-
1
-
-
84871875751
-
What limits the evolutionary emergence of pathogens?
-
Gandon S, Hochberg ME, Holt RD, Day T, What limits the evolutionary emergence of pathogens?Philos Trans R Soc B Biol Sci. 2013;368: 20120086.
-
(2013)
Philos Trans R Soc B Biol Sci
, vol.368
, pp. 20120086
-
-
Gandon, S.1
Hochberg, M.E.2
Holt, R.D.3
Day, T.4
-
2
-
-
11244307326
-
The Evolutionary Ecology of Novel Plant-Pathogen Interactions
-
Parker IM, Gilbert GS, The Evolutionary Ecology of Novel Plant-Pathogen Interactions. Annu Rev Ecol Evol Syst. 2004;35: 675–700.
-
(2004)
Annu Rev Ecol Evol Syst
, vol.35
, pp. 675-700
-
-
Parker, I.M.1
Gilbert, G.S.2
-
3
-
-
81755163022
-
West Nile Virus Experimental Evolution in vivo and the Trade-off Hypothesis
-
22102808,.;:
-
Deardorff ER, Fitzpatrick KA, Jerzak GVS, Shi P-Y, Kramer LD, Ebel GD, West Nile Virus Experimental Evolution in vivo and the Trade-off Hypothesis. PLoS Pathog. 2011;7: e1002335. doi: 10.1371/journal.ppat.100233522102808
-
(2011)
PLoS Pathog
, vol.7
, pp. e1002335
-
-
Deardorff, E.R.1
Fitzpatrick, K.A.2
Jerzak, G.V.S.3
Shi, P.-Y.4
Kramer, L.D.5
Ebel, G.D.6
-
4
-
-
84862843329
-
Multihost Experimental Evolution of a Plant RNA Virus Reveals Local Adaptation and Host-Specific Mutations
-
22319146,.;:
-
Bedhomme S, Lafforgue G, Elena SF, Multihost Experimental Evolution of a Plant RNA Virus Reveals Local Adaptation and Host-Specific Mutations. Mol Biol Evol. 2012;29: 1481–1492. doi: 10.1093/molbev/msr31422319146
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1481-1492
-
-
Bedhomme, S.1
Lafforgue, G.2
Elena, S.F.3
-
5
-
-
84894292648
-
Host immune responses accelerate pathogen evolution
-
24304673,.;:
-
Trivedi P, Wang N, Host immune responses accelerate pathogen evolution. ISME J. 2014;8: 727–731. doi: 10.1038/ismej.2013.21524304673
-
(2014)
ISME J
, vol.8
, pp. 727-731
-
-
Trivedi, P.1
Wang, N.2
-
6
-
-
84910617617
-
Multihost Experimental Evolution of the Pathogen Ralstonia solanacearum Unveils Genes Involved in Adaptation to Plants
-
25086002,..;:
-
Guidot A, Jiang W, Ferdy J-B, Thébaud C, Barberis P, Gouzy J, et al. Multihost Experimental Evolution of the Pathogen Ralstonia solanacearum Unveils Genes Involved in Adaptation to Plants. Mol Biol Evol. 2014;31: 2913–2928. doi: 10.1093/molbev/msu22925086002
-
(2014)
Mol Biol Evol
, vol.31
, pp. 2913-2928
-
-
Guidot, A.1
Jiang, W.2
Ferdy, J.-B.3
Thébaud, C.4
Barberis, P.5
Gouzy, J.6
-
7
-
-
84863551304
-
Top 10 plant pathogenic bacteria in molecular plant pathology
-
22672649,..;:
-
Mansfield J, Genin S, Magori S, Citovsky V, Sriariyanum M, Ronald P, et al. Top 10 plant pathogenic bacteria in molecular plant pathology. Mol Plant Pathol. 2012;13: 614–629. doi: 10.1111/j.1364-3703.2012.00804.x22672649
-
(2012)
Mol Plant Pathol
, vol.13
, pp. 614-629
-
-
Mansfield, J.1
Genin, S.2
Magori, S.3
Citovsky, V.4
Sriariyanum, M.5
Ronald, P.6
-
8
-
-
84881264308
-
Ralstonia solanacearum, a widespread bacterial plant pathogen in the post-genomic era
-
23718203,.;:
-
Peeters N, Guidot A, Vailleau F, Valls M, Ralstonia solanacearum, a widespread bacterial plant pathogen in the post-genomic era. Mol Plant Pathol. 2013;14: 651–662. doi: 10.1111/mpp.1203823718203
-
(2013)
Mol Plant Pathol
, vol.14
, pp. 651-662
-
-
Peeters, N.1
Guidot, A.2
Vailleau, F.3
Valls, M.4
-
9
-
-
0001744175
-
Genetic Evidence that Extracellular Polysaccharide Is a Virulence Factor of Pseudomonas solanacearum
-
Denny TP, Genetic Evidence that Extracellular Polysaccharide Is a Virulence Factor of Pseudomonas solanacearum. Mol Plant Microbe Interact. 1991;4: 198.
-
(1991)
Mol Plant Microbe Interact
, vol.4
, pp. 198
-
-
Denny, T.P.1
-
10
-
-
0033729641
-
Control of virulence and pathogenicity genes of Ralstonia solanacearum by an elaborate sensory network
-
11701844,.;:
-
Schell MA, Control of virulence and pathogenicity genes of Ralstonia solanacearum by an elaborate sensory network. Annu Rev Phytopathol. 2000;38: 263–292. doi: 10.1146/annurev.phyto.38.1.26311701844
-
(2000)
Annu Rev Phytopathol
, vol.38
, pp. 263-292
-
-
Schell, M.A.1
-
11
-
-
84868331743
-
Pathogenomics of the Ralstonia solanacearum species complex
-
22559068,.;:
-
Genin S, Denny TP, Pathogenomics of the Ralstonia solanacearum species complex. Annu Rev Phytopathol. 2012;50: 67–89. doi: 10.1146/annurev-phyto-081211-17300022559068
-
(2012)
Annu Rev Phytopathol
, vol.50
, pp. 67-89
-
-
Genin, S.1
Denny, T.P.2
-
12
-
-
84992755822
-
A Resource Allocation Trade-Off between Virulence and Proliferation Drives Metabolic Versatility in the Plant Pathogen Ralstonia solanacearum
-
27732672,.;:
-
Peyraud R, Cottret L, Marmiesse L, Gouzy J, Genin S, A Resource Allocation Trade-Off between Virulence and Proliferation Drives Metabolic Versatility in the Plant Pathogen Ralstonia solanacearum. PLOS Pathog. 2016;12: e1005939. doi: 10.1371/journal.ppat.100593927732672
-
(2016)
PLOS Pathog
, vol.12
, pp. e1005939
-
-
Peyraud, R.1
Cottret, L.2
Marmiesse, L.3
Gouzy, J.4
Genin, S.5
-
13
-
-
0037203829
-
Genome sequence of the plant pathogen Ralstonia solanacearum
-
11823852,..;:
-
Salanoubat M, Genin S, Artiguenave F, Gouzy J, Mangenot S, Arlat M, et al. Genome sequence of the plant pathogen Ralstonia solanacearum. Nature. 2002;415: 497–502. doi: 10.1038/415497a11823852
-
(2002)
Nature
, vol.415
, pp. 497-502
-
-
Salanoubat, M.1
Genin, S.2
Artiguenave, F.3
Gouzy, J.4
Mangenot, S.5
Arlat, M.6
-
14
-
-
16344391376
-
Control of the Ralstonia solanacearum Type III secretion system (Hrp) genes by the global virulence regulator PhcA
-
15811321,.;:
-
Genin S, Brito B, Denny TP, Boucher C, Control of the Ralstonia solanacearum Type III secretion system (Hrp) genes by the global virulence regulator PhcA. FEBS Lett. 2005;579: 2077–2081. doi: 10.1016/j.febslet.2005.02.05815811321
-
(2005)
FEBS Lett
, vol.579
, pp. 2077-2081
-
-
Genin, S.1
Brito, B.2
Denny, T.P.3
Boucher, C.4
-
15
-
-
0035215819
-
Twitching motility of Ralstonia solanacearum requires a type IV pilus system
-
Liu H, Kang Y, Genin S, Schell MA, Denny TP, Twitching motility of Ralstonia solanacearum requires a type IV pilus system. Microbiol Read Engl. 2001;147: 3215–3229.
-
(2001)
Microbiol Read Engl
, vol.147
, pp. 3215-3229
-
-
Liu, H.1
Kang, Y.2
Genin, S.3
Schell, M.A.4
Denny, T.P.5
-
16
-
-
2442423110
-
Swimming motility, a virulence trait of Ralstonia solanacearum, is regulated by FlhDC and the plant host environment
-
15195951,.;:
-
Tans-Kersten J, Brown D, Allen C, Swimming motility, a virulence trait of Ralstonia solanacearum, is regulated by FlhDC and the plant host environment. Mol Plant-Microbe Interact MPMI. 2004;17: 686–695. doi: 10.1094/MPMI.2004.17.6.68615195951
-
(2004)
Mol Plant-Microbe Interact MPMI
, vol.17
, pp. 686-695
-
-
Tans-Kersten, J.1
Brown, D.2
Allen, C.3
-
17
-
-
0028946254
-
A complex network regulates expression of eps and other virulence genes of Pseudomonas solanacearum
-
7868600,.;:
-
Huang J, Carney BF, Denny TP, Weissinger AK, Schell MA, A complex network regulates expression of eps and other virulence genes of Pseudomonas solanacearum. J Bacteriol. 1995;177: 1259–1267. 7868600
-
(1995)
J Bacteriol
, vol.177
, pp. 1259-1267
-
-
Huang, J.1
Carney, B.F.2
Denny, T.P.3
Weissinger, A.K.4
Schell, M.A.5
-
18
-
-
84859899271
-
New insights into bacterial adaptation through in vivo and in silico experimental evolution
-
22450379,.;:
-
Hindré T, Knibbe C, Beslon G, Schneider D, New insights into bacterial adaptation through in vivo and in silico experimental evolution. Nat Rev Microbiol. 2012;10: 352–365. doi: 10.1038/nrmicro275022450379
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 352-365
-
-
Hindré, T.1
Knibbe, C.2
Beslon, G.3
Schneider, D.4
-
19
-
-
84890255321
-
Novel plant inputs influencing Ralstonia solanacearum during infection
-
24312090,.;:
-
Zuluaga AP, Puigvert M, Valls M, Novel plant inputs influencing Ralstonia solanacearum during infection. Front Microbiol. 2013;4: 349-. doi: 10.3389/fmicb.2013.0034924312090
-
(2013)
Front Microbiol
, vol.4
, pp. 349
-
-
Zuluaga, A.P.1
Puigvert, M.2
Valls, M.3
-
20
-
-
84880787194
-
Bacterial Adaptation through Loss of Function
-
23874220,.;:
-
Hottes AK, Freddolino PL, Khare A, Donnell ZN, Liu JC, Tavazoie S, Bacterial Adaptation through Loss of Function. PLOS Genet. 2013;9: e1003617. doi: 10.1371/journal.pgen.100361723874220
-
(2013)
PLOS Genet
, vol.9
, pp. e1003617
-
-
Hottes, A.K.1
Freddolino, P.L.2
Khare, A.3
Donnell, Z.N.4
Liu, J.C.5
Tavazoie, S.6
-
21
-
-
77955316177
-
Gene functionality’s influence on the second codon: A large-scale survey of second codon composition in three domains
-
20417269,.;:
-
Tang S-L, Chang BCH, Halgamuge SK, Gene functionality’s influence on the second codon: A large-scale survey of second codon composition in three domains. Genomics. 2010;96: 92–101. doi: 10.1016/j.ygeno.2010.04.00120417269
-
(2010)
Genomics
, vol.96
, pp. 92-101
-
-
Tang, S.-L.1
Chang, B.C.H.2
Halgamuge, S.K.3
-
22
-
-
0027320126
-
Phenotype conversion in Pseudomonas solanacearum due to spontaneous inactivation of PhcA, a putative LysR transcriptional regulator
-
8366033,.;:
-
Brumbley SM, Carney BF, Denny TP, Phenotype conversion in Pseudomonas solanacearum due to spontaneous inactivation of PhcA, a putative LysR transcriptional regulator. J Bacteriol. 1993;175: 5477–5487. 8366033
-
(1993)
J Bacteriol
, vol.175
, pp. 5477-5487
-
-
Brumbley, S.M.1
Carney, B.F.2
Denny, T.P.3
-
23
-
-
75749142680
-
PrhG, a transcriptional regulator responding to growth conditions, is involved in the control of the type III secretion system regulon in Ralstonia solanacearum
-
20008073,.;:
-
Plener L, Manfredi P, Valls M, Genin S, PrhG, a transcriptional regulator responding to growth conditions, is involved in the control of the type III secretion system regulon in Ralstonia solanacearum. J Bacteriol. 2010;192: 1011–1019. doi: 10.1128/JB.01189-0920008073
-
(2010)
J Bacteriol
, vol.192
, pp. 1011-1019
-
-
Plener, L.1
Manfredi, P.2
Valls, M.3
Genin, S.4
-
24
-
-
84902578752
-
Multiplex genome editing by natural transformation
-
24889608,.;:
-
Dalia AB, McDonough E, Camilli A, Multiplex genome editing by natural transformation. Proc Natl Acad Sci. 2014;111: 8937–8942. doi: 10.1073/pnas.140647811124889608
-
(2014)
Proc Natl Acad Sci
, vol.111
, pp. 8937-8942
-
-
Dalia, A.B.1
McDonough, E.2
Camilli, A.3
-
25
-
-
84858962010
-
A chromosomal insertion toolbox for promoter probing, mutant complementation, and pathogenicity studies in Ralstonia solanacearum
-
22122329,.;:
-
Monteiro F, Solé M, van Dijk I, Valls M, A chromosomal insertion toolbox for promoter probing, mutant complementation, and pathogenicity studies in Ralstonia solanacearum. Mol Plant-Microbe Interact MPMI. 2012;25: 557–568. doi: 10.1094/MPMI-07-11-020122122329
-
(2012)
Mol Plant-Microbe Interact MPMI
, vol.25
, pp. 557-568
-
-
Monteiro, F.1
Solé, M.2
van Dijk, I.3
Valls, M.4
-
26
-
-
82555176527
-
Detection and functional characterization of a large genomic deletion resulting in decreased pathogenicity in Ralstonia solanacearum race 3 biovar 2 strains
-
22050636,.;:
-
González A, Plener L, Restrepo S, Boucher C, Genin S, Detection and functional characterization of a large genomic deletion resulting in decreased pathogenicity in Ralstonia solanacearum race 3 biovar 2 strains. Environ Microbiol. 2011;13: 3172–3185. doi: 10.1111/j.1462-2920.2011.02636.x22050636
-
(2011)
Environ Microbiol
, vol.13
, pp. 3172-3185
-
-
González, A.1
Plener, L.2
Restrepo, S.3
Boucher, C.4
Genin, S.5
-
27
-
-
84895929966
-
An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing
-
Roux B, Rodde N, Jardinaud M-F, Timmers T, Sauviac L, Cottret L, et al. An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing. Plant J Cell Mol Biol. 2014;77: 817–837.
-
(2014)
Plant J Cell Mol Biol
, vol.77
, pp. 817-837
-
-
Roux, B.1
Rodde, N.2
Jardinaud, M.-F.3
Timmers, T.4
Sauviac, L.5
Cottret, L.6
-
28
-
-
77958471357
-
Differential expression analysis for sequence count data
-
20979621,.;:
-
Anders S, Huber W, Differential expression analysis for sequence count data. Genome Biol. 2010;11: R106. doi: 10.1186/gb-2010-11-10-r10620979621
-
(2010)
Genome Biol
, vol.11
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
29
-
-
85007571147
-
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
-
Benjamini Y, Hochberg Y, Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. J R Stat Soc Ser B Methodol. 1995;57: 289–300.
-
(1995)
J R Stat Soc Ser B Methodol
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
30
-
-
84899518211
-
InterProScan 5: genome-scale protein function classification
-
Jones P, Binns D, Chang H-Y, Fraser M, Li W, McAnulla C, et al. InterProScan 5: genome-scale protein function classification. Bioinforma Oxf Engl. 2014;30: 1236–1240.
-
(2014)
Bioinforma Oxf Engl
, vol.30
, pp. 1236-1240
-
-
Jones, P.1
Binns, D.2
Chang, H.-Y.3
Fraser, M.4
Li, W.5
McAnulla, C.6
-
31
-
-
24044440971
-
BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
-
Maere S, Heymans K, Kuiper M, BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinforma Oxf Engl. 2005;21: 3448–3449.
-
(2005)
Bioinforma Oxf Engl
, vol.21
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
-
32
-
-
77749320898
-
What is flux balance analysis?
-
20212490,.;:
-
Orth JD, Thiele I, Palsson BØ, What is flux balance analysis?Nat Biotechnol. 2010;28: 245–248. doi: 10.1038/nbt.161420212490
-
(2010)
Nat Biotechnol
, vol.28
, pp. 245-248
-
-
Orth, J.D.1
Thiele, I.2
Palsson, B.Ø.3
-
33
-
-
84984994793
-
FlexFlux: combining metabolic flux and regulatory network analyses
-
26666757,.;:
-
Marmiesse L, Peyraud R, Cottret L, FlexFlux: combining metabolic flux and regulatory network analyses. BMC Syst Biol. 2015;9: 93. doi: 10.1186/s12918-015-0238-z26666757
-
(2015)
BMC Syst Biol
, vol.9
, pp. 93
-
-
Marmiesse, L.1
Peyraud, R.2
Cottret, L.3
-
34
-
-
84880221612
-
opm: an R package for analysing OmniLog(R) phenotype microarray data
-
Vaas LAI, Sikorski J, Hofner B, Fiebig A, Buddruhs N, Klenk H-P, et al. opm: an R package for analysing OmniLog(R) phenotype microarray data. Bioinforma Oxf Engl. 2013;29: 1823–1824.
-
(2013)
Bioinforma Oxf Engl
, vol.29
, pp. 1823-1824
-
-
Vaas, L.A.I.1
Sikorski, J.2
Hofner, B.3
Fiebig, A.4
Buddruhs, N.5
Klenk, H.-P.6
-
35
-
-
66149094298
-
Two type III secretion system effectors from Ralstonia solanacearum GMI1000 determine host-range specificity on tobacco
-
19348572,..;:
-
Poueymiro M, Cunnac S, Barberis P, Deslandes L, Peeters N, Cazale-Noel A-C, et al. Two type III secretion system effectors from Ralstonia solanacearum GMI1000 determine host-range specificity on tobacco. Mol Plant-Microbe Interact MPMI. 2009;22: 538–550. doi: 10.1094/MPMI-22-5-053819348572
-
(2009)
Mol Plant-Microbe Interact MPMI
, vol.22
, pp. 538-550
-
-
Poueymiro, M.1
Cunnac, S.2
Barberis, P.3
Deslandes, L.4
Peeters, N.5
Cazale-Noel, A.-C.6
-
36
-
-
84889402962
-
-
Machin D, Cheung YB, Parmar M. Wiley: Survival Analysis: A Practical Approach, 2nd Edition—David Machin, Yin Bun Cheung, Mahesh Parmar [Internet]. 2006 [cited 14 Jul 2016]
-
Machin D, Cheung YB, Parmar M. Wiley: Survival Analysis: A Practical Approach, 2nd Edition—David Machin, Yin Bun Cheung, Mahesh Parmar [Internet]. 2006 [cited 14 Jul 2016]. http://eu.wiley.com/WileyCDA/WileyTitle/productCd-0470870400.html
-
-
-
-
37
-
-
84963811717
-
Functional assignment to positively selected sites in the core type III effector RipG7 from Ralstonia solanacearum
-
26300048,..;:
-
Wang K, Remigi P, Anisimova M, Lonjon F, Kars I, Kajava A, et al. Functional assignment to positively selected sites in the core type III effector RipG7 from Ralstonia solanacearum. Mol Plant Pathol. 2016;17: 553–564. doi: 10.1111/mpp.1230226300048
-
(2016)
Mol Plant Pathol
, vol.17
, pp. 553-564
-
-
Wang, K.1
Remigi, P.2
Anisimova, M.3
Lonjon, F.4
Kars, I.5
Kajava, A.6
-
38
-
-
0037435395
-
Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data
-
12618301,.;:
-
Ramakers C, Ruijter JM, Deprez RHL, Moorman AFM, Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci Lett. 2003;339: 62–66. 12618301
-
(2003)
Neurosci Lett
, vol.339
, pp. 62-66
-
-
Ramakers, C.1
Ruijter, J.M.2
Deprez, R.H.L.3
Moorman, A.F.M.4
-
39
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
12184808,..;:
-
Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002;3: RESEARCH0034. 12184808
-
(2002)
Genome Biol
, vol.3
-
-
Vandesompele, J.1
De Preter, K.2
Pattyn, F.3
Poppe, B.4
Van Roy, N.5
De Paepe, A.6
-
40
-
-
84925156346
-
The I-TASSER Suite: protein structure and function prediction
-
25549265,.;:
-
Yang J, Yan R, Roy A, Xu D, Poisson J, Zhang Y, The I-TASSER Suite: protein structure and function prediction. Nat Methods. 2015;12: 7–8. doi: 10.1038/nmeth.321325549265
-
(2015)
Nat Methods
, vol.12
, pp. 7-8
-
-
Yang, J.1
Yan, R.2
Roy, A.3
Xu, D.4
Poisson, J.5
Zhang, Y.6
|