SCOPUS 정보 검색 플랫폼

Volumn 3, Issue 2, 2016, Pages

Complete genome sequence of the Opitutaceae bacterium strain TAV5, a potential facultative methylotroph of the wood-feeding termite Reticulitermes flavipes

(13) Kotak, Malini a Isanapong, Jantiya b Goodwin, Lynne c Bruce, David c Chen, Amy d Han, Cliff S c Huntemann, Marcel d Ivanova, Natalia d Land, Miriam L e Nolan, Matt d Pati, Amrita d Woyke, Tanja d Rodrigues, Jorge L M f

a UNIVERSITY OF TEXAS AT ARLINGTON (United States)

b KING MONGKUT'S UNIVERSITY OF TECHNOLOGY NORTH BANGKOK (Thailand)

c LOS ALAMOS NATIONAL LABORATORY (United States)

d DOE JOINT GENOME INSTITUTE (United States)

e OAK RIDGE NATIONAL LABORATORY (United States)

f UNIVERSITY OF CALIFORNIA (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85007440061 PISSN: None EISSN: 21698287 Source Type: Journal
DOI: 10.1128/genomeA.00060-15 Document Type: Article

Times cited : (19)

References (15)

1
- 78649704686
- Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia
- Op den Camp HJ, Islam T, Stott MB, Harhangi HR, Hynes A, Schouten S, Jetten MS, Birkeland NK, Pol A, Dunfield PF. 2009. Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia. Environ Microbiol Rep 1:293-306. http://dx.doi.org/10.1111/j.1758-2229.2009.00022.x.
- (2009) Environ Microbiol Rep , vol.1 , pp. 293-306
- Op den Camp, H.J.¹ Islam, T.² Stott, M.B.³ Harhangi, H.R.⁴ Hynes, A.⁵ Schouten, S.⁶ Jetten, M.S.⁷ Birkeland, N.K.⁸ Pol, A.⁹ Dunfield, P.F.¹⁰

2
- 36849030274
- Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia
- Dunfield PF, Yuryev A, Senin P, Smirnova AV, Stott MB, Hou S, Ly B, Saw JH, Zhou Z, Ren Y, Wang J, Mountain BW, Crowe MA, Weatherby TM, Bodelier PL, Liesack W, Feng L, Wang L, Alam M. 2007. Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature 450:879-882. http://dx.doi.org/10.1038/nature06411.
- (2007) Nature , vol.450 , pp. 879-882
- Dunfield, P.F.¹ Yuryev, A.² Senin, P.³ Smirnova, A.V.⁴ Stott, M.B.⁵ Hou, S.⁶ Ly, B.⁷ Saw, J.H.⁸ Zhou, Z.⁹ Ren, Y.¹⁰ Wang, J.¹¹ Mountain, B.W.¹² Crowe, M.A.¹³ Weatherby, T.M.¹⁴ Bodelier, P.L.¹⁵ Liesack, W.¹⁶ Feng, L.¹⁷ Wang, L.¹⁸ Alam, M.¹⁹

3
- 36949016622
- Methanotrophy below pH 1 by a new Verrucomicrobia species
- Pol A, Heijmans K, Harhangi HR, Tedesco D, Jetten MS, Op den Camp HJ. 2007. Methanotrophy below pH 1 by a new Verrucomicrobia species. Nature 450:874-878. http://dx.doi.org/10.1038/nature06222.
- (2007) Nature , vol.450 , pp. 874-878
- Pol, A.¹ Heijmans, K.² Harhangi, H.R.³ Tedesco, D.⁴ Jetten, M.S.⁵ Op den Camp, H.J.⁶

4
- 38349102157
- Methane oxidation at 55°C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum
- Islam T, Jensen S, Reigstad LJ, Larsen O, Birkeland NK. 2008. Methane oxidation at 55°C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum. Proc Natl Acad Sci U S A 105:300-304. http://dx.doi.org/10.1073/pnas.0704162105.
- (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 300-304
- Islam, T.¹ Jensen, S.² Reigstad, L.J.³ Larsen, O.⁴ Birkeland, N.K.⁵

5
- 4143084055
- New strategies for cultivation and detection of previously uncultured microbes
- Stevenson BS, Eichorst SA, Wertz JT, Schmidt TM, Breznak JA. 2004. New strategies for cultivation and detection of previously uncultured microbes. Appl Environ Microbiol 70:4748-4755. http://dx.doi.org/10.1128/AEM.70.8.4748-4755.2004.
- (2004) Appl Environ Microbiol , vol.70 , pp. 4748-4755
- Stevenson, B.S.¹ Eichorst, S.A.² Wertz, J.T.³ Schmidt, T.M.⁴ Breznak, J.A.⁵

6
- 77952299957
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ. 2010 Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119. http://dx.doi.org/10.1186/1471-2105-11-119.
- (2010) BMC Bioinformatics , vol.11 , pp. 119
- Hyatt, D.¹ Chen, G.L.² Locascio, P.F.³ Land, M.L.⁴ Larimer, F.W.⁵ Hauser, L.J.⁶

7
- 77953023066
- GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
- Pati A, Ivanova NN, Mikhailova N, Ovchinnikova G, Hooper SD, Lykidis A, Kyrpides NC. 2010. GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes. Nat Methods 7:455-457. http://dx.doi.org/10.1038/nmeth.1457.
- (2010) Nat Methods , vol.7 , pp. 455-457
- Pati, A.¹ Ivanova, N.N.² Mikhailova, N.³ Ovchinnikova, G.⁴ Hooper, S.D.⁵ Lykidis, A.⁶ Kyrpides, N.C.⁷

8
- 0030854739
- tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
- Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964. http://dx.doi.org/10.1093/nar/25.5.0955.
- (1997) Nucleic Acids Res , vol.25 , pp. 955-964
- Lowe, T.M.¹ Eddy, S.R.²

9
- 34250665888
- RNAmmer: consistent and rapid annotation of ribosomal RNA genes
- Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 35:3100-3108. http://dx.doi.org/10.1093/nar/gkm160.
- (2007) Nucleic Acids Res , vol.35 , pp. 3100-3108
- Lagesen, K.¹ Hallin, P.² Rødland, E.A.³ Staerfeldt, H.H.⁴ Rognes, T.⁵ Ussery, D.W.⁶

10
- 0037252684
- Rfam: an RNA family database
- Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR. 2003. Rfam: an RNA family database. Nucleic Acids Res 31:439-441. http://dx.doi.org/10.1093/nar/gkg006.
- (2003) Nucleic Acids Res , vol.31 , pp. 439-441
- Griffiths-Jones, S.¹ Bateman, A.² Marshall, M.³ Khanna, A.⁴ Eddy, S.R.⁵

11
- 3042521098
- Improved prediction of signal peptides: SignalP 3.0
- Bendtsen JD, Nielsen H, von Heijne G, Brunak S. 2004. Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340:783-795. http://dx.doi.org/10.1016/j.jmb.2004.05.028.
- (2004) J Mol Biol , vol.340 , pp. 783-795
- Bendtsen, J.D.¹ Nielsen, H.² von Heijne, G.³ Brunak, S.⁴

12
- 84861378555
- High-quality draft genome sequence of the Opitutaceae bacterium strain TAV1, a symbiont of the wood-feeding termite Reticulitermes flavipes
- Isanapong J, Goodwin L, Bruce D, Chen A, Detter C, Han J, Han CS, Held B, Huntemann M, Ivanova N, Land ML, Mavromatis K, Nolan M, Pati A, Pennacchio L, Pitluck S, Szeto E, Tapia R, Woyke T, Rodrigues JL. 2012. High-quality draft genome sequence of the Opitutaceae bacterium strain TAV1, a symbiont of the wood-feeding termite Reticulitermes flavipes. J Bacteriol 194:2744-2745. http://dx.doi.org/10.1128/JB.00264-12.
- (2012) J Bacteriol , vol.194 , pp. 2744-2745
- Isanapong, J.¹ Goodwin, L.² Bruce, D.³ Chen, A.⁴ Detter, C.⁵ Han, J.⁶ Han, C.S.⁷ Held, B.⁸ Huntemann, M.⁹ Ivanova, N.¹⁰ Land, M.L.¹¹ Mavromatis, K.¹² Nolan, M.¹³ Pati, A.¹⁴ Pennacchio, L.¹⁵ Pitluck, S.¹⁶ Szeto, E.¹⁷ Tapia, R.¹⁸ Woyke, T.¹⁹ Rodrigues, J.L.²⁰ more..

13
- 84883199517
- Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium
- Isanapong J, Sealy Hambright W, Willis AG, Boonmee A, Callister SJ, Burnum KE, Paša-Tolić L, Nicora CD, Wertz JT, Schmidt TM, Rodrigues JL. 2013. Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium. ISME J 7:1803-1813. http://dx.doi.org/10.1038/ismej.2013.74.
- (2013) ISME J , vol.7 , pp. 1803-1813
- Isanapong, J.¹ Sealy Hambright, W.² Willis, A.G.³ Boonmee, A.⁴ Callister, S.J.⁵ Burnum, K.E.⁶ Paša-Tolić, L.⁷ Nicora, C.D.⁸ Wertz, J.T.⁹ Schmidt, T.M.¹⁰ Rodrigues, J.L.¹¹

14
- 0029795374
- The β-ketoadipate pathway and the biology of self-identity
- Harwood CS, Parales RE. 1996. The β-ketoadipate pathway and the biology of self-identity. Annu Rev Microbiol 50:553-590. http://dx.doi.org/10.1146/annurev.micro.50.1.553.
- (1996) Annu Rev Microbiol , vol.50 , pp. 553-590
- Harwood, C.S.¹ Parales, R.E.²

15
- 84894028767
- Symbiotic digestion of lignocellulose in termite guts
- Brune A. 2014. Symbiotic digestion of lignocellulose in termite guts. Nat Rev Microbiol 12:168-180. http://dx.doi.org/10.1038/nrmicro3182.
- (2014) Nat Rev Microbiol , vol.12 , pp. 168-180
- Brune, A.¹

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.