메뉴 건너뛰기




Volumn 69, Issue 1, 2007, Pages 180-187

Stable-isotope probing with multiple growth substrates to determine substrate specificity of uncultivated bacteria

Author keywords

Phenanthrene; Polycyclic aromatic hydrocarbons; Pyrene; Quantitative real time PCR; Stable isotope probing

Indexed keywords

AROMATIC HYDROCARBON; CARBON; DNA; PHENANTHRENE; PYRENE; RIBOSOME RNA; STABLE ISOTOPE;

EID: 33947256177     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2006.12.019     Document Type: Article
Times cited : (43)

References (28)
  • 1
    • 0031737936 scopus 로고    scopus 로고
    • Characteristics of phenanthrene-degrading bacteria isolated from soils contaminated with polycyclic aromatic hydrocarbons
    • Aitken M.D., Stringfellow W.T., Nagel R.D., Kazunga C., and Chen S.-H. Characteristics of phenanthrene-degrading bacteria isolated from soils contaminated with polycyclic aromatic hydrocarbons. Can. J. Microbiol. 44 (1998) 743-752
    • (1998) Can. J. Microbiol. , vol.44 , pp. 743-752
    • Aitken, M.D.1    Stringfellow, W.T.2    Nagel, R.D.3    Kazunga, C.4    Chen, S.-H.5
  • 2
    • 1842362290 scopus 로고
    • Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli
    • Brosius J., Palmer M.L., Kennedy P.J., and Noller H.F. Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc. Nat. Acad. Sci. USA 75 (1978) 4801-4805
    • (1978) Proc. Nat. Acad. Sci. USA , vol.75 , pp. 4801-4805
    • Brosius, J.1    Palmer, M.L.2    Kennedy, P.J.3    Noller, H.F.4
  • 3
    • 0021700508 scopus 로고
    • Microbial metabolism of polycyclic aromatic hydrocarbons
    • Cerniglia C.E. Microbial metabolism of polycyclic aromatic hydrocarbons. Adv. Appl. Microbiol. 30 (1984) 31-71
    • (1984) Adv. Appl. Microbiol. , vol.30 , pp. 31-71
    • Cerniglia, C.E.1
  • 4
    • 33847168352 scopus 로고
    • Biodegradation of polycyclic aromatic hydrocarbons
    • Cerniglia C.E. Biodegradation of polycyclic aromatic hydrocarbons. Biodegradation 3 (1992) 351-368
    • (1992) Biodegradation , vol.3 , pp. 351-368
    • Cerniglia, C.E.1
  • 6
    • 19144372182 scopus 로고    scopus 로고
    • Stable isotope probing - linking microbial identity to function
    • Dumont M.G., and Murrell J.C. Stable isotope probing - linking microbial identity to function. Nat. Rev. Microbiol. 3 (2005) 499-504
    • (2005) Nat. Rev. Microbiol. , vol.3 , pp. 499-504
    • Dumont, M.G.1    Murrell, J.C.2
  • 7
    • 0000757667 scopus 로고
    • Microbial degradation of aromatic hydrocarbons
    • Gibson D.T. (Ed), Marcel Dekker, Inc., New York
    • Gibson D.T., and Venkiteswaran S. Microbial degradation of aromatic hydrocarbons. In: Gibson D.T. (Ed). Microbial Degradation of Organic Compounds (1984), Marcel Dekker, Inc., New York 181-252
    • (1984) Microbial Degradation of Organic Compounds , pp. 181-252
    • Gibson, D.T.1    Venkiteswaran, S.2
  • 10
    • 0029104149 scopus 로고
    • Degradation of a mixture of high-molecular weight polycyclic aromatic hydrocarbons by a Mycobacterium strain PYR-1
    • Kelley I., and Cerniglia C.E. Degradation of a mixture of high-molecular weight polycyclic aromatic hydrocarbons by a Mycobacterium strain PYR-1. J. Soil Contam. 4 (1995) 77-91
    • (1995) J. Soil Contam. , vol.4 , pp. 77-91
    • Kelley, I.1    Cerniglia, C.E.2
  • 11
    • 0037210462 scopus 로고    scopus 로고
    • Kinetics of biodegradation of mixtures of polycyclic aromatic hydrocarbons
    • Lotfabad S.K., and Gray M.R. Kinetics of biodegradation of mixtures of polycyclic aromatic hydrocarbons. Appl. Microbiol. Biotechnol. 60 (2002) 361-366
    • (2002) Appl. Microbiol. Biotechnol. , vol.60 , pp. 361-366
    • Lotfabad, S.K.1    Gray, M.R.2
  • 12
    • 23944499102 scopus 로고    scopus 로고
    • Cultivation-independent in situ molecular analysis of bacteria involved in degradation of pentachlorophenol in soil
    • Mahmood S., Paton G.I., and Prosser J.I. Cultivation-independent in situ molecular analysis of bacteria involved in degradation of pentachlorophenol in soil. Environ. Microbiol. 7 (2005) 1349-1360
    • (2005) Environ. Microbiol. , vol.7 , pp. 1349-1360
    • Mahmood, S.1    Paton, G.I.2    Prosser, J.I.3
  • 13
    • 0036200066 scopus 로고    scopus 로고
    • Identification of the functionally active methanotroph population in a peat soil microcosm by stable-isotope probing
    • Morris S.A., Radajewski S., Willison T.W., and Murrell J.C. Identification of the functionally active methanotroph population in a peat soil microcosm by stable-isotope probing. Appl. Environ. Microbiol. 68 (2002) 1446-1453
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1446-1453
    • Morris, S.A.1    Radajewski, S.2    Willison, T.W.3    Murrell, J.C.4
  • 14
    • 0024374291 scopus 로고
    • Action of a fluoranthene-utilizing bacterial community on polycyclic aromatic hydrocarbon components of creosote
    • Mueller J.G., Chapman P.J., and Pritchard P.H. Action of a fluoranthene-utilizing bacterial community on polycyclic aromatic hydrocarbon components of creosote. Appl. Environ. Microbiol. 55 (1989) 3085-3090
    • (1989) Appl. Environ. Microbiol. , vol.55 , pp. 3085-3090
    • Mueller, J.G.1    Chapman, P.J.2    Pritchard, P.H.3
  • 15
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl M.W. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29 (2001) e45
    • (2001) Nucleic Acids Res. , vol.29
    • Pfaffl, M.W.1
  • 16
    • 0034628432 scopus 로고    scopus 로고
    • Stable-isotope probing as a tool in microbial ecology
    • Radajewski S., Ineson P., Parekh N.R., and Murrell J.C. Stable-isotope probing as a tool in microbial ecology. Nature 403 (2000) 646-649
    • (2000) Nature , vol.403 , pp. 646-649
    • Radajewski, S.1    Ineson, P.2    Parekh, N.R.3    Murrell, J.C.4
  • 18
    • 0033974742 scopus 로고    scopus 로고
    • Selective and sensitive method for PCR amplification of Escherichia coli 16S rRNA genes in soil
    • Sabat G., Rose P., Hickey W.J., and Harkin J.M. Selective and sensitive method for PCR amplification of Escherichia coli 16S rRNA genes in soil. Appl. Environ. Microbiol. 66 (2000) 844-849
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 844-849
    • Sabat, G.1    Rose, P.2    Hickey, W.J.3    Harkin, J.M.4
  • 19
    • 0033492460 scopus 로고    scopus 로고
    • Degradation of phenanthrene by different bacteria: evidence for novel transformation sequences involving the formation of 1-naphthol
    • Samanta S.K., Chakraborti A.K., and Jain R.K. Degradation of phenanthrene by different bacteria: evidence for novel transformation sequences involving the formation of 1-naphthol. Appl. Microbiol. Biotechnol. 53 (1999) 98-107
    • (1999) Appl. Microbiol. Biotechnol. , vol.53 , pp. 98-107
    • Samanta, S.K.1    Chakraborti, A.K.2    Jain, R.K.3
  • 20
    • 15444374754 scopus 로고    scopus 로고
    • Stable-isotope probing of bacteria capable of degrading salicylate, naphthalene, or phenanthrene in a bioreactor treating contaminated soil
    • Singleton D.R., Powell S.N., Sangaiah R., Gold A., Ball L.M., and Aitken M.D. Stable-isotope probing of bacteria capable of degrading salicylate, naphthalene, or phenanthrene in a bioreactor treating contaminated soil. Appl. Environ. Microbiol. 71 (2005) 1202-1209
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 1202-1209
    • Singleton, D.R.1    Powell, S.N.2    Sangaiah, R.3    Gold, A.4    Ball, L.M.5    Aitken, M.D.6
  • 21
    • 33748291406 scopus 로고    scopus 로고
    • Identification and quantification of uncultivated Proteobacteria associated with pyrene degradation in a bioreactor treating PAH-contaminated soil
    • Singleton D.R., Sangaiah R., Gold A., Ball L.M., and Aitken M.D. Identification and quantification of uncultivated Proteobacteria associated with pyrene degradation in a bioreactor treating PAH-contaminated soil. Environ. Microbiol. 10 (2006) 1736-1745
    • (2006) Environ. Microbiol. , vol.10 , pp. 1736-1745
    • Singleton, D.R.1    Sangaiah, R.2    Gold, A.3    Ball, L.M.4    Aitken, M.D.5
  • 22
    • 2342555069 scopus 로고    scopus 로고
    • Development of a real-time PCR method for quantification of the three genera Dehalobacter, Dehalococcoides, and Desulfitobacterium in microbial communities
    • Smits T.H.M., Devenoges C., Szynalski K., Maillard J., and Holliger C. Development of a real-time PCR method for quantification of the three genera Dehalobacter, Dehalococcoides, and Desulfitobacterium in microbial communities. J. Microbiol. Methods 57 (2004) 359-378
    • (2004) J. Microbiol. Methods , vol.57 , pp. 359-378
    • Smits, T.H.M.1    Devenoges, C.2    Szynalski, K.3    Maillard, J.4    Holliger, C.5
  • 23
    • 0028909490 scopus 로고
    • Utilization of solubilized and crystalline mixtures of polycyclic aromatic hydrocarbons by a Mycobacterium sp
    • Tiehm A., and Fritzsche C. Utilization of solubilized and crystalline mixtures of polycyclic aromatic hydrocarbons by a Mycobacterium sp. Appl. Microbiol. Biotechnol. 42 (1995) 964-968
    • (1995) Appl. Microbiol. Biotechnol. , vol.42 , pp. 964-968
    • Tiehm, A.1    Fritzsche, C.2
  • 27
    • 4143101632 scopus 로고    scopus 로고
    • Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis
    • Yu Z., and Morrison M. Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 70 (2004) 4800-4806
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 4800-4806
    • Yu, Z.1    Morrison, M.2
  • 28
    • 0033938063 scopus 로고    scopus 로고
    • Biodegradation of polycyclic aromatic hydrocarbons by a mixed culture
    • Yuan S.Y., Wei S.H., and Chang B.V. Biodegradation of polycyclic aromatic hydrocarbons by a mixed culture. Chemosphere 41 (2000) 1463-1468
    • (2000) Chemosphere , vol.41 , pp. 1463-1468
    • Yuan, S.Y.1    Wei, S.H.2    Chang, B.V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.