Draft genome sequence of the antitrypanosomally active sponge-associated bacterium Actinokineospora sp. strain EG49

Genome Announcements

Volumn 2, Issue 2, 2014, Pages

  Harjes, Janno ^a   Ryu, Taewoo ^b   Abdelmohsen, Usama Ramadan ^a,c   Moitinho Silva, Lucas ^a   Horn, Hannes ^a   Ravasi, Timothy ^b   Hentschel, Ute ^a  

^a UNIVERSITY OF WÜRZBURG   (Germany)

^b KING ABDULLAH UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Saudi Arabia)

^c Minia University   (Egypt)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84998717731     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.00160-14     Document Type: Article

References (11)

1. Abdelmohsen UR, Pimentel-Elardo SM, Hanora A, Radwan M, Abou-El-Ela SH, Ahmed S, Hentschel U. 2010. Isolation, phylogenetic analysis and anti-infective activity screening of marine sponge-associated actinomycetes. Mar. Drugs 8:399-412. http://dx.doi.org/10.3390/md8030399.
2. Intra B, Matsumoto A, Inahashi Y, Omura S, Takahashi Y, Panbangred W. 2013. Actinokineospora bangkokensis sp. nov., isolated from rhizospheric soil. Int. J. Syst. Evol. Microbiol. 63:2655-2660. http://dx.doi.org/10.1099/ijs.0.047928-0.
3. Lisdiyanti P, Otoguro M, Ratnakomala S, Lestari Y, Hastuti RD, Triana E, Katsuhiko A, Widyastuti Y. 2010. Actinokineospora baliensis sp. nov., Actinokineospora cibodasensis sp. nov. and Actinokineospora cianjurensis sp. nov., isolated from soil and plant litter. Int. J. Syst. Evol. Microbiol. 60:2331-2335. http://dx.doi.org/10.1099/ijs.0.013276-0.
4. Tang X, Zhou Y, Zhang J, Ming H, Nie GX, Yang LL, Tang SK, Li WJ. 2012 Actinokineospora soli sp. nov., a thermotolerant actinomycete isolated from soil, and emended description of the genus Actinokineospora. Int. J. Syst. Evol. Microbiol. 62:1845-1849. http://dx.doi.org/10.1099/ijs. 0.035832-0.
5. Abdelmohsen UR, Cheng C, Viegelmann C, Zhang T, Grkovic T, Ahmed S, Quinn R, Hentschel U, Edrada-Ebel R. Metabolomic strategies in dereplication for targeted cultivation and isolation of new bioactive secondary metabolites from a marine sponge associated-bacterium. Mar. Drugs, in press.
6. Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I. 2009. ABySS: a parallel assembler for short read sequence data. Genome Res. 19:1117-1123. http://dx.doi.org/10.1101/gr.089532.108.
7. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75. http://dx.doi.org/10.1186/1471-2164-9-75.
8. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964. http://dx.doi.org/10.1093/nar/25.5.0955.
9. Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108. http://dx.doi.org/10.1093/nar/gkm160.
10. Blin K, Medema MH, Kazempour D, Fischbach MA, Breitling R, Takano E, Weber T. 2013. antiSMASH 2.0-a versatile platform for genome mining of secondary metabolite producers. Nucleic Acids Res. 41:W204-W212. http://dx.doi.org/10.1093/nar/gkt449.
11. Ziemert N, Podell S, Penn K, Badger JH, Allen E, Jensen PR. 2012. The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity. PLoS One 7:e34064. http://dx.doi.org/10.1371/journal.pone.0034064.