Comparative genomics analyses revealed two virulent Listeria monocytogenes strains isolated from ready-to-eat food

Gut Pathogens

Volumn 8, Issue 1, 2016, Pages 1-8

  Lim, Shu Yong ^a   Yap, Kien Pong ^a   Thong, Kwai Lin ^a  

^a UNIVERSITY OF MALAYA   (Malaysia)

Author keywords

Comparative genomics; LIPI 1; Listeria monocytogenes; Multidrug resistant; Ready to eat food

Indexed keywords

EID: 85004098422     PISSN: None     EISSN: 17574749     Source Type: Journal    
DOI: 10.1186/s13099-016-0147-8     Document Type: Article

References (40)

1. Lomonaco S, Nucera D, Filipello V. The evolution and epidemiology of Listeria monocytogenes in Europe and the United States. Infect Genet Evol. 2015;35:172-83.
2. Jamali H, Chai LC, Thong KL. Detection and isolation of Listeria spp. and Listeria monocytogenes in ready-to-eat foods with various selective culture media. Food Control. 2013;32:19-24.
3. Marian MN, Sharifah Aminah SM, Zuraini MI, Son R, Maimunah M, Lee HY, et al. MPN-PCR detection and antimicrobial resistance of Listeria monocytogenes isolated from raw and ready-to-eat foods in Malaysia. Food Control. 2012;28:309-14.
4. Gandhi M, Chikindas ML. Listeria: a foodborne pathogen that knows how to survive. Int J Food Microbiol. 2007;113:1-15.
5. McCollum JT, Cronquist AB, Silk BJ, Jackson KA, O'Connor KA, Cosgrove S, et al. Multistate outbreak of listeriosis associated with cantaloupe. N Engl J Med. 2013;369:944-53.
6. Seeliger H, Höhne K. Serotyping of Listeria monocytogenes and related species. Methods Microbiol. 1979;13:31-49.
7. Swaminathan B, Gerner-Smidt P. The epidemiology of human listeriosis. Microbes Infect. 2007;9:1236-43.
8. Vazquez-Boland JA, Dominguez-Bernal G, Gonzalez-Zorn B, Kreft J, Goebel W. Pathogenicity islands and virulence evolution in Listeria. Microbes Infect. 2001;3:571-84.
9. Bierne H, Sabet C, Personnic N, Cossart P. Internalins: a complex family of leucine-rich repeat-containing proteins in Listeria monocytogenes. Microbes Infect. 2007;9:1156-66.
10. Poros-Gluchowska J, Markiewicz Z. Antimicrobial resistance of Listeria monocytogenes. Acta Microbiol Pol. 2003;52:113-29.
11. Jamali H, Thong KL. Genotypic characterization and antimicrobial resistance of Listeria monocytogenes from ready-to-eat foods. Food Control. 2014;44:1-6.
12. Economou V, Gousia P. Agriculture and food animals as a source of antimicrobial-resistant bacteria. Infect Drug Resist. 2015;8:49-61.
13. Yap KP, Ho WS, Gan HM, Chai LC, Thong KL. Global MLST of Salmonella Typhi revisited in post-genomic era: genetic conservation, population structure, and comparative genomics of rare sequence types. Front Microbiol. 2016;7:1-12.
14. Darling ACE, Mau B, Blattner FR, Perna NT. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res. 2004;14:1394-403.
15. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, et al. The RAST server: rapid annotations using subsystems technology. BMC Genom. 2008;9:75.
16. Lagesen K, Hallin P, Rødland EA, Stærfeldt HH, Rognes T, Ussery DW. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 2007;35:3100-8.
17. Laslett D, Canback B. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res. 2004;32:11-6.
18. Zhao Y, Wu J, Yang J, Sun S, Xiao J, Yu JPGAP. Pan-genomes analysis pipeline. Bioinformatics. 2012;28:416-8.
19. Kaas RS, Leekitcharoenphon P, Aarestrup FM, Lund O. Solving the problem of comparing whole bacterial genomes across different sequencing platforms. PLoS ONE. 2014;9:1-8.
20. Chen L, Yang J, Yu J, Yao Z, Sun L, Shen Y, et al. VFDB: a reference database for bacterial virulence factors. Nucleic Acids Res. 2005;33:325-8.
21. McArthur AG, Waglechner N, Nizam F, Yan A, Azad MA, Baylay AJ, et al. The comprehensive antibiotic resistance database. Antimicrob Agents Chemother. 2013;57:3348-57.
22. Glaser P, Frangeul L, Buchrieser C, Rusniok C, Amend A, Baquero F, et al. Comparative genomics of Listeria species. Science. 2001;294:849-52.
23. Mascola L, Lieb L, Fannin SL, Chiu J. Listeriosis: an uncommon opportunistic infection in patients with acquired immunodeficiency syndrome: a report of five cases and a review of the literature. Am J Med. 1988;84:162-4.
24. Wu Y, Zheng J, Wang Y, Li S, Jin H, Li Z, et al. Draft genome sequence of Listeria monocytogenes LM201, isolated from foodstuff. Genome Announc. 2015;3:e01417.
25. Briers Y, Klumpp J, Schuppler M, Loessner MJ. Genome sequence of Listeria monocytogenes Scott A, a clinical isolate from a food-borne listeriosis outbreak. J Bacteriol. 2011;193:4284-5.
26. Dortet L, Mostowy S, Louaka AS, Gouin E, Nahori MA, Wiemer EA, Dussurget O, Cossart P. Recruitment of the major vault protein by InlK: a Listeria monocytogenes strategy to avoid autophagy. PLoS Pathog. 2011;7(8):e1002168.
27. Kirchner M, Higgins DE. Inhibition of ROCK activity allows InlF-mediated invasion and increased virulence of Listeria monocytogenes. Mol Microbiol. 2008;68:749-67.
28. Asano K, Kakizaki I, Nakane A. Interaction of Listeria monocytogenes autolysin amidase with glycosaminoglycans promotes listerial adhesion to mouse hepatocytes. Biochimie. 2012;94:1291-9.
29. Gahan CG, Hill C. Listeria monocytogenes: survival and adaptation in the gastrointestinal tract. Front Cell Infect Microbiol. 2014;4:9.
30. Cotter PD, Ryan S, Gahan CGM, Hill C. Presence of GadD1 glutamate decarboxylase in selected Listeria monocytogenes strains is associated with an ability to grow at low pH. Appl Environ Microbiol. 2005;71:2832-9.
31. Chen J, Cheng C, Xia Y, Zhao H, Fang C, Shan Y, et al. Lmo0036, an ornithine and putrescine carbamoyltransferase in Listeria monocytogenes, participates in arginine deiminase and agmatine deiminase pathways and mediates acid tolerance. Microbiology. 2011;157:3150-61.
32. Cotter PD, O'Reilly K, Hill C. Role of the glutamate decarboxylase acid resistance system in the survival of Listeria monocytogenes LO28 in low pH foods. J Food Prot. 2001;64:1362-8.
33. Collins B, Cotter PD, Hill C, Ross RP. The impact of nisin on sensitive and resistant mutants of Listeria monocytogenes in cottage cheese. J Appl Microbiol. 2011;110:1509-14.
34. Melo J, Andrew PW, Faleiro ML. Listeria monocytogenes in cheese and the dairy environment remains a food safety challenge: the role of stress responses. Food Res Int. 2015;67:75-90.
35. van der Veen S, Hain T, Wouters JA, Hossain H, de Vos WM, Abee T, et al. The heat-shock response of Listeria monocytogenes comprises genes involved in heat shock, cell division, cell wall synthesis, and the SOS response. Microbiology. 2007;153:3593-607.
36. Wong WC, Pui CF, Tunung R, Cheah YK, Nakaguchi Y, Nishibuchi M, et al. Prevalence of Listeria monocytogenes in frozen burger patties in Malaysia. Int Food Res J. 2012;19:1751-6.
37. Sleator RD, Francis GA, O'Beirne D, Gahan CGM, Hill C. Betaine and carnitine uptake systems in Listeria monocytogenes affect growth and survival in foods and during infection. J Appl Microbiol. 2003;95:839-46.
38. Jamali H, Paydar M, Ismail S, Looi CY, Wong WF, Radmehr B, et al. Prevalence, antimicrobial susceptibility and virulotyping of Listeria species and Listeria monocytogenes isolated from open-air fish markets. BMC Microbiol. 2015;15:144.
39. Su X, Zhang J, Shi W, Yang X, Li Y, Pan H, et al. Molecular characterization and antimicrobial susceptibility of Listeria monocytogenes isolated from foods and humans. Food Control. 2016;70:96-102.
40. Hof H. An update on the medical management of listeriosis. Expert Opin Pharmacother. 2004;5:1727-35.