Comparative lipidomics of caenorhabditis elegans metabolic disease models by SWATH non-targeted tandem mass spectrometry

Metabolites

Volumn 5, Issue 4, 2015, Pages 677-696

  Prasain, Jeevan K ^a,b   Wilson, Landon ^b   Hoang, Hieu D ^c   Moore, Ray ^b   Miller, Michael A ^c  

^a University of Alabama at Birmingham   (United States)

^b UNIVERSITY OF ALABAMA AT BIRMINGHAM   (United States)

^c UNIVERSITY OF ALABAMA AT BIRMINGHAM   (United States)

Author keywords

Arachidonic acid; Caenorhabditis elegans; Cyclooxygenase; Insulin; Lipidomics; MS MSALL; Prostaglandin; SWATH; Tandem mass spectrometry; Triglycerides

Indexed keywords

CD97 ANTIGEN; DIACYLGLYCEROL; GLYCEROPHOSPHOLIPID; LYSOPHOSPHATIDYLCHOLINE; MONOACYLGLYCEROL; PHOSPHATIDIC ACID; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLINOSITOL; PHOSPHATIDYLSERINE; POLYUNSATURATED FATTY ACID; PROSTAGLANDIN F; TRANSFORMING GROWTH FACTOR BETA; TRIACYLGLYCEROL;

ARTICLE; CAENORHABDITIS ELEGANS; CONTROLLED STUDY; GENE MUTATION; GENOTYPE; LIPID ANALYSIS; LIPID METABOLISM; LIPIDOMICS; MOLECULAR GENETICS; NONHUMAN; PRINCIPAL COMPONENT ANALYSIS; PROSTAGLANDIN SYNTHESIS; SIGNAL TRANSDUCTION; TANDEM MASS SPECTROMETRY;

EID: 85006226110     PISSN: None     EISSN: 22181989     Source Type: Journal    
DOI: 10.3390/metabo5040677     Document Type: Article

References (32)

1. Funk, C.D. Prostaglandins and leukotrienes: Advances in eicosanoid biology. Science 2001, 294, 1871-1875.
2. Simmons, D.L.; Botting, R.M.; Hla, T. Cyclooxygenase isozymes: The biology of prostaglandin synthesis and inhibition. Pharmacol. Rev. 2004, 56, 387-437.
3. Brugger, B. Lipidomics: Analysis of the lipid composition of cells and subcellular organelles by electrospray ionization mass spectrometry. Annu. Rev. Biochem. 2014, 83, 79-98.
4. Schwudke, D.; Schuhmann, K.; Herzog, R.; Bornstein, S.R.; Shevchenko, A. Shotgun lipidomics on high resolution mass spectrometers. Cold Spring Harb Perspect. Biol. 2011, doi:10.1101/cshperspect.a004614.
5. Loizides-Mangold, U. On the future of mass-spectrometry-based lipidomics. FEBS J. 2013, 280, 2817-2829.
6. Law, K.P.; Lim, Y.P. Recent advances in mass spectrometry: Data independent analysis and hyper reaction monitoring. Expert Rev. Proteom. 2013, 10, 551-566.
7. Sajic, T.; Liu, Y.; Aebersold, R. Using data-independent, high resolution mass spectrometry in protein biomarker research: Perspectives and clinical applications. Proteom. Clin. Appl. 2014, 9, 307-321.
8. Papan, C.; Penkov, S.; Herzog, R.; Thiele, C.; Kurzchalia, T.; Shevchenko, A. Systematic screening for novel lipids by shotgun lipidomics. Anal. Chem. 2014, 86, 2703-2710.
9. Schwudke, D.; Oegema, J.; Burton, L.; Entchev, E.; Hannich, J.T.; Ejsing, C.S.; Kurzchalia, T.; Shevchenko, A. Lipid profiling by multiple precursor and neutral loss scanning driven by the data-dependent acquisition. Anal. Chem. 2006, 78, 585-595.
10. Zhu, H.; Han, M. Exploring developmental and physiological functions of fatty acid and lipid variants through worm and fly genetics. Annu. Rev. Genet. 2014, 48, 119-148.
11. Vrablik, T.L.; Watts, J.L. Polyunsaturated fatty acid derived signaling in reproduction and development: Insights from Caenorhabditis elegans and Drosophila melanogaster. Mol. Reprod. Dev. 2013, 80, 244-259.
12. Han, S.M.; Cottee, P.A.; Miller, M.A. Sperm and oocyte communication mechanisms controlling C. elegans fertility. Dev. Dyn. 2010, 239, 1265-1281.
13. Gumienny, T.L.; Savage-Dunn, C. TGF-Beta Signaling in C. elegans. Available online: http://www.wormbook.org/chapters/www_tgfbsignal.2/TGFbetasignal.pdf (accessed on 6 November 2015).
14. Murphy, C.T.; Hu, P.J. Insulin/Insulin-Like Growth Factor Signaling in C. elegans. Available online: http://www.wormbook.org/chapters/www_insulingrowthsignal/insulingrowthsignal.pdf (accessed on 6 November 2015).
15. Edmonds, J.W.; Prasain, J.K.; Dorand, D.; Yang, Y.; Hoang, H.D.; Vibbert, J.; Kubagawa, H.M.; Miller, M.A. Insulin/FOXO signaling regulates ovarian prostaglandins critical for reproduction. Dev. Cell 2010, 19, 858-871.
16. McKnight, K.; Hoang, H.D.; Prasain, J.K.; Brown, N.; Vibbert, J.; Hollister, K.A.; Moore, R.; Ragains, J.R.; Reese, J.; Miller, M.A. Neurosensory perception of environmental cues modulates sperm motility critical for fertilization. Science 2014, 344, 754-757.
17. Perez, C.L.; van Gilst, M.R. A 13C isotope labeling strategy reveals the influence of insulin signaling on lipogenesis in C. elegans. Cell Metab. 2008, 8, 266-274.
18. Ogg, S.; Paradis, S.; Gottlieb, S.; Patterson, G.I.; Lee, L.; Tissenbaum, H.A.; Ruvkun, G. The Fork head transcription factor DAF-16 transduces insulin-like metabolic and longevity signals in C. elegans. Nature 1997, 389, 994-999.
19. Greer, E.R.; Pérez, C.L.; van Gilst, M.R.; Lee, B.H.; Ashrafi, K. Neural and molecular dissection of a C. elegans sensory circuit that regulates fat and feeding. Cell Metab. 2008, 8, 118-131.
20. Hoang, H.D.; Prasain, J.K.; Dorand, D.; Miller, M.A. A heterogeneous mixture of F-series prostaglandins promotes sperm guidance in the Caenorhabditis elegans reproductive tract. PLoS Genet. 2013, 9, e1003271.
21. Kubagawa, H.M.; Watts, J.L.; Corrigan, C.; Edmonds, J.W.; Sztul, E.; Browse, J.; Miller, M.A. Oocyte signals derived from polyunsaturated fatty acids control sperm recruitment in vivo. Nat. Cell Biol. 2006, 8, 1143-1148.
22. Kimura, K.D.; Tissenbaum, H.A.; Liu, Y.; Ruvkun, G. daf-2, an insulin receptor-like gene that regulates longevity and diapause in Caenorhabditis elegans. Science 1997, 277, 942-946.
23. Kniazeva, M.; Crawford, Q.T.; Seiber, M.; Wang, C.Y.; Han, M. Monomethyl branched-chain fatty acids play an essential role in Caenorhabditis elegans development. PLoS Biol. 2004, 2, E257.
24. Entchev, E.V.; Schwudke, D.; Zagoriy, V.; Matyash, V.; Bogdanova, A.; Habermann, B.; Zhu, L.; Shevchenko, A.; Kurzchalia, T.V. LET-767 is required for the production of branched chain and long chain fatty acids in Caenorhabditis elegans. J. Biol. Chem. 2008, 283, 17550-17560.
25. Khaselev, N.; Murphy, R.C. Electrospray ionization mass spectrometry of lysoglycerophosphocholine lipid subclasses. J. Am. Soc. Mass Spectrom. 2000, 11, 283-291.
26. Murphy, R.C.; James, P.F.; McAnoy, A.M.; Krank, J.; Duchoslav, E.; Barkley, R.M. Detection of the abundance of diacylglycerol and triacylglycerol molecular species in cells using neutral loss mass spectrometry. Anal. Biochem. 2007, 366, 59-70.
27. Brugger, B.; Erben, G.; Sandhoff, R.; Wieland, F.T.; Lehmann, W.D. Quantitative analysis of biological membrane lipids at the low picomole level by nano-electrospray ionization tandem mass spectrometry. Proc. Natl. Acad. Sci. USA 1997, 94, 2339-2344.
28. Watts, J.L.; Browse, J. Genetic dissection of polyunsaturated fatty acid synthesis in Caenorhabditis elegans. Proc. Natl. Acad. Sci. USA 2002, 99, 5854-5859.
29. Waaijers, S.; Boxem, M. Engineering the Caenorhabditis elegans genome with CRISPR/Cas9. Methods 2014, 68, 381-388.
30. Lo, T.W.; Pickle, C.S.; Lin, S.; Ralston, E.J.; Gurling, M.; Schartner, C.M.; Bian, Q.; Doudna, J.A.; Meyer, B.J. Precise and heritable genome editing in evolutionarily diverse nematodes using TALENs and CRISPR/Cas9 to engineer insertions and deletions. Genetics 2013, 195, 331-348.
31. Frokjaer-Jensen, C.; Davis, M.W.; Ailion, M.; Jorgensen, E.M. Improved Mos1-mediated transgenesis in C. elegans. Nat. Methods 2012, 9, 117-118.
32. Miller, M.A. University of Alabama at Birmingham, Birmingham, AL, USA. Unpublished work, 2015.