-
1
-
-
84893596081
-
Current and proposed molecular diagnostics in a genitourinary service line laboratory at a tertiary clinical institution
-
Udager, A.M., Alva, A., Mehra, R., Current and proposed molecular diagnostics in a genitourinary service line laboratory at a tertiary clinical institution. Cancer J 20 (2014), 29–42.
-
(2014)
Cancer J
, vol.20
, pp. 29-42
-
-
Udager, A.M.1
Alva, A.2
Mehra, R.3
-
2
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
Birney, E., Stamatoyannopoulos, J.A., Dutta, A., Guigo, R., Gingeras, T.R., Margulies, E.H., Weng, Z., Snyder, M., Dermitzakis, E.T., Thurman, R.E., et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447 (2007), 799–816.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
Guigo, R.4
Gingeras, T.R.5
Margulies, E.H.6
Weng, Z.7
Snyder, M.8
Dermitzakis, E.T.9
Thurman, R.E.10
-
3
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
Kapranov, P., Cheng, J., Dike, S., Nix, D.A., Duttagupta, R., Willingham, A.T., Stadler, P.F., Hertel, J., Hackermuller, J., Hofacker, I.L., et al. RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science 316 (2007), 1484–1488.
-
(2007)
Science
, vol.316
, pp. 1484-1488
-
-
Kapranov, P.1
Cheng, J.2
Dike, S.3
Nix, D.A.4
Duttagupta, R.5
Willingham, A.T.6
Stadler, P.F.7
Hertel, J.8
Hackermuller, J.9
Hofacker, I.L.10
-
4
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
Guttman, M., Amit, I., Garber, M., French, C., Lin, M.F., Feldser, D., Huarte, M., Zuk, O., Carey, B.W., Cassady, J.P., et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 458 (2009), 223–227.
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
Huarte, M.7
Zuk, O.8
Carey, B.W.9
Cassady, J.P.10
-
5
-
-
82155186923
-
The emergence of lncRNAs in cancer biology
-
Prensner, J.R., Chinnaiyan, A.M., The emergence of lncRNAs in cancer biology. Cancer Discov 1 (2011), 391–407.
-
(2011)
Cancer Discov
, vol.1
, pp. 391-407
-
-
Prensner, J.R.1
Chinnaiyan, A.M.2
-
6
-
-
79961202865
-
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression
-
Prensner, J.R., Iyer, M.K., Balbin, O.A., Dhanasekaran, S.M., Cao, Q., Brenner, J.C., Laxman, B., Asangani, I.A., Grasso, C.S., Kominsky, H.D., et al. Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression. Nat Biotechnol 29 (2011), 742–749.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 742-749
-
-
Prensner, J.R.1
Iyer, M.K.2
Balbin, O.A.3
Dhanasekaran, S.M.4
Cao, Q.5
Brenner, J.C.6
Laxman, B.7
Asangani, I.A.8
Grasso, C.S.9
Kominsky, H.D.10
-
7
-
-
84887122461
-
The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex
-
Prensner, J.R., Iyer, M.K., Sahu, A., Asangani, I.A., Cao, Q., Patel, L., Vergara, I.A., Davicioni, E., Erho, N., Ghadessi, M., et al. The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex. Nat Genet 45 (2013), 1392–1398.
-
(2013)
Nat Genet
, vol.45
, pp. 1392-1398
-
-
Prensner, J.R.1
Iyer, M.K.2
Sahu, A.3
Asangani, I.A.4
Cao, Q.5
Patel, L.6
Vergara, I.A.7
Davicioni, E.8
Erho, N.9
Ghadessi, M.10
-
8
-
-
0034095472
-
Rapid (“warm”) autopsy study for procurement of metastatic prostate cancer
-
Rubin, M.A., Putzi, M., Mucci, N., Smith, D.C., Wojno, K., Korenchuk, S., Pienta, K.J., Rapid (“warm”) autopsy study for procurement of metastatic prostate cancer. Clin Cancer Res 6 (2000), 1038–1045.
-
(2000)
Clin Cancer Res
, vol.6
, pp. 1038-1045
-
-
Rubin, M.A.1
Putzi, M.2
Mucci, N.3
Smith, D.C.4
Wojno, K.5
Korenchuk, S.6
Pienta, K.J.7
-
9
-
-
10844235652
-
Androgen-independent prostate cancer is a heterogeneous group of diseases: lessons from a rapid autopsy program
-
Shah, R.B., Mehra, R., Chinnaiyan, A.M., Shen, R., Ghosh, D., Zhou, M., Macvicar, G.R., Varambally, S., Harwood, J., Bismar, T.A., et al. Androgen-independent prostate cancer is a heterogeneous group of diseases: lessons from a rapid autopsy program. Cancer Res 64 (2004), 9209–9216.
-
(2004)
Cancer Res
, vol.64
, pp. 9209-9216
-
-
Shah, R.B.1
Mehra, R.2
Chinnaiyan, A.M.3
Shen, R.4
Ghosh, D.5
Zhou, M.6
Macvicar, G.R.7
Varambally, S.8
Harwood, J.9
Bismar, T.A.10
-
10
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta, R.A., Shah, N., Wang, K.C., Kim, J., Horlings, H.M., Wong, D.J., Tsai, M.C., Hung, T., Argani, P., Rinn, J.L., et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 464 (2010), 1071–1076.
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
Wong, D.J.6
Tsai, M.C.7
Hung, T.8
Argani, P.9
Rinn, J.L.10
-
11
-
-
80054029971
-
Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modification and is associated with poor prognosis in colorectal cancers
-
Kogo, R., Shimamura, T., Mimori, K., Kawahara, K., Imoto, S., Sudo, T., Tanaka, F., Shibata, K., Suzuki, A., Komune, S., et al. Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modification and is associated with poor prognosis in colorectal cancers. Cancer Res 71 (2011), 6320–6326.
-
(2011)
Cancer Res
, vol.71
, pp. 6320-6326
-
-
Kogo, R.1
Shimamura, T.2
Mimori, K.3
Kawahara, K.4
Imoto, S.5
Sudo, T.6
Tanaka, F.7
Shibata, K.8
Suzuki, A.9
Komune, S.10
-
12
-
-
84872825450
-
Long non-coding RNA MALAT-1 overexpression predicts tumor recurrence of hepatocellular carcinoma after liver transplantation
-
Lai, M.C., Yang, Z., Zhou, L., Zhu, Q.Q., Xie, H.Y., Zhang, F., Wu, L.M., Chen, L.M., Zheng, S.S., Long non-coding RNA MALAT-1 overexpression predicts tumor recurrence of hepatocellular carcinoma after liver transplantation. Med Oncol 29 (2012), 1810–1816.
-
(2012)
Med Oncol
, vol.29
, pp. 1810-1816
-
-
Lai, M.C.1
Yang, Z.2
Zhou, L.3
Zhu, Q.Q.4
Xie, H.Y.5
Zhang, F.6
Wu, L.M.7
Chen, L.M.8
Zheng, S.S.9
-
13
-
-
81755161347
-
The long noncoding MALAT-1 RNA indicates a poor prognosis in non-small cell lung cancer and induces migration and tumor growth
-
Schmidt, L.H., Spieker, T., Koschmieder, S., Schaffers, S., Humberg, J., Jungen, D., Bulk, E., Hascher, A., Wittmer, D., Marra, A., et al. The long noncoding MALAT-1 RNA indicates a poor prognosis in non-small cell lung cancer and induces migration and tumor growth. J Thorac Oncol 6 (2011), 1984–1992.
-
(2011)
J Thorac Oncol
, vol.6
, pp. 1984-1992
-
-
Schmidt, L.H.1
Spieker, T.2
Koschmieder, S.3
Schaffers, S.4
Humberg, J.5
Jungen, D.6
Bulk, E.7
Hascher, A.8
Wittmer, D.9
Marra, A.10
-
14
-
-
84876807416
-
Overexpression of long noncoding RNA PCAT-1 is a novel biomarker of poor prognosis in patients with colorectal cancer
-
Ge, X., Chen, Y., Liao, X., Liu, D., Li, F., Ruan, H., Jia, W., Overexpression of long noncoding RNA PCAT-1 is a novel biomarker of poor prognosis in patients with colorectal cancer. Med Oncol, 30, 2013, 588.
-
(2013)
Med Oncol
, vol.30
, pp. 588
-
-
Ge, X.1
Chen, Y.2
Liao, X.3
Liu, D.4
Li, F.5
Ruan, H.6
Jia, W.7
-
15
-
-
84896524997
-
PCAT-1, a long noncoding RNA, regulates BRCA2 and controls homologous recombination in cancer
-
Prensner, J.R., Chen, W., Iyer, M.K., Cao, Q., Ma, T., Han, S., Sahu, A., Malik, R., Wilder-Romans, K., Navone, N., et al. PCAT-1, a long noncoding RNA, regulates BRCA2 and controls homologous recombination in cancer. Cancer Res 74 (2014), 1651–1660.
-
(2014)
Cancer Res
, vol.74
, pp. 1651-1660
-
-
Prensner, J.R.1
Chen, W.2
Iyer, M.K.3
Cao, Q.4
Ma, T.5
Han, S.6
Sahu, A.7
Malik, R.8
Wilder-Romans, K.9
Navone, N.10
-
16
-
-
84861904178
-
Genome regulation by long noncoding RNAs
-
Rinn, J.L., Chang, H.Y., Genome regulation by long noncoding RNAs. Annu Rev Biochem 81 (2012), 145–166.
-
(2012)
Annu Rev Biochem
, vol.81
, pp. 145-166
-
-
Rinn, J.L.1
Chang, H.Y.2
-
17
-
-
84919454313
-
Noncoding RNAs as novel biomarkers in prostate cancer
-
Ronnau, C.G., Verhaegh, G.W., Luna-Velez, M.V., Schalken, J.A., Noncoding RNAs as novel biomarkers in prostate cancer. Biomed Res Int, 2014, 2014, 591703.
-
(2014)
Biomed Res Int
, vol.2014
, pp. 591703
-
-
Ronnau, C.G.1
Verhaegh, G.W.2
Luna-Velez, M.V.3
Schalken, J.A.4
-
18
-
-
79957840356
-
Long noncoding RNAs and human disease
-
Wapinski, O., Chang, H.Y., Long noncoding RNAs and human disease. Trends Cell Biol 21 (2011), 354–361.
-
(2011)
Trends Cell Biol
, vol.21
, pp. 354-361
-
-
Wapinski, O.1
Chang, H.Y.2
-
19
-
-
84905962700
-
The lncRNA PCAT29 inhibits oncogenic phenotypes in prostate cancer
-
Malik, R., Patel, L., Prensner, J.R., Shi, Y., Iyer, M.K., Subramaniyan, S., Carley, A., Niknafs, Y.S., Sahu, A., Han, S., et al. The lncRNA PCAT29 inhibits oncogenic phenotypes in prostate cancer. Mol Cancer Res 12 (2014), 1081–1087.
-
(2014)
Mol Cancer Res
, vol.12
, pp. 1081-1087
-
-
Malik, R.1
Patel, L.2
Prensner, J.R.3
Shi, Y.4
Iyer, M.K.5
Subramaniyan, S.6
Carley, A.7
Niknafs, Y.S.8
Sahu, A.9
Han, S.10
-
20
-
-
84925231126
-
RNA biomarkers associated with metastatic progression in prostate cancer: a multi-institutional high-throughput analysis of SChLAP1
-
Dec.
-
Prensner, J.R., Zhao, S., Erho, N., Schipper, M., Iyer, M.K., Dhanasekaran, S.M., Magi-Galluzzi, C., Mehra, R., Sahu, A., Siddiqui, J., Davicioni, E., Den, R.B., Dicker, A.P., Karnes, R.J., Wei, J.T., Klein, E.A., Jenkins, R.B., Chinnaiyan, A.M., Feng, F.Y., RNA biomarkers associated with metastatic progression in prostate cancer: a multi-institutional high-throughput analysis of SChLAP1. Lancet Oncology 15 (Dec. 2014), 1469–1480, 10.1016/S1470-2045(14)71113-1.
-
(2014)
Lancet Oncology
, vol.15
, pp. 1469-1480
-
-
Prensner, J.R.1
Zhao, S.2
Erho, N.3
Schipper, M.4
Iyer, M.K.5
Dhanasekaran, S.M.6
Magi-Galluzzi, C.7
Mehra, R.8
Sahu, A.9
Siddiqui, J.10
Davicioni, E.11
Den, R.B.12
Dicker, A.P.13
Karnes, R.J.14
Wei, J.T.15
Klein, E.A.16
Jenkins, R.B.17
Chinnaiyan, A.M.18
Feng, F.Y.19
-
21
-
-
79961222799
-
Urine TMPRSS2:ERG fusion transcript stratifies prostate cancer risk in men with elevated serum PSA
-
Tomlins, S.A., Aubin, S.M., Siddiqui, J., Lonigro, R.J., Sefton-Miller, L., Miick, S., Williamsen, S., Hodge, P., Meinke, J., Blase, A., et al. Urine TMPRSS2:ERG fusion transcript stratifies prostate cancer risk in men with elevated serum PSA. Sci Transl Med, 3, 2011, 94ra72.
-
(2011)
Sci Transl Med
, vol.3
, pp. 94ra72
-
-
Tomlins, S.A.1
Aubin, S.M.2
Siddiqui, J.3
Lonigro, R.J.4
Sefton-Miller, L.5
Miick, S.6
Williamsen, S.7
Hodge, P.8
Meinke, J.9
Blase, A.10
-
22
-
-
34247363715
-
Comprehensive assessment of TMPRSS2 and ETS family gene aberrations in clinically localized prostate cancer
-
Mehra, R., Tomlins, S.A., Shen, R., Nadeem, O., Wang, L., Wei, J.T., Pienta, K.J., Ghosh, D., Rubin, M.A., Chinnaiyan, A.M., et al. Comprehensive assessment of TMPRSS2 and ETS family gene aberrations in clinically localized prostate cancer. Mod Pathol 20 (2007), 538–544.
-
(2007)
Mod Pathol
, vol.20
, pp. 538-544
-
-
Mehra, R.1
Tomlins, S.A.2
Shen, R.3
Nadeem, O.4
Wang, L.5
Wei, J.T.6
Pienta, K.J.7
Ghosh, D.8
Rubin, M.A.9
Chinnaiyan, A.M.10
-
23
-
-
84859154379
-
Beyond PSA: the next generation of prostate cancer biomarkers
-
Prensner, J.R., Rubin, M.A., Wei, J.T., Chinnaiyan, A.M., Beyond PSA: the next generation of prostate cancer biomarkers. Sci Transl Med, 4, 2012, 127rv123.
-
(2012)
Sci Transl Med
, vol.4
, pp. 127rv123
-
-
Prensner, J.R.1
Rubin, M.A.2
Wei, J.T.3
Chinnaiyan, A.M.4
-
24
-
-
41749088455
-
PCA3 molecular urine assay correlates with prostate cancer tumor volume: implication in selecting candidates for active surveillance
-
[discussion 1809–1810]
-
Nakanishi, H., Groskopf, J., Fritsche, H.A., Bhadkamkar, V., Blase, A., Kumar, S.V., Davis, J.W., Troncoso, P., Rittenhouse, H., Babaian, R.J., PCA3 molecular urine assay correlates with prostate cancer tumor volume: implication in selecting candidates for active surveillance. J Urol 179 (2008), 1804–1809 [discussion 1809–1810].
-
(2008)
J Urol
, vol.179
, pp. 1804-1809
-
-
Nakanishi, H.1
Groskopf, J.2
Fritsche, H.A.3
Bhadkamkar, V.4
Blase, A.5
Kumar, S.V.6
Davis, J.W.7
Troncoso, P.8
Rittenhouse, H.9
Babaian, R.J.10
-
25
-
-
53449088140
-
PCA3 score before radical prostatectomy predicts extracapsular extension and tumor volume
-
[discussion 1978-1979]
-
Whitman, E.J., Groskopf, J., Ali, A., Chen, Y., Blase, A., Furusato, B., Petrovics, G., Ibrahim, M., Elsamanoudi, S., Cullen, J., et al. PCA3 score before radical prostatectomy predicts extracapsular extension and tumor volume. J Urol 180 (2008), 1975–1978 [discussion 1978-1979].
-
(2008)
J Urol
, vol.180
, pp. 1975-1978
-
-
Whitman, E.J.1
Groskopf, J.2
Ali, A.3
Chen, Y.4
Blase, A.5
Furusato, B.6
Petrovics, G.7
Ibrahim, M.8
Elsamanoudi, S.9
Cullen, J.10
-
26
-
-
77957845752
-
PCA3 molecular urine test for predicting repeat prostate biopsy outcome in populations at risk: validation in the placebo arm of the dutasteride REDUCE trial
-
Aubin, S.M., Reid, J., Sarno, M.J., Blase, A., Aussie, J., Rittenhouse, H., Rittmaster, R., Andriole, G.L., Groskopf, J., PCA3 molecular urine test for predicting repeat prostate biopsy outcome in populations at risk: validation in the placebo arm of the dutasteride REDUCE trial. J Urol 184 (2010), 1947–1952.
-
(2010)
J Urol
, vol.184
, pp. 1947-1952
-
-
Aubin, S.M.1
Reid, J.2
Sarno, M.J.3
Blase, A.4
Aussie, J.5
Rittenhouse, H.6
Rittmaster, R.7
Andriole, G.L.8
Groskopf, J.9
-
27
-
-
80555123103
-
The CAPRA-S score: a straightforward tool for improved prediction of outcomes after radical prostatectomy
-
Cooperberg, M.R., Hilton, J.F., Carroll, P.R., The CAPRA-S score: a straightforward tool for improved prediction of outcomes after radical prostatectomy. Cancer 117 (2011), 5039–5046.
-
(2011)
Cancer
, vol.117
, pp. 5039-5046
-
-
Cooperberg, M.R.1
Hilton, J.F.2
Carroll, P.R.3
-
28
-
-
84899520647
-
Multi-institutional validation of the CAPRA-S score to predict disease recurrence and mortality after radical prostatectomy
-
Punnen, S., Freedland, S.J., Presti, J.C. Jr., Aronson, W.J., Terris, M.K., Kane, C.J., Amling, C.L., Carroll, P.R., Cooperberg, M.R., Multi-institutional validation of the CAPRA-S score to predict disease recurrence and mortality after radical prostatectomy. Eur Urol 65 (2014), 1171–1177.
-
(2014)
Eur Urol
, vol.65
, pp. 1171-1177
-
-
Punnen, S.1
Freedland, S.J.2
Presti, J.C.3
Aronson, W.J.4
Terris, M.K.5
Kane, C.J.6
Amling, C.L.7
Carroll, P.R.8
Cooperberg, M.R.9
|