Modeling the integration of bacterial rRNA fragments into the human cancer genome

BMC Bioinformatics

Volumn 17, Issue 1, 2016, Pages

  Sieber, Karsten B ^a   Gajer, Pawel ^a   Dunning Hotopp, Julie C ^a  

^a UNIVERSITY OF MARYLAND SCHOOL OF MEDICINE   (United States)

Author keywords

Cancer genomics; DNA integration; Genome variation; Host bacteria interactions; Somatic genome

Indexed keywords

BACTERIA; DISEASES; DNA; DNA SEQUENCES; GENES; INTEGRATION; ONCOGENIC VIRUSES; RNA; TRANSCRIPTION;

CANCER GENOMICS; DNA FRAGMENT; GENOME VARIATION; GENOMIC ALTERATIONS; GUANINE NUCLEOTIDES; PROTO-ONCOGENES; SECONDARY STRUCTURES; STOMACH CANCER;

GENE ENCODING;

5' UNTRANSLATED REGION; B LYMPHOCYTE ANTIGEN; CARCINOEMBRYONIC ANTIGEN; CEACAM5 PROTEIN, HUMAN; CEACAM6 PROTEIN, HUMAN; CELL ADHESION MOLECULE; GLYCOSYLPHOSPHATIDYLINOSITOL ANCHORED PROTEIN; HLA ANTIGEN CLASS 2; INVARIANT CHAIN; LEUKOCYTE ANTIGEN; RIBOSOME RNA;

5' UNTRANSLATED REGION; CHEMISTRY; CONFORMATION; GENETIC RECOMBINATION; GENETICS; HOST PARASITE INTERACTION; HUMAN; HUMAN GENOME; METABOLISM; NEOPLASM; PATHOLOGY; PSEUDOMONAS;

5' UNTRANSLATED REGIONS; ANTIGENS, CD; ANTIGENS, DIFFERENTIATION, B-LYMPHOCYTE; CARCINOEMBRYONIC ANTIGEN; CELL ADHESION MOLECULES; GENOME, HUMAN; GPI-LINKED PROTEINS; HISTOCOMPATIBILITY ANTIGENS CLASS II; HOST-PARASITE INTERACTIONS; HUMANS; NEOPLASMS; NUCLEIC ACID CONFORMATION; PSEUDOMONAS; RECOMBINATION, GENETIC; RNA, RIBOSOMAL;

EID: 85007480278     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/s12859-016-0982-0     Document Type: Article

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