Effects of fragmentation on plant adaptation to urban environments

Philosophical Transactions of the Royal Society B: Biological Sciences

Volumn 372, Issue 1712, 2017, Pages

  Dubois, Jonathan ^a   Cheptou, Pierre Olivier ^a  

^a UNIV MONTPELLIER   (France)

Author keywords

Adaptation; Asteraceae; Crepis sancta; Dispersal; Fragmentation; Urban ecosystems

Indexed keywords

ADAPTATION; ANTHROPOGENIC EFFECT; DISPERSAL; GENETIC MARKER; GENETIC VARIATION; GLOBAL CHANGE; HABITAT FRAGMENTATION; HERB; HIGH TEMPERATURE; LIFE HISTORY TRAIT; NATURAL SELECTION; SPECIES DIVERSITY; URBAN ECOSYSTEM; WEED;

ANIMALIA; ASTERACEAE; CREPIS SANCTA;

MICROSATELLITE DNA;

ADAPTATION; CREPIS; ECOSYSTEM; FRANCE; GENETIC VARIATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; LIFE HISTORY TRAIT; PHYSIOLOGY; PLANT DISPERSAL; REPRODUCTION; URBANIZATION;

ADAPTATION, BIOLOGICAL; CREPIS; ECOSYSTEM; FRANCE; GENETIC VARIATION; LIFE HISTORY TRAITS; MICROSATELLITE REPEATS; PLANT DISPERSAL; REPRODUCTION; URBANIZATION;

EID: 85006043537     PISSN: 09628436     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rstb.2016.0038     Document Type: Article

References (60)

1. Diamond JM. 1989 The present, past and future of human-caused extinctions. Phil. Trans. R. Soc. Lond. B 325, 469-477. (doi:10.1098/rstb.1989.0100)
2. Kinnison MT, Hendry AP. 2001 The pace of modern life II: from rates of contemporary microevolution to pattern and process. Genetica 112, 145-164. (doi:10.1023/A:1013375419520)
3. Reznick DN, Ghalambor CK. 2001 The population ecology of contemporary adaptations: what empirical studies reveal about the conditions that promote adaptive evolution. Genetica 112, 183-198. (doi:10.1023/A:1013352109042)
4. Jump AS, Penuelas J. 2005 Running to stand still: adaptation and the response of plants to rapid climate change. Ecol. Lett. 8, 1010-1020. (doi:10.1111/j.1461-0248.2005.00796.x)
5. Shaw RG, Etterson JR. 2012 Rapid climate change and the rate of adaptation: insight from experimental quantitative genetics. New Phytol. 195, 752-765. (doi:10.1111/j.1469-8137.2012.04230.x)
6. Lancaster LT, Morrison G, Fitt RN. 2017 Life history trade-offs, the intensity of competition, and coexistence in novel and evolving communities under climate change. Phil. Trans. R. Soc. B 372, 20160046. (doi:10.1098/rstb.2016.0046)
7. Escarre J, Lefebvre C, Gruber W, Leblanc M, Lepart J, Riviere Y, Delay B. 2000 Zinc and cadmium hyperaccumulation by Thlaspi caerulescens from metalliferous and nonmetalliferous sites in the Mediterranean area: implications for phytoremediation. New Phytol. 145, 429-437. (doi:10.1046/j.1469-8137.2000.00599.x)
8. Young AG, Clarke GM (eds). 2000 Genetics, demography and viability of fragmented populations. New York, NY: Cambridge University Press.
9. McKinney ML. 2006 Urbanization as a major cause of biotic homogenization. Biol. Conserv. 127, 247-260. (doi:10.1016/j.biocon.2005.09.005)
10. Shochat E, Warren PS, Faeth SH. 2006 Future directions in urban ecology. Trends Ecol. Evol. 21, 661-662. (doi:10.1016/j.tree.2006.09.007)
11. Williams NSG et al. 2009 A conceptual framework for predicting the effects of urban environments on floras. J. Ecol. 97, 4-9. (doi:10.1111/j.1365-2745.2008.01460.x)
12. Brans KI, Govaert L, Engelen JMT, Gianuca AT, Souffreau C, De Meester L. 2017 Eco-evolutionary dynamics in urbanized landscapes: evolution, species sorting and the change in zooplankton body size along urbanization gradients. Phil. Trans. R. Soc. B 372, 20160030. (doi:10.1098/rstb.2016.0030)
13. Arnfield AJ. 2003 Two decades of urban climate research: a review of turbulence, exchanges of energy and water, and the urban heat island. Int. J. Clim. 23, 1-26. (doi:10.1002/joc.859)
14. Slabbekoorn H, Peet M. 2003 Ecology: birds sing at a higher pitch in urban noise—great tits hit the high notes to ensure that their mating calls are heard above the city’s din. Nature 424, 267. (doi:10.1038/424267a)
15. Slabbekoorn H, Yang X-J, Halfwerk W. 2012 Birds and anthropogenic noise: singing higher may matter (A comment on Nemeth and Brumm, ‘Birds and anthropogenic noise: are urban songs adaptive?’). Am. Nat. 180, 142-145. (doi:10.1086/665991)
16. Willi Y, Van Buskirk J, Hoffmann AA. 2006 Limits to the adaptive potential of small populations. Ann. Rev. Ecol. Evol. Syst. 37, 433-458. (doi:10.1146/annurev.ecolsys.37.091305.110145)
17. Cheptou P-O, Hargreaves AL, Bonte D, Jacquemyn H. 2017 Adaptation to fragmentation: evolutionary dynamics driven by human influences. Phil. Trans. R. Soc. B 372, 20160037. (doi:10.1098/rstb.2016.0037)
18. Aguilar R, Ashworth L, Galetto L, Aizen MA. 2006 Plant reproductive susceptibility to habitat fragmentation: review and synthesis through a meta-analysis. Ecol. Lett. 9, 968-980. (doi:10.1111/j.1461-0248.2006.00927.x)
19. Cheptou P-O, Avendano LG. 2006 Pollination processes and the Allee effect in highly fragmented populations: consequences for the mating system in urban environments. New. Phytol. 172, 774-783. (doi:10.1111/j.1469-8137.2006.01880.x)
20. Bonte D et al. 2012 Costs of dispersal. Biol. Rev. 87, 290-312. (doi:10.1111/j.1469-185X.2011.00201.x)
21. Comins HN, Hamilton WD, May RM. 1980 Evolutionary stable dispersal strategies. J. Theor. Biol. 82, 205-230. (doi:10.1016/0022-5193(80)90099-5)
22. Olivieri I, Michalakis Y, Gouyon PH. 1995 Metapopulation genetics and the evolution of dispersal. Am. Nat. 146, 202-228. (doi:10.1086/285795)
23. Ronce O. 2007 How does it feel to be like a rolling stone? Ten questions about dispersal evolution. Ann. Rev. Ecol. Evol. Syst. 38, 231-253. (doi:10.1146/annurev.ecolsys.38.091206.095611)
24. Grime JP. 1977 Evidence for existence of three primary strategies in plants and its relevance to ecological and evolutionary theory. Am. Nat. 111, 1169-1194. (doi:10.1086/283244)
25. Tilman D. 1980 Resources—a graphical-mechanistic approach to competition and predation. Am. Nat. 116, 362-393. (doi:10.1086/283633)
26. Cheptou PO, Carrue O, Rouifed S, Cantarel A. 2008 Rapid evolution of seed dispersal in an urban environment in the weed Crepis sancta. Proc. Natl Acad. Sci. USA 105, 3796-3799. (doi:10.1073/pnas.0708446105)
27. Lande R. 1988 Genetics and demography in biological conservation. Science 241, 1455-1460. (doi:10.1126/science.3420403)
28. Young A, Boyle T, Brown T. 1996 The population genetic consequences of habitat fragmentation for plants. Trends Ecol. Evol. 11, 413-418. (doi:10.1016/0169-5347(96)10045-8)
29. Leinonen T, McCairns RJS, O’Hara RB, Merila J. 2013 QST-FST comparisons: evolutionary and ecological insights from genomic heterogeneity. Nat. Rev. Gen. 14, 179-190. (doi:10.1038/nrg3395)
30. McKay JK, Latta RG. 2002 Adaptive population divergence: markers, QTL and traits. Trends Ecol. Evol. 17, 285-291. (doi:10.1016/S0169-5347(02)02478-3)
31. Merila J, Crnokrak P. 2001 Comparison of genetic differentiation at marker loci and quantitative traits. J. Evol. Biol. 14, 892-903. (doi:10.1046/j.1420-9101.2001.00348.x)
32. Edelaar P, Burraco P, Gomez-Mestre I. 2011 Comparisons between QST and FST—how wrong have we been?. Mol. Ecol. 20, 4830-4839. (doi:10.1111/j.1365-294X.2011.05333.x)
33. Whitlock MC, Gilbert KJ. 2012 QST in a hierarchically structured population. Mol. Ecol. Res. 12, 481-483. (doi:10.1111/j.1755-0998.2012.03122.x)
34. Imbert E. 1999 The effects of achene dimorphism on the dispersal in time and space in Crepis sancta (Asteraceae). Can. J. Bot. 77, 508-513. (doi:10.1139/b99-011)
35. Dornier A, Pons V, Cheptou P-O. 2011 Colonization and extinction dynamics of an annual plant metapopulation in an urban environment. Oikos 120, 1240-1246. (doi:10.1111/j.1600-0706.2010.18959.x)
36. Dornier A, Cheptou P-O. 2012 Determinants of extinction in fragmented plant populations: Crepis sancta (Asteraceae) in urban environments. Oecologia 169, 703-712. (doi:10.1007/s00442-011-2229-0)
37. Cheptou PO, Lepart J, Escarre J. 2002 Mating system variation along a successional gradient in the allogamous and colonizing plant Crepis sancta (Asteraceae). J. Evol. Biol. 15, 753-762. (doi:10.1046/j.1420-9101.2002.00443.x)
38. Cheptou P-O, Dieckmann U. 2002 The evolution of self-fertilization in density-regulated populations. Proc. R. Soc. Lond. B 269, 1177-1186. (doi:10.1098/rspb.2002.1997)
39. Dubois J, Cheptou P-O. 2012 Competition/ colonization syndrome mediated by early germination in non-dispersing achenes in the heteromorphic species Crepis sancta. Ann. Bot. 110, 1245-1251. (doi:10.1093/aob/mcs203)
40. Abramoff MD, Magalhaes PJ, Ram SJ. 2004 Image processing with ImageJ. Image Process. ImageJ. 11, 36-42.
41. Dubois M-P, Dornier A, Jarne P, Cheptou P-O. 2007 Nine polymorphic microsatellite markers in Crepis sancta (Asteraceae). Mol. Ecol. Notes 7, 681-683. (doi:10.1111/j.1471-8286.2006.01676.x)
42. Dempster AP, Laird NM, Rubin DB. 1977 Maximum likelihood from incomplete data via the EM algorithm. J. R. Stat. Soc. B 39, 1-38.
43. Rousset F. 2008 GENEPOP ‘007: a complete re-implementation of the GENEPOP software for Windows and Linux. Mol. Ecol. Res. 8, 103-106. (doi:10.1111/j.1471-8286.2007.01931.x)
44. Goudet J. 2005 HIERFSTAT, a package for R to compute and test hierarchical F-statistics. Mol. Ecol. Notes 5, 184-186. (doi:10.1111/j.1471-8286.2004.00828.x)
45. Rousset F. 2004 Genetic structure and selection in subdivided populations. Princeton, NJ: Princeton University Press.
46. Weir BS, Cockerham CC. 1984 Estimating F-statistics for the analysis of population structure. Evolution 38, 1358-1370. (doi:10.2307/2408641)
47. Chapuis E, Trouve S, Facon B, Degen L, Goudet J. 2007 High quantitative and no molecular differentiation of a freshwater snail (Galba truncatula) between temporary and permanent water habitats. Mol. Ecol. 16, 3484-3496. (doi:10.1111/j.1365-294X.2007.03386.x)
48. Le S, Josse J, Husson F. 2008 FactoMineR: an R 8 package for multivariate analysis. J. Stat. Soft. 25, 1-18. (doi:10.18637/jss.v025.i01)
49. Kirkpatrick M. 2009 Patterns of quantitative genetic variation in multiple dimensions. Genetica 136, 271-284. (doi:10.1007/s10709-008-9302-6)
50. R Core Team. 2012 R: a language environment for statistical computing. Vienna, Austria: R Core Team. 51. Wright S. 1951 The genetical structure of populations. Ann. Eugenics 15, 323-354. (doi:10.1111/j.1469-1809.1949.tb02451.x)
51. Cheptou P-O, Schoen DJ. 2002 The cost of fluctuating inbreeding depression. Evolution 56, 1059-1062. (doi:10.1111/j.0014-3820.2002.tb01416.x)
52. Bates D, Maechler M, Bolker B, Walker S. 2015 Fitting linear mixed-effects models using lme4. J. Stat. Software 67, 1-48. (doi:10.18637/jss.v067.i01)
53. Andrieu E, Dornier A, Rouifed S, Schatz B, Cheptou P-O. 2009 The town Crepis and the country Crepis: how does fragmentation affect a plant-pollinator interaction?. Acta Oecolog. Int. J. Ecol. 35, 1-7. (doi:10.1016/j.actao.2008.07.002)
54. Young HJ, Stanton ML. 1990 Influences of floral variation on pollen removal and seed production in wild radish. Ecology 71, 536-547. (doi:10.2307/1940307)
55. Weber A, Kolb A. 2011 Evolutionary consequences of habitat fragmentation: population size and density affect selection on inflorescence size in a perennial herb. Evol. Ecol. 25, 417-428. (doi:10.1007/s10682-010-9430-1)
56. Franks SJ, Sim S, Weis AE. 2007 Rapid evolution of flowering time by an annual plant in response to a climate fluctuation. Proc. Natl Acad. Sci. USA 104, 1278-1282. (doi:10.1073/pnas.0608379104)
57. Parmesan C, Yohe G. 2003 A globally coherent fingerprint of climate change impacts across natural systems. Nature 421, 37-42. (doi:10.1038/nature01286)
58. Penuelas J, Filella I, Comas P. 2002 Changed plant and animal life cycles from 1952 to 2000 in the Mediterranean region. Glob. Change Biol. 8, 531-544. (doi:10.1046/j.1365-2486.2002.00489.x)
59. Lambrecht SC, Mahieu S, Cheptou P-O. 2016 Natural selection on plant physiological traits in an urban environment. Acta Oecol. 77, 67-74. (doi:10.1016/j.actao.2016.09.002)
60. Harper JL. 1977 Population biology of plants. London, UK: Academic Pressrstb.royalsocietypublishing.orgPhil.Trans.R.Soc.B372:20160038