-
1
-
-
84873295637
-
Insights into the resistance and resilience of the soil microbial community
-
Griffiths, B. S. & Philippot, L. Insights into the resistance and resilience of the soil microbial community. FEMS Microbiology Reviews 37, 112-129, doi: 10.1111/j.1574-6976.2012.00343.x (2013).
-
(2013)
FEMS Microbiology Reviews
, vol.37
, pp. 112-129
-
-
Griffiths, B.S.1
Philippot, L.2
-
2
-
-
77249102566
-
Significant acidification in major Chinese croplands
-
Guo, J. H. et al. Significant acidification in major Chinese croplands. Science 327, 1008-1010, doi: 10.1126/science.1182570 (2010).
-
(2010)
Science
, vol.327
, pp. 1008-1010
-
-
Guo, J.H.1
-
3
-
-
34047154066
-
Distribution of polycyclic aromatic hydrocarbons in thirty typical soil profiles in the Yangtze River Delta region, east China
-
Ping, L. F., Luo, Y. M., Zhang, H. B., Li, Q. B. & Wu, L. H. Distribution of polycyclic aromatic hydrocarbons in thirty typical soil profiles in the Yangtze River Delta region, east China. Environmental Pollution 147, 358-365, doi: 10.1016/j.envpol.2006.05.027 (2007).
-
(2007)
Environmental Pollution
, vol.147
, pp. 358-365
-
-
Ping, L.F.1
Luo, Y.M.2
Zhang, H.B.3
Li, Q.B.4
Wu, L.H.5
-
4
-
-
67651247607
-
Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
-
Lauber, C. L., Hamady, M., Knight, R. & Fierer, N. Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Applied and Environmental Microbiology 75, 5111-5120, doi: 10.1128/aem.00335-09 (2009).
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 5111-5120
-
-
Lauber, C.L.1
Hamady, M.2
Knight, R.3
Fierer, N.4
-
5
-
-
85027945371
-
Spatial scale drives patterns in soil bacterial diversity
-
O'Brien, S. L. et al. Spatial scale drives patterns in soil bacterial diversity. Environmental Microbiology 18, 2039-2051, doi: 10.1111/1462-2920.13231 (2016).
-
(2016)
Environmental Microbiology
, vol.18
, pp. 2039-2051
-
-
O'Brien, S.L.1
-
6
-
-
84869883091
-
Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain
-
Shen, C. et al. Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain. Soil Biology and Biochemistry 57, 204-211, doi: 10.1016/j.soilbio.2012.07.013 (2013).
-
(2013)
Soil Biology and Biochemistry
, vol.57
, pp. 204-211
-
-
Shen, C.1
-
7
-
-
31444447130
-
The diversity and biogeography of soil bacterial communities
-
Fierer, N. & Jackson, R. B. The diversity and biogeography of soil bacterial communities. Proc. Natl. Acad. Sci. USA 103, 626-631, doi: 10.1073/pnas.0507535103 (2006).
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 626-631
-
-
Fierer, N.1
Jackson, R.B.2
-
8
-
-
78349260124
-
Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes
-
Chu, H. et al. Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes. Environmental Microbiology 12, 2998-3006, doi: 10.1111/j.1462-2920.2010.02277.x (2010).
-
(2010)
Environmental Microbiology
, vol.12
, pp. 2998-3006
-
-
Chu, H.1
-
9
-
-
63349105158
-
A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses
-
Jones, R. T. et al. A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. ISME J 3, 442-453, doi: 10.1038/ismej.2008.127 (2009).
-
(2009)
ISME J
, vol.3
, pp. 442-453
-
-
Jones, R.T.1
-
10
-
-
77956996314
-
Soil bacterial and fungal communities across a pH gradient in an arable soil
-
Rousk, J. et al. Soil bacterial and fungal communities across a pH gradient in an arable soil. ISME J 4, 1340-1351, doi: 10.1038/ismej.2010.58 (2010).
-
(2010)
ISME J
, vol.4
, pp. 1340-1351
-
-
Rousk, J.1
-
11
-
-
84895072762
-
Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm
-
Bartram, A. K. et al. Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm. FEMS Microbiology Ecology 87, 403-415, doi: 10.1111/1574-6941.12231 (2014).
-
(2014)
FEMS Microbiology Ecology
, vol.87
, pp. 403-415
-
-
Bartram, A.K.1
-
12
-
-
34548442075
-
Global patterns of polycyclic aromatic hydrocarbons (PAHs) in soil
-
Wilcke, W. Global patterns of polycyclic aromatic hydrocarbons (PAHs) in soil. Geoderma 141, 157-166, doi: 10.1016/j. geoderma.2007.07.007 (2007).
-
(2007)
Geoderma
, vol.141
, pp. 157-166
-
-
Wilcke, W.1
-
13
-
-
6944247410
-
Occurrence and phylogenetic diversity of Sphingomonas strains in soils contaminated with polycyclic aromatic hydrocarbons
-
Leys, N. M. E. J. et al. Occurrence and phylogenetic diversity of Sphingomonas strains in soils contaminated with polycyclic aromatic hydrocarbons. Applied and Environmental Microbiology 70, 1944-1955, doi: 10.1128/aem.70.4.1944-1955.2004 (2004).
-
(2004)
Applied and Environmental Microbiology
, vol.70
, pp. 1944-1955
-
-
Leys, N.M.E.J.1
-
14
-
-
84907080130
-
Effects of polycyclic aromatic hydrocarbons on microbial community structure and PAH ring hydroxylating dioxygenase gene abundance in soil
-
Sawulski, P., Clipson, N. & Doyle, E. Effects of polycyclic aromatic hydrocarbons on microbial community structure and PAH ring hydroxylating dioxygenase gene abundance in soil. Biodegradation 25, 835-847, doi: 10.1007/s10532-014-9703-4 (2014).
-
(2014)
Biodegradation
, vol.25
, pp. 835-847
-
-
Sawulski, P.1
Clipson, N.2
Doyle, E.3
-
15
-
-
84927513194
-
Evident bacterial community changes but only slight degradation when polluted with pyrene in a red soil
-
Ren, G., Ren, W., Teng, Y. & Li, Z. Evident bacterial community changes but only slight degradation when polluted with pyrene in a red soil. Frontiers in Microbiology 6, 22, doi: 10.3389/fmicb.2015.00022 (2015).
-
(2015)
Frontiers in Microbiology
, vol.6
, pp. 22
-
-
Ren, G.1
Ren, W.2
Teng, Y.3
Li, Z.4
-
16
-
-
84962086570
-
Long-term oil contamination alters the molecular ecological networks of soil microbial functional genes
-
Liang, Y. et al. Long-term oil contamination alters the molecular ecological networks of soil microbial functional genes. Frontiers in Microbiology 7, doi: 10.3389/fmicb.2016.00060 (2016).
-
(2016)
Frontiers in Microbiology
, vol.7
-
-
Liang, Y.1
-
17
-
-
84955708232
-
Enrichment of functional microbes and genes during pyrene degradation in two different soils
-
Chen, S., Peng, J. & Duan, G. Enrichment of functional microbes and genes during pyrene degradation in two different soils. Journal of Soils and Sediments 16, 417-426, doi: 10.1007/s11368-015-1204-5 (2016).
-
(2016)
Journal of Soils and Sediments
, vol.16
, pp. 417-426
-
-
Chen, S.1
Peng, J.2
Duan, G.3
-
18
-
-
0034666852
-
Aging, bioavailability, and overestimation of risk from environmental pollutants
-
Alexander, M. Aging, bioavailability, and overestimation of risk from environmental pollutants. Environmental Science & Technology 34, 4259-4265, doi: 10.1021/es001069+ (2000).
-
(2000)
Environmental Science & Technology
, vol.34
, pp. 4259-4265
-
-
Alexander, M.1
-
19
-
-
84960366218
-
Effects of pH and polycyclic aromatic hydrocarbon pollution on thaumarchaeotal community in agricultural soils
-
Wu, Y. et al. Effects of pH and polycyclic aromatic hydrocarbon pollution on thaumarchaeotal community in agricultural soils. Journal of Soils and Sediments 1-10, doi: 10.1007/s11368-016-1390-9 (2016).
-
(2016)
Journal of Soils and Sediments
, pp. 1-10
-
-
Wu, Y.1
-
20
-
-
0026616083
-
A comparative assessment of factors which influence microbial biomass carbon and nitrogen levels in soil
-
Wardle, D. A. A comparative assessment of factors which influence microbial biomass carbon and nitrogen levels in soil. Biological Reviews 67, 321-358, doi: 10.1111/j.1469-185X.1992.tb00728.x (1992).
-
(1992)
Biological Reviews
, vol.67
, pp. 321-358
-
-
Wardle, D.A.1
-
21
-
-
42249095068
-
Real-Time PCR quantification of PAH-ring hydroxylating dioxygenase (PAH-RHDα ) genes from Gram positive and Gram negative bacteria in soil and sediment samples
-
Cébron, A., Norini, M.-P., Beguiristain, T. & Leyval, C. Real-Time PCR quantification of PAH-ring hydroxylating dioxygenase (PAH-RHDα ) genes from Gram positive and Gram negative bacteria in soil and sediment samples. Journal of Microbiological Methods 73, 148-159, doi: 10.1016/j.mimet.2008.01.009 (2008).
-
(2008)
Journal of Microbiological Methods
, vol.73
, pp. 148-159
-
-
CéBron, A.1
Norini, M.-P.2
Beguiristain, T.3
Leyval, C.4
-
22
-
-
79958257334
-
Comparison of the specificities and efficacies of primers for aromatic dioxygenase gene analysis of environmental samples
-
Iwai, S., Johnson, T. A., Chai, B., Hashsham, S. A. & Tiedje, J. M. Comparison of the specificities and efficacies of primers for aromatic dioxygenase gene analysis of environmental samples. Appl. Environ. Microbiol. 77, 3551-3557, doi: 10.1128/aem.00331-11 (2011).
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 3551-3557
-
-
Iwai, S.1
Johnson, T.A.2
Chai, B.3
Hashsham, S.A.4
Tiedje, J.M.5
-
23
-
-
79951597132
-
Pyrene biodegradation in an industrial soil exposed to simulated rhizodeposition: How does it affect functional microbial abundance?
-
Meng, L. & Zhu, Y.-G. Pyrene biodegradation in an industrial soil exposed to simulated rhizodeposition: how does it affect functional microbial abundance? Environmental Science & Technology 45, 1579-1585, doi: 10.1021/es102995c (2011).
-
(2011)
Environmental Science & Technology
, vol.45
, pp. 1579-1585
-
-
Meng, L.1
Zhu, Y.-G.2
-
24
-
-
84864080561
-
Pig manure vermicompost (PMVC) can improve phytoremediation of Cd and PAHs co-contaminated soil by Sedum alfredii
-
Wang, K. et al. Pig manure vermicompost (PMVC) can improve phytoremediation of Cd and PAHs co-contaminated soil by Sedum alfredii. Journal of Soils and Sediments 12, 1089-1099, doi: 10.1007/s11368-012-0539-4 (2012).
-
(2012)
Journal of Soils and Sediments
, vol.12
, pp. 1089-1099
-
-
Wang, K.1
-
25
-
-
84958012353
-
Mapping the centimeter-scale spatial variability of PAHs and microbial populations in the rhizosphere of two plants
-
Bourceret, A., Leyval, C., de Fouquet, C. & Cébron, A. Mapping the centimeter-scale spatial variability of PAHs and microbial populations in the rhizosphere of two plants. PLoS ONE 10, e0142851, doi: 10.1371/journal.pone.0142851 (2015).
-
(2015)
PLoS ONE
, vol.10
, pp. e0142851
-
-
Bourceret, A.1
Leyval, C.2
De Fouquet, C.3
CéBron, A.4
-
26
-
-
84962156847
-
Short-term rhizosphere effect on available carbon sources, phenanthrene Degradation, and active microbiome in an aged-contaminated industrial soil
-
Thomas, F. & Cébron, A. Short-term rhizosphere effect on available carbon sources, phenanthrene Degradation, and active microbiome in an aged-contaminated industrial soil. Frontiers in Microbiology 7, 92, doi: 10.3389/fmicb.2016.00092 (2016).
-
(2016)
Frontiers in Microbiology
, vol.7
, pp. 92
-
-
Thomas, F.1
CéBron, A.2
-
27
-
-
84865739463
-
Comparative metatranscriptomics reveals widespread community responses during phenanthrene degradation in soil
-
de Menezes, A., Clipson, N. & Doyle, E. Comparative metatranscriptomics reveals widespread community responses during phenanthrene degradation in soil. Environmental Microbiology 14, 2577-2588, doi: 10.1111/j.1462-2920.2012.02781.x (2012).
-
(2012)
Environmental Microbiology
, vol.14
, pp. 2577-2588
-
-
De Menezes, A.1
Clipson, N.2
Doyle, E.3
-
28
-
-
77958191947
-
Dynamic changes in functional gene copy numbers and microbial communities during degradation of pyrene in soils
-
Peng, J.-J., Cai, C., Qiao, M., Li, H. & Zhu, Y.-G. Dynamic changes in functional gene copy numbers and microbial communities during degradation of pyrene in soils. Environmental Pollution 158, 2872-2879, doi: 10.1016/j.envpol.2010.06.020 (2010).
-
(2010)
Environmental Pollution
, vol.158
, pp. 2872-2879
-
-
Peng, J.-J.1
Cai, C.2
Qiao, M.3
Li, H.4
Zhu, Y.-G.5
-
29
-
-
0036965906
-
Cooxidation of naphthalene and other polycyclic aromatic hydrocarbons by the nitrifying bacterium. Nitrosomonas europaea
-
Chang, S., Hyman, M. & Williamson, K. Cooxidation of naphthalene and other polycyclic aromatic hydrocarbons by the nitrifying bacterium. Nitrosomonas europaea. Biodegradation 13, 373-381, doi: 10.1023/A:1022811430030 (2002).
-
(2002)
Biodegradation
, vol.13
, pp. 373-381
-
-
Chang, S.1
Hyman, M.2
Williamson, K.3
-
30
-
-
0036591678
-
Soil ecotoxicity of polycyclic aromatic hydrocarbons in relation to soil sorption, lipophilicity, and water solubility
-
Sverdrup, L. E., Nielsen, T. & Krogh, P. H. Soil ecotoxicity of polycyclic aromatic hydrocarbons in relation to soil sorption, lipophilicity, and water solubility. Environmental Science & Technology 36, 2429-2435, doi: 10.1021/es010180s (2002).
-
(2002)
Environmental Science & Technology
, vol.36
, pp. 2429-2435
-
-
Sverdrup, L.E.1
Nielsen, T.2
Krogh, P.H.3
-
31
-
-
84955258337
-
Diversity and distribution patterns of acidobacterial communities in the black soil zone of northeast China
-
Liu, J. et al. Diversity and distribution patterns of acidobacterial communities in the black soil zone of northeast China. Soil Biology and Biochemistry 95, 212-222, doi: 10.1016/j.soilbio.2015.12.021 (2016).
-
(2016)
Soil Biology and Biochemistry
, vol.95
, pp. 212-222
-
-
Liu, J.1
-
32
-
-
0026080952
-
Acidobacterium capsulatum gen. Nov., sp. Nov.: An acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment
-
Kishimoto, N., Kosako, Y. & Tano, T. Acidobacterium capsulatum gen. nov., sp. nov.: An acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment. Current Microbiology 22, 1-7, doi: 10.1007/bf02106205 (1991).
-
(1991)
Current Microbiology
, vol.22
, pp. 1-7
-
-
Kishimoto, N.1
Kosako, Y.2
Tano, T.3
-
33
-
-
84857097221
-
Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site
-
Green, S. J. et al. Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site. Applied and Environmental Microbiology 78, 1039-1047, doi: 10.1128/aem.06435-11 (2012).
-
(2012)
Applied and Environmental Microbiology
, vol.78
, pp. 1039-1047
-
-
Green, S.J.1
-
34
-
-
0036951676
-
Rhodanobacter sp. Strain BPC1 in a benzo[a]pyrene-mineralizing bacterial consortium
-
Kanaly, R. A., Harayama, S. & Watanabe, K. Rhodanobacter sp. strain BPC1 in a benzo[a]pyrene-mineralizing bacterial consortium. Applied and Environmental Microbiology 68, 5826-5833, doi: 10.1128/aem.68.12.5826-5833.2002 (2002).
-
(2002)
Applied and Environmental Microbiology
, vol.68
, pp. 5826-5833
-
-
Kanaly, R.A.1
Harayama, S.2
Watanabe, K.3
-
35
-
-
78650036647
-
Denitrification at pH 4 by a soil-derived Rhodanobacter-dominated community
-
Van Den Heuvel, R. N., Van Der Biezen, E., Jetten, M. S. M., Hefting, M. M. & Kartal, B. Denitrification at pH 4 by a soil-derived Rhodanobacter-dominated community. Environmental Microbiology 12, 3264-3271, doi: 10.1111/j.1462-2920.2010.02301.x (2010).
-
(2010)
Environmental Microbiology
, vol.12
, pp. 3264-3271
-
-
Van Den Heuvel, R.N.1
Van Der Biezen, E.2
Jetten, M.S.M.3
Hefting, M.M.4
Kartal, B.5
-
36
-
-
0035899884
-
Metabolism of anthracene by a Rhodococcus species
-
Dean-Ross, D., Moody, J. D., Freeman, J. P., Doerge, D. R. & Cerniglia, C. E. Metabolism of anthracene by a Rhodococcus species. FEMS Microbiology Letters 204, 205-211, doi: 10.1016/S0378-1097(01)00404-9 (2001).
-
(2001)
FEMS Microbiology Letters
, vol.204
, pp. 205-211
-
-
Dean-Ross, D.1
Moody, J.D.2
Freeman, J.P.3
Doerge, D.R.4
Cerniglia, C.E.5
-
37
-
-
84927511769
-
Profiling bacterial diversity in a limestone cave of the western Loess Plateau of China
-
Wu, Y. et al. Profiling bacterial diversity in a limestone cave of the western Loess Plateau of China. Frontiers in Microbiology 6, 244, doi: 10.3389/fmicb.2015.00244 (2015).
-
(2015)
Frontiers in Microbiology
, vol.6
, pp. 244
-
-
Wu, Y.1
-
38
-
-
84922717914
-
The contrasting responses of soil microorganisms in two rice cultivars to elevated ground-level ozone
-
Feng, Y. et al. The contrasting responses of soil microorganisms in two rice cultivars to elevated ground-level ozone. Environmental Pollution 197, 195-202, doi: 10.1016/j.envpol.2014.11.032 (2015).
-
(2015)
Environmental Pollution
, vol.197
, pp. 195-202
-
-
Feng, Y.1
-
39
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nature methods 7, 335-336, doi: 10.1038/nmeth.f.303 (2010).
-
(2010)
Nature Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
-
40
-
-
84962519464
-
Bacterial community dissimilarity between the surface and subsurface soils equals horizontal differences over several kilometers in the western Tibetan Plateau
-
Chu, H. et al. Bacterial community dissimilarity between the surface and subsurface soils equals horizontal differences over several kilometers in the western Tibetan Plateau. Environmental Microbiology 18, 1523-1533, doi: 10.1111/1462-2920.13236 (2016).
-
(2016)
Environmental Microbiology
, vol.18
, pp. 1523-1533
-
-
Chu, H.1
|