   Chaturvedi, Rupesh ^e  

^a VANDERBILT UNIVERSITY MEDICAL CENTER   (United States)

^b VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c VETERANS AFFAIRS MEDICAL CENTER   (United States)

^d Xcelris Labs Ltd   (India)

^e JAWAHARLAL NEHRU UNIVERSITY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85008440053     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00641-15     Document Type: Article

References (6)

1. Wroblewski LE, Peek RM, Jr, Wilson KT. 2010. Helicobacter pylori and gastric cancer: factors that modulate disease risk. Clin Microbiol Rev 23: 713-739. http://dx.doi.org/10.1128/CMR.00011-10.
2. Franco AT, Israel DA, Washington MK, Krishna U, Fox JG, Rogers AB, Neish AS, Collier-Hyams L, Perez-Perez GI, Hatakeyama M, Whitehead R, Gaus K, O'Brien DP, Romero-Gallo J, Peek RM, Jr. 2005. Activation of beta-catenin by carcinogenic Helicobacter pylori. Proc Natl Acad Sci U S A 102:10646-10651. http://dx.doi.org/10.1073/pnas.0504927102.
3. Chaturvedi R, Asim M, Romero-Gallo J, Barry DP, Hoge S, de Sablet T, Delgado AG, Wroblewski LE, Piazuelo MB, Yan F, Israel DA, Casero RA, Jr, Correa P, Gobert AP, Polk DB, Peek RM, Jr, Wilson KT. 2011. Spermine oxidase mediates the gastric cancer risk associated with Helicobacter pylori CagA. Gastroenterology 141:1696-1708. http://dx.doi.org/10.1053/j.gastro.2011.07.045.
4. Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I. 2009. ABySS: a parallel assembler for short read sequence data. Genome Res 19: 1117-1123. http://dx.doi.org/10.1101/gr.089532.108.
5. Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114-2120. http://dx.doi.org/10.1093/bioinformatics/btu170.
6. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Zagnitko O, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD. 2008. The RAST server: Rapid Annotations using Subsystems Technology. BMC Genomics 9:75. http://dx.doi.org/10.1186/1471-2164-9-75.