Draft genome sequence of Weissella oryzae SG25T, isolated from fermented rice grains

Genome Announcements

Volumn 2, Issue 4, 2014, Pages

  Tanizawa, Yasuhiro ^a,b   Fujisawa, Takatomo ^b   Mochizuki, Takako ^b   Kaminuma, Eli ^b   Suzuki, Yutaka ^a   Nakamura, Yasukazu ^b   Tohno, Masanori ^c  

^a UNIVERSITY OF TOKYO   (Japan)

^b NATIONAL INSTITUTE OF GENETICS   (Japan)

^c NATIONAL INSTITUTE OF LIVESTOCK AND GRASSLAND SCIENCE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85003441408     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00667-14     Document Type: Article

References (9)

1. Maclean JL, Dawe DC, Hardy B, Hettel GP (ed). 2002. Importance of rice, p 1-8. In Rice almanac: source book for the most important economic activity on earth, 3rd ed. CABI Publishing, Wallingford, United Kingdom.
2. Tohno M, Kitahara M, Inoue H, Uegaki R, Irisawa T, Ohkuma M, Tajima K. 2013. Weissella oryzae sp. nov., isolated from fermented rice grain. Int. J. Syst. Evol. Microbiol. 63:1417-1420. http://dx.doi.org/10.1099/ijs.0.043612-0.
3. Magoč T, Salzberg SL. 2011. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27:2957-2963. http://dx.doi.org/10.1093/bioinformatics/btr507.
4. Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760. http://dx.doi.org/10.1093/bioinformatics/btp324.
5. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829. http://dx.doi.org/10.1101/gr.074492.107.
6. Gao S, Sung W-K, Nagarajan N. 2011. Opera: reconstructing optimal genomic scaffolds with high-throughput paired-end sequences. J. Comput. Biol. 18:1681-1691. http://dx.doi.org/10.1089/cmb.2011.0170.
7. Boetzer M, Pirovano W. 2012. Toward almost closed genomes with Gap-Filler. Genome Biol. 13:R56. http://dx.doi.org/10.1186/gb-2012-13-6-r56.
8. Sugawara H, Ohyama A, Mori H, Kurokawa K. 2009. Microbial genome annotation pipeline (MiGAP) for diverse users, abstr S-001-1-2. 20th Int. Conf. Genome Informatics, Yokohama, Japan.
9. Lucas PM, Blancato VS, Claisse O, Magni C, Lolkema JS, Lonvaud-Funel A. 2007. Agmatine deiminase pathway genes in Lactobacillus brevis are linked to the tyrosine decarboxylation operon in a putative acid resistance locus. Microbiology 153:2221-2230. http://dx.doi.org/10.1099/mic.0.2007/006320-0.