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Volumn 7, Issue 2, 2007, Pages 195-200

nWayComp: A genome-wide sequence comparison tool for multiple strains/ species of phylogenetically related microorganisms

Author keywords

Homology; INDEL; Phylip; Primer; Sequence comparison; SNP; Unique

Indexed keywords

BACTERIAL DNA; DNA 16S;

EID: 34548318814     PISSN: 13866338     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (15)

References (12)
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    • Genome-based PCR primers for specific and sensitive detection and quantification of Xylella fastidiosa
    • Francis, M., Lin, H., Cabrera-La Rosa, J., Doddapaneni, H. and Civerolo, E. L. (2006). Genome-based PCR primers for specific and sensitive detection and quantification of Xylella fastidiosa. Eur. J. Plant Pathol. 115, 203-213.
    • (2006) Eur. J. Plant Pathol , vol.115 , pp. 203-213
    • Francis, M.1    Lin, H.2    Cabrera-La Rosa, J.3    Doddapaneni, H.4    Civerolo, E.L.5
  • 4
    • 33749136401 scopus 로고    scopus 로고
    • Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa
    • Doddapaneni, H., Yao, J., Lin, H., Walker, M. A. and Civerolo, E. L. (2006). Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa. BMC Genomics 7, 225.
    • (2006) BMC Genomics , vol.7 , pp. 225
    • Doddapaneni, H.1    Yao, J.2    Lin, H.3    Walker, M.A.4    Civerolo, E.L.5
  • 6
    • 0023984847 scopus 로고
    • Optimal alignments in linear space
    • Myers, E. W. and Miller, W. (1988). Optimal alignments in linear space. Comput. Appl. Biosci. 4, 11-17.
    • (1988) Comput. Appl. Biosci , vol.4 , pp. 11-17
    • Myers, E.W.1    Miller, W.2
  • 7
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G. and Gibson, T. J. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4690.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4690
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 8
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen, S. and Skaletsky, H. (2000). Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 132, 365-386.
    • (2000) Methods Mol. Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 9
    • 34548314956 scopus 로고    scopus 로고
    • Felsenstein, J, 1989, PHYLIP, Phylogeny Inference Package Version 3.2, Cladistics 5, 164-166
    • Felsenstein, J. (1989). PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 5, 164-166.
  • 10
    • 0027998116 scopus 로고
    • Bacterial phylogeny based on 16S and 23S rRNA sequence analysis
    • Ludwig, W. and Schleifer, K. H. (1994). Bacterial phylogeny based on 16S and 23S rRNA sequence analysis. FEMS Microbiol. Rev. 15, 155-173.
    • (1994) FEMS Microbiol. Rev , vol.15 , pp. 155-173
    • Ludwig, W.1    Schleifer, K.H.2
  • 12
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    • Genomic analysis of the histidine kinase family in bacteria and archaea
    • Kim, D.-J. and Forst, S. (2001). Genomic analysis of the histidine kinase family in bacteria and archaea. Microbiology 147, 1197-1212.
    • (2001) Microbiology , vol.147 , pp. 1197-1212
    • Kim, D.-J.1    Forst, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.