-
1
-
-
85008405162
-
-
Online Mendelian Inheritance in Man, OMIM. Baltimore, MD
-
McKusick-Nathans Institute of Genetic Medicine JHU. Online Mendelian Inheritance in Man, OMIM. Baltimore, MD. 1998. http://www.omim.org/. 2015.
-
(1998)
-
-
-
2
-
-
84898958693
-
Orphanet: an online database of rare diseases and orphan drugs
-
Paris, France
-
INSERM-Orphanet. Orphanet: an online database of rare diseases and orphan drugs. Paris, France. 1997. http://www.orpha.net/. 2015.
-
(1997)
-
-
-
3
-
-
84961371413
-
Lean Big Data integration in systems biology and systems pharmacology
-
Ma'ayan A, Rouillard AD, Clark NR, Wang Z, Duan Q, Kou Y. Lean Big Data integration in systems biology and systems pharmacology. Trends Pharmacol Sci. 2014;35(9):450-60. doi:10.1016/j.tips.2014.07.001.
-
(2014)
Trends Pharmacol Sci.
, vol.35
, Issue.9
, pp. 450-460
-
-
Ma'ayan, A.1
Rouillard, A.D.2
Clark, N.R.3
Wang, Z.4
Duan, Q.5
Kou, Y.6
-
4
-
-
77951973818
-
Modeling sample variables with an Experimental Factor Ontology
-
Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, et al. Modeling sample variables with an Experimental Factor Ontology. Bioinformatics. 2010;26(8):1112-8. doi:10.1093/bioinformatics/btq099.
-
(2010)
Bioinformatics.
, vol.26
, Issue.8
, pp. 1112-1118
-
-
Malone, J.1
Holloway, E.2
Adamusiak, T.3
Kapushesky, M.4
Zheng, J.5
Kolesnikov, N.6
-
5
-
-
85008321080
-
ORDO: An Ontology Connecting Rare Disease, Epidemiology and Genetic Data
-
Vasant D, Chanas L, Malone J, Hanauer M, Olry A, Jupp S, et al. ORDO: An Ontology Connecting Rare Disease, Epidemiology and Genetic Data. 2014.
-
(2014)
-
-
Vasant, D.1
Chanas, L.2
Malone, J.3
Hanauer, M.4
Olry, A.5
Jupp, S.6
-
6
-
-
84876560358
-
The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013
-
Database issue
-
Hastings J, de Matos P, Dekker A, Ennis M, Harsha B, Kale N, et al. The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013. Nucleic Acids Res. 2013;41(Database issue):D456-63. doi:10.1093/nar/gks1146.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D456-D463
-
-
Hastings, J.1
de Matos, P.2
Dekker, A.3
Ennis, M.4
Harsha, B.5
Kale, N.6
-
7
-
-
0034069495
-
Gene ontology: tool for the unification of biology
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet. 2000;25(1):25-9. doi:10.1038/75556.
-
(2000)
The Gene Ontology Consortium. Nat Genet.
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
-
8
-
-
84909599499
-
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon
-
Haendel MA, Balhoff JP, Bastian FB, Blackburn DC, Blake JA, Bradford Y, et al. Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. J Biomed Semantics. 2014;5:21. doi:10.1186/2041-1480-5-21.
-
(2014)
J Biomed Semantics.
, vol.5
, pp. 21
-
-
Haendel, M.A.1
Balhoff, J.P.2
Bastian, F.B.3
Blackburn, D.C.4
Blake, J.A.5
Bradford, Y.6
-
9
-
-
80052699329
-
MIREOT: The minimum information to reference an external ontology term
-
Courtot M, Gibson F, Lister A, Malone J, Schober D, Brinkman R, et al. MIREOT: The minimum information to reference an external ontology term. 2009.
-
(2009)
-
-
Courtot, M.1
Gibson, F.2
Lister, A.3
Malone, J.4
Schober, D.5
Brinkman, R.6
-
10
-
-
84902319909
-
CLO: The cell line ontology
-
Sarntivijai S, Lin Y, Xiang Z, Meehan TF, Diehl AD, Vempati UD, et al. CLO: The cell line ontology. J Biomed Semantics. 2014;5:37. doi:10.1186/2041- 1480-5-37.
-
(2014)
J Biomed Semantics.
, vol.5
, pp. 37
-
-
Sarntivijai, S.1
Lin, Y.2
Xiang, Z.3
Meehan, T.F.4
Diehl, A.D.5
Vempati, U.D.6
-
11
-
-
85008328374
-
Collaborative Ontology Development Using Webulous
-
Dublin, Ireland: Bioontologies SIG
-
Jupp S, Welter D, Burdett T, Parkinson H, Malone J. Collaborative Ontology Development Using Webulous. Dublin, Ireland: Bioontologies SIG; 2015.
-
(2015)
-
-
Jupp, S.1
Welter, D.2
Burdett, T.3
Parkinson, H.4
Malone, J.5
-
12
-
-
84899523552
-
The EBI RDF platform: linked open data for the life sciences
-
Jupp S, Malone J, Bolleman J, Brandizi M, Davies M, Garcia L, et al. The EBI RDF platform: linked open data for the life sciences. Bioinformatics. 2014;30(9):1338-9.
-
(2014)
Bioinformatics.
, vol.30
, Issue.9
, pp. 1338-1339
-
-
Jupp, S.1
Malone, J.2
Bolleman, J.3
Brandizi, M.4
Davies, M.5
Garcia, L.6
-
13
-
-
77949622215
-
Function, role, and disposition in basic formal ontology
-
Arp R, Smith B. Function, role, and disposition in basic formal ontology. Nat Precedings. 2008;1941(1):1-4.
-
(2008)
Nat Precedings.
, vol.1941
, Issue.1
, pp. 1-4
-
-
Arp, R.1
Smith, B.2
-
14
-
-
77949622215
-
Function, role, and disposition in basic formal ontology
-
Arp R, Smith B. Function, role, and disposition in basic formal ontology. Nature. 2008;2:1-4.
-
(2008)
Nature.
, vol.2
, pp. 1-4
-
-
Arp, R.1
Smith, B.2
-
15
-
-
84946081339
-
OMIM.org: Online Mendelian Inheritance in Man (OMIM(R)), an online catalog of human genes and genetic disorders
-
Database issue
-
Amberger JS, Bocchini CA, Schiettecatte F, Scott AF, Hamosh A. OMIM.org: Online Mendelian Inheritance in Man (OMIM(R)), an online catalog of human genes and genetic disorders. Nucleic Acids Res. 2015;43(Database issue):D789-98. doi:10.1093/nar/gku1205.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D789-D798
-
-
Amberger, J.S.1
Bocchini, C.A.2
Schiettecatte, F.3
Scott, A.F.4
Hamosh, A.5
-
17
-
-
84941103725
-
Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data
-
Database issue
-
Kibbe WA, Arze C, Felix V, Mitraka E, Bolton E, Fu G, et al. Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data. Nucleic Acids Res. 2015;43(Database issue):D1071-8. doi:10.1093/nar/gku1011.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D1071-D1078
-
-
Kibbe, W.A.1
Arze, C.2
Felix, V.3
Mitraka, E.4
Bolton, E.5
Fu, G.6
-
18
-
-
0032991290
-
The medical dictionary for regulatory activities (MedDRA)
-
Brown EG, Wood L, Wood S. The medical dictionary for regulatory activities (MedDRA). Drug Saf. 1999;20(2):109-17.
-
(1999)
Drug Saf.
, vol.20
, Issue.2
, pp. 109-117
-
-
Brown, E.G.1
Wood, L.2
Wood, S.3
-
19
-
-
84992372121
-
DIAB: An Ontology of Type 2 Diabetes Stages and Associated Phenotypes
-
Vasant D, Neff F, Gormanns P, Conte N, Fritsche A, Staiger H, et al. DIAB: An Ontology of Type 2 Diabetes Stages and Associated Phenotypes. 2015.
-
(2015)
-
-
Vasant, D.1
Neff, F.2
Gormanns, P.3
Conte, N.4
Fritsche, A.5
Staiger, H.6
-
20
-
-
84941063628
-
Europe PMC: a full-text literature database for the life sciences and platform for innovation
-
Database issue
-
Europe PMCC. Europe PMC: a full-text literature database for the life sciences and platform for innovation. Nucleic Acids Res. 2015;43(Database issue):D1042-8. doi:10.1093/nar/gku1061.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D1042-D1048
-
-
Europe, P.M.C.C.1
-
21
-
-
38349118307
-
Text processing through Web services: calling Whatizit
-
Rebholz-Schuhmann D, Arregui M, Gaudan S, Kirsch H, Jimeno A. Text processing through Web services: calling Whatizit. Bioinformatics. 2008;24(2):296-8. doi:10.1093/bioinformatics/btm557.
-
(2008)
Bioinformatics.
, vol.24
, Issue.2
, pp. 296-298
-
-
Rebholz-Schuhmann, D.1
Arregui, M.2
Gaudan, S.3
Kirsch, H.4
Jimeno, A.5
-
22
-
-
84937523757
-
The human phenotype ontology: semantic unification of common and rare disease
-
Groza T, Kohler S, Moldenhauer D, Vasilevsky N, Baynam G, Zemojtel T, et al. The human phenotype ontology: semantic unification of common and rare disease. Am J Hum Genet. 2015;97(1):111-24. doi:10.1016/j.ajhg.2015.05.020.
-
(2015)
Am J Hum Genet.
, vol.97
, Issue.1
, pp. 111-124
-
-
Groza, T.1
Kohler, S.2
Moldenhauer, D.3
Vasilevsky, N.4
Baynam, G.5
Zemojtel, T.6
-
23
-
-
78249235739
-
The mammalian phenotype ontology: enabling robust annotation and comparative analysis
-
Smith CL, Eppig JT. The mammalian phenotype ontology: enabling robust annotation and comparative analysis. Wiley Interdiscip Rev Syst Biol Med. 2009;1(3):390-9.
-
(2009)
Wiley Interdiscip Rev Syst Biol Med.
, vol.1
, Issue.3
, pp. 390-399
-
-
Smith, C.L.1
Eppig, J.T.2
-
24
-
-
0033927616
-
Medical subject headings (MeSH)
-
Lipscomb CE. Medical subject headings (MeSH). Bull Med Libr Assoc. 2000;88(3):265.
-
(2000)
Bull Med Libr Assoc.
, vol.88
, Issue.3
, pp. 265
-
-
Lipscomb, C.E.1
-
25
-
-
84876527890
-
DbVar and DGVa: public archives for genomic structural variation
-
Database issue
-
Lappalainen I, Lopez J, Skipper L, Hefferon T, Spalding JD, Garner J, et al. DbVar and DGVa: public archives for genomic structural variation. Nucleic Acids Res. 2013;41(Database issue):D936-41. doi:10.1093/nar/gks1213.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D936-D941
-
-
Lappalainen, I.1
Lopez, J.2
Skipper, L.3
Hefferon, T.4
Spalding, J.D.5
Garner, J.6
-
26
-
-
15544381567
-
Overview and utilization of the NCI thesaurus
-
Fragoso G, de Coronado S, Haber M, Hartel F, Wright L. Overview and utilization of the NCI thesaurus. Comp Funct Genomics. 2004;5(8):648-54. doi:10.1002/cfg.445.
-
(2004)
Comp Funct Genomics.
, vol.5
, Issue.8
, pp. 648-654
-
-
Fragoso, G.1
de Coronado, S.2
Haber, M.3
Hartel, F.4
Wright, L.5
-
27
-
-
85008399197
-
-
Oslo, Norway: WHO Collaborating Centre for Drug Statistics Methodology, Guidelines for ATC classification and DDD assignment 2013
-
Organization WH. Anatomical therapeutic chemical (ATC) classification with defined daily doses (DDDs). Oslo, Norway: WHO Collaborating Centre for Drug Statistics Methodology, Guidelines for ATC classification and DDD assignment 2013; 2012.
-
(2012)
-
-
-
28
-
-
0345863927
-
The unified medical language system (UMLS): integrating biomedical terminology
-
Bodenreider O. The unified medical language system (UMLS): integrating biomedical terminology. Nucleic Acids Res. 2004;32 suppl 1:D267-D70.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. D267-D270
-
-
Bodenreider, O.1
-
29
-
-
84941063628
-
Europe PMC: a full-text literature database for the life sciences and platform for innovation
-
Jan, Epub 2014 Nov 6.
-
Consortium EP. Europe PMC: a full-text literature database for the life sciences and platform for innovation. Nucleic Acids Res. 2015 Jan; 43(Database issue):D1042-8. doi: 10.1093/nar/gku1061. Epub 2014 Nov 6.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D1042-D1048
-
-
-
30
-
-
85008399190
-
Expressing time-dependent relations through temporal qualifications
-
Grewe N, Hastings J, Jansen L, Ruttenberg A, Mungall C, Schulz S. Expressing time-dependent relations through temporal qualifications. http://bfo.googlecode.com/svn-history/r418/trunk/docs/TQC/TQC-current.pdf.
-
-
-
Grewe, N.1
Hastings, J.2
Jansen, L.3
Ruttenberg, A.4
Mungall, C.5
Schulz, S.6
-
31
-
-
85008399192
-
Patterns for representing time-dependent information in OWL 2 ontologies
-
Ruttenberg A, Hastings J, Grewe N, Neuhaus F, Mungall C, Jansen L, et al. Patterns for representing time-dependent information in OWL 2 ontologies. http://bfo.googlecode.com/svn-history/r496/trunk/docs/OWL-TIME/bfo-owltime. pdf.
-
-
-
Ruttenberg, A.1
Hastings, J.2
Grewe, N.3
Neuhaus, F.4
Mungall, C.5
Jansen, L.6
-
32
-
-
56249087275
-
Reducing false positives by combining abstract interpretation and bounded model checking. Proceeding ASE '08 Proceedings of the 2008 23rd IEEE/ACM International Conference on Automated Software Engineering
-
Washington, DC, USA: IEEE Computer Society
-
Post H, Sinz C, Kaiser A, Gorges T, editors. Reducing false positives by combining abstract interpretation and bounded model checking. Proceeding ASE '08 Proceedings of the 2008 23rd IEEE/ACM International Conference on Automated Software Engineering. Washington, DC, USA: IEEE Computer Society; 2008. p.188-197.
-
(2008)
, pp. 188-197
-
-
Post, H.1
Sinz, C.2
Kaiser, A.3
Gorges, T.4
-
33
-
-
84867449920
-
Microattribution and nanopublication as means to incentivize the placement of human genome variation data into the public domain
-
Patrinos GP, Cooper DN, van Mulligen E, Gkantouna V, Tzimas G, Tatum Z, et al. Microattribution and nanopublication as means to incentivize the placement of human genome variation data into the public domain. Hum Mutat. 2012;33(11):1503-12. doi:10.1002/humu.22144.
-
(2012)
Hum Mutat.
, vol.33
, Issue.11
, pp. 1503-1512
-
-
Patrinos, G.P.1
Cooper, D.N.2
van Mulligen, E.3
Gkantouna, V.4
Tzimas, G.5
Tatum, Z.6
-
34
-
-
84987680729
-
Standardized description of scientific evidence using the Evidence Ontology (ECO)
-
Chibucos MC, Mungall CJ, Balakrishnan R, Christie KR, Huntley RP, White O, et al. Standardized description of scientific evidence using the Evidence Ontology (ECO). Database (Oxford). 2014;2014. doi:10.1093/database/bau075.
-
(2014)
Database (Oxford).
, vol.2014
-
-
Chibucos, M.C.1
Mungall, C.J.2
Balakrishnan, R.3
Christie, K.R.4
Huntley, R.P.5
White, O.6
-
35
-
-
58349094755
-
Dermatologic manifestations of colonic disorders
-
Lester LU, Rapini RP. Dermatologic manifestations of colonic disorders. Curr Opin Gastroenterol. 2009;25(1):66-73.
-
(2009)
Curr Opin Gastroenterol.
, vol.25
, Issue.1
, pp. 66-73
-
-
Lester, L.U.1
Rapini, R.P.2
-
36
-
-
0034880893
-
[Association of psoriasis and congenital lamellar ichthyosis]
-
Stepanova A, Zschau H, Kuster W. [Association of psoriasis and congenital lamellar ichthyosis]. Hautarzt. 2001;52(8):722-5.
-
(2001)
Hautarzt.
, vol.52
, Issue.8
, pp. 722-725
-
-
Stepanova, A.1
Zschau, H.2
Kuster, W.3
-
37
-
-
0035180309
-
Use of general-purpose negation detection to augment concept indexing of medical documents: a quantitative study using the UMLS
-
Mutalik PG, Deshpande A, Nadkarni PM. Use of general-purpose negation detection to augment concept indexing of medical documents: a quantitative study using the UMLS. J Am Med Inform Assoc. 2001;8(6):598-609.
-
(2001)
J Am Med Inform Assoc.
, vol.8
, Issue.6
, pp. 598-609
-
-
Mutalik, P.G.1
Deshpande, A.2
Nadkarni, P.M.3
-
38
-
-
84971246378
-
Microtask crowdsourcing for disease mention annotation in PubMed abstracts
-
Good BM, Nanis M, Wu C, Su AI. Microtask crowdsourcing for disease mention annotation in PubMed abstracts. Pac Symp Biocomput. 2015:282-93.
-
(2015)
Pac Symp Biocomput
, pp. 282-293
-
-
Good, B.M.1
Nanis, M.2
Wu, C.3
Su, A.I.4
-
39
-
-
84922785021
-
What's in a Genotype: An Ontological Characterization for Integration of Genetic Variation Data
-
CEUR-WS: Title of host publication ICBO 2013 - Proceedings of the 4th International Conference on Biomedical Ontology
-
Brush MH, Mungall C, Washington NL, Haendel M, editors. What's in a Genotype?: An Ontological Characterization for Integration of Genetic Variation Data. CEUR-WS: Title of host publication ICBO 2013 - Proceedings of the 4th International Conference on Biomedical Ontology; 2013. p.105-108.
-
(2013)
, pp. 105-108
-
-
Brush, M.H.1
Mungall, C.2
Washington, N.L.3
Haendel, M.4
|