Complete genome sequence of a novel bacterium within the family Rhodocyclaceae that degrades polycyclic aromatic hydrocarbons

Genome Announcements

Volumn 3, Issue 2, 2016, Pages

  Singleton, David R ^a   Dickey, Allison N ^b   Scholl, Elizabeth H ^b   Wright, Fred A ^b   Aitken, Michael D ^a  

^a University of North Carolina   (United States)

^b NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85007416093     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00251-15     Document Type: Article

References (8)

1. National Toxicology Program. 2011. Report on carcinogens, twelfth edition, 2011 National Toxicology Program, U.S. Department of Health and Human Services, Washington, DC.
2. U.S. Environmental Protection Agency. 2000. A resource for MGP site characterization and remediation. Expedited site characterization and source remediation at former manufactured gas plant sites. EPA-542-R-00-005 U.S. Environmental Protection Agency, Washington, DC.
3. Singleton DR, Sangaiah R, Gold A, Ball LM, Aitken MD. 2006. Identification and quantification of uncultivated proteobacteria associated with pyrene degradation in a bioreactor treating PAH-contaminated soil. Environ Microbiol 8:1736-1745. http://dx.doi.org/10.1111/j.1462-2920.2006.01112.x.
4. Singleton DR, Hunt M, Powell SN, Frontera-Suau R, Aitken MD. 2007. Stable-isotope probing with multiple growth substrates to determine substrate specificity of uncultivated bacteria. J Microbiol Methods 69:180-187. http://dx.doi.org/10.1016/j.mimet.2006.12.019.
5. Singleton DR, Hu J, Aitken MD. 2012. Heterologous expression of polycyclic aromatic hydrocarbon ring-hydroxylating dioxygenase genes from a novel pyrene-degrading betaproteobacterium. Appl Environ Microbiol 78: 3552-3559. http://dx.doi.org/10.1128/AEM.00173-12.
6. Chin C-S, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J. 2013 Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods 10:563-569. http://dx.doi.org/10.1038/nmeth.2474.
7. Sommer DD, Delcher AL, Salzberg SL, Pop M. 2007. Minimus: a fast, lightweight genome assembler. BMC Bioinformatics 8:64. http://dx.doi.org/10.1186/1471-2105-8-64.
8. Duarte M, Jauregui R, Vilchez-Vargas R, Junca H, Pieper DH. 2014. AromaDeg, a novel database for phylogenomics of aerobic bacterial degradation of aromatics. Database (Oxford) 2014:bau118. http://dx.doi.org/10.1093/database/bau118.