Draft genome sequence of the first isolate of extensively drug-resistant Mycobacterium tuberculosis in New Zealand

Genome Announcements

Volumn 2, Issue 3, 2014, Pages

  O'Toole, Ronan F ^a   Johari, Bushra M ^a   Aogáin, Micheál Mac ^a   Rogers, Thomas R ^a   Bower, James E ^b   Basu, Indira ^b   Freeman, Joshua T ^b,c  

^a TRINITY COLLEGE DUBLIN   (Ireland)

^b AUCKLAND CITY HOSPITAL   (New Zealand)

^c UNIVERSITY OF AUCKLAND   (New Zealand)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84999156679     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00319-14     Document Type: Article

References (9)

1. World Health Organization. 2013. Global tuberculosis report 2013. World Health Organization, Geneva, Switzerland. http://apps.who.int/iris /bitstream/10665/91355/1/9789241564656_eng.pdf?ua=1.
2. CDC. 2006. Revised definition of extensively drug-resistant tuberculosis. MMWR Morb. Mortal. Wkly. Rep. 55:1176.
3. Ioerger TR, Koo S, No EG, Chen X, Larsen MH, Jacobs WR, Jr, Pillay M, Sturm AW, Sacchettini JC. 2009. Genome analysis of multi-and extensively drug-resistant tuberculosis from KwaZulu-Natal, South Africa. PLoS One 4:e7778. http://dx.doi.org/10.1371/journal.pone.0007778.
4. Köser CU, Bryant JM, Becq J, Török ME, Ellington MJ, Marti-Renom MA, Carmichael AJ, Parkhill J, Smith GP, Peacock SJ. 2013. Wholegenome sequencing for rapid susceptibility testing of M. tuberculosis. N. Engl. J. Med. 369:290-292. http://dx.doi.org/10.1056/NEJMc1215305.
5. Goh TL, Towns CR, Jones KL, Freeman JT, Wong CS. 2011. Extensively drug-resistant tuberculosis: New Zealand's first case and the challenges of management in a low-prevalence country. Med. J. Aust. 194: 602-604.
6. Yen S, Bower JE, Freeman JT, Basu I, O'Toole RF. 2013. Phylogenetic lineages of tuberculosis isolates in New Zealand and their association with patient demographics. Int. J. Tuberc. Lung Dis. 17:892-897. http://dx.doi.org/10.5588/ijtld.12.0795.
7. Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760. http://dx.doi.org/10.1093/bioinformatics/btp324.
8. Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25:2078-2079. http://dx.doi.org/10.1093/bioinformatics/btp352.
9. Rodwell TC, Valafar F, Douglas J, Qian L, Garfein RS, Chawla A, Torres J, Zadorozhny V, Kim MS, Hoshide M, Catanzaro D, Jackson L, Lin G, Desmond E, Rodrigues C, Eisenach K, Victor TC, Ismail N, Crudu V, Gler MT, Catanzaro A. 2014. Predicting extensively drug-Resistant mycobacterium tuberculosis phenotypes with genetic mutations. J. Clin. Microbiol. 52:781-789. http://dx.doi.org/10.1128/JCM.02701-13.