Complete genome sequence of the thermophilic polychlorinated biphenyl degrader Geobacillus sp. strain JF8 (NBRC 109937)

Genome Announcements

Volumn 2, Issue 1, 2014, Pages

  Shintani, Masaki ^a   Ohtsubo, Yoshiyuki ^b   Fukuda, Kohei ^a   Hosoyama, Akira ^c   Ohji, Shoko ^c   Yamazoe, Atsushi ^c   Fujita, Nobuyuki ^c   Nagata, Yuji ^b   Tsuda, Masataka ^b   Hatta, Takashi ^d   Kimbara, Kazuhide ^a  

^a SHIZUOKA UNIVERSITY   (Japan)

^b TOHOKU UNIVERSITY   (Japan)

^c NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

^d OKAYAMA UNIVERSITY OF SCIENCE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84998953580     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.e01213-13     Document Type: Article

References (10)

1. Shimura M, Mukerjee-Dhar G, Kimbara K, Nagato H, Kiyohara H, Hatta T. 1999. Isolation and characterization of a thermophilic Bacillus sp. JF8 capable of degrading polychlorinated biphenyls and naphthalene. FEMS Microbiol. Lett. 178:87-93. http://dx.doi.org/10.1111/j.1574-6968.1999.tb13763.x.
2. Mukerjee-Dhar G, Shimura M, Miyazawa D, Kimbara K, Hatta T. 2005. bph genes of the thermophilic PCB degrader, Bacillus sp. JF8: characterization of the divergent ring-hydroxylating dioxygenase and hydrolase genes upstream of the Mn-dependent BphC. Microbiology 151: 4139-4151. http://dx.doi.org/10.1099/mic.0.28437-0.
3. Miyazawa D, Mukerjee-Dhar G, Shimura M, Hatta T, Kimbara K. 2004. Genes for Mn(II)-dependent NahC and Fe(II)-dependent NahH located in close proximity in the thermophilic naphthalene and PCB degrader, Bacillus sp. JF8: cloning and characterization. Microbiology 150: 993-1004. http://dx.doi.org/10.1099/mic.0.26858-0.
4. Wijaya E, Frith MC, Suzuki Y, Horton P. 2009. Recount: expectation maximization based error correction tool for next generation sequencing data. Genome Inform. 23:189-201. http://dx.doi.org/10.1142/978184816 5632_0018.
5. Ohtsubo Y, Maruyama F, Mitsui H, Nagata Y, Tsuda M. 2012. Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated-biphenyl degrader. J. Bacteriol. 194:6970-6971. http://dx.doi.org/10.1128/JB.01848-12.
6. Ohtsubo Y, Ikeda-Ohtsubo W, Nagata Y, Tsuda M. 2008. GenomeMatcher: a graphical user interface for DNA sequence comparison. BMC Bioinformatics 9:376. http://dx.doi.org/10.1186/1471-2105-9-376.
7. Chain PS, Denef VJ, Konstantinidis KT, Vergez LM, Agulló L, Reyes VL, Hauser L, Córdova M, Gómez L, González M, Land M, Lao V, Larimer F, LiPuma JJ, Mahenthiralingam E, Malfatti SA, Marx CJ, Parnell JJ, Ramette A, Richardson P, Seeger M, Smith D, Spilker T, Sul WJ, Tsoi TV, Ulrich LE, Zhulin IB, Tiedje JM. 2006. Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proc. Natl. Acad. Sci. U. S. A. 103:15280-15287. http://dx.doi.org/10.1073/pnas.0606924103.
8. Triscari-Barberi T, Simone D, Calabrese FM, Attimonelli M, Hahn KR, Amoako KK, Turner RJ, Fedi S, Zannoni D. 2012. Genome sequence of the polychlorinated-biphenyl degrader Pseudomonas pseudoalcaligenes KF707. J. Bacteriol. 194:4426-4427. http://dx.doi.org/10.1128/JB.00722-12.
9. McLeod MP, Warren RL, Hsiao WW, Araki N, Myhre M, Fernandes C, Miyazawa D, Wong W, Lillquist AL, Wang D, Dosanjh M, Hara H, Petrescu A, Morin RD, Yang G, Stott JM, Schein JE, Shin H, Smailus D, Siddiqui AS, Marra MA, Jones SJ, Holt R, Brinkman FS, Miyauchi K, Fukuda M, Davies JE, Mohn WW, Eltis LD. 2006. The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse. Proc. Natl. Acad. Sci. U. S. A. 103:15582-15587. http://dx.doi.org/10.107 3/pnas.0607048103.
10. Yang X, Xue R, Shen C, Li S, Gao C, Wang Q, Zhao X. 2011. Genome sequence of Rhodococcus sp. strain R04, a polychlorinated-biphenyl biodegrader. J. Bacteriol. 193:5032-5033. http://dx.doi.org/10.1128/JB.0563 5-11.