Genome sequences of three hpAfrica2 strains of Helicobacter pylori

Genome Announcements

Volumn 1, Issue 5, 2013, Pages

  Duncan, Stacy S ^a   Bertoli, M Teresita ^b   Kersulyte, Dangeruta ^b   Valk, Pieter L ^a   Tamma, Sravya ^b   Segal, Issy ^c   McClain, Mark S ^a   Cover, Timothy L ^a,d   Berg, Douglas E ^b,e  

^a VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c UNIVERSITY OF THE WITWATERSRAND   (South Africa)

^d VETERANS AFFAIRS MEDICAL CENTER   (United States)

^e UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84999040320     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.e00729-13     Document Type: Article

References (9)

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2. Falush D, Wirth T, Linz B, Pritchard JK, Stephens M, Kidd M, Blaser MJ, Graham DY, Vacher S, Perez-Perez GI, Yamaoka Y, Mégraud F, Otto K, Reichard U, Katzowitsch E, Wang X, Achtman M, Suerbaum S. 2003. Traces of human migrations in Helicobacter pylori populations. Science 299:1582-1585.
3. Linz B, Balloux F, Moodley Y, Manica A, Liu H, Roumagnac P, Falush D, Stamer C, Prugnolle F, van der Merwe SW, Yamaoka Y, Graham DY, Perez-Trallero E, Wadstrom T, Suerbaum S, Achtman M. 2007. An African origin for the intimate association between humans and Helicobacter pylori. Nature 445:915-918.
4. Moodley Y, Linz B, Bond RP, Nieuwoudt M, Soodyall H, Schlebusch CM, Bernhöft S, Hale J, Suerbaum S, Mugisha L, van der Merwe SW, Achtman M. 2012. Age of the association between Helicobacter pylori and man. PLOS Pathog. 8:e1002693. doi:10.1371/journal.ppat.1002693.
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6. Galens K, Orvis J, Daugherty S, Creasy HH, Angiuoli S, White O, Wortman J, Mahurkar A, Giglio MG. 2011. The IGS standard operating procedure for automated prokaryotic annotation. Stand. Genomic Sci. 4:244-251.
7. Yao J, Lin H, Doddapaneni H, Civerolo EL. 2007. nWayComp: a genomewide sequence comparison tool for multiple strains/species of phylogenetically related microorganisms. In Silico Biol. 7:195-200.
8. Darling AE, Mau B, Perna NT. 2010. progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 5:e11147. doi:10.1371/journal.pone.0011147.
9. Suerbaum S, Smith JM, Bapumia K, Morelli G, Smith NH, Kunstmann E, Dyrek I, Achtman M. 1998. Free recombination within Helicobacter pylori. Proc. Natl. Acad. Sci. U. S. A. 95:12619-12624.