Draft genome sequence of Enterococcus faecalis strain PF3, isolated from Adélie penguin feces from Antarctica

Genome Announcements

Volumn 2, Issue 1, 2014, Pages

  Spence, Robert J ^a   Pavasovic, Ana ^a   Smith, James J ^a   Prentis, Peter J ^a  

^a QUEENSLAND UNIVERSITY OF TECHNOLOGY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84998636405     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.e01209-13     Document Type: Article

References (10)

1. Franz CM, Huch M, Abriouel H, Holzapfel W, Gálvez A. 2011. Enterococci as probiotics and their implications in food safety. Int. J. Food Microbiol. 151:125-140. http://dx.doi.org/10.1016/j.ijfoodmicro.2011.08.014.
2. Paulsen IT, Banerjei L, Myers GS, Nelson KE, Seshadri R, Read TD, Fouts DE, Eisen JA, Gill SR, Heidelberg JF, Tettelin H, Dodson RJ, Umayam L, Brinkac L, Beanan M, Daugherty S, DeBoy RT, Durkin S, Kolonay J, Madupu R, Nelson W, Vamathevan J, Tran B, Upton J, Hansen T, Shetty J, Khouri H, Utterback T, Radune D, Ketchum KA, Dougherty BA, Fraser CM. 2003. Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis. Science 299:2071-2074. http://dx.doi.org/10.1126/science.1080613.
3. Devriese L, Baele M, Butaye P. 2006. The genus Enterococcus, p 163-174. In Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E (ed), The prokaryotes: a handbook on the biology of bacteria, vol 4. Bacteria: Firmicutes, Cyanobacteria. Springer-Verlag New York, Inc., New York, NY.
4. Delcher AL, Bratke KA, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673-679. http://dx.doi.org/10.1093/bioinformatics/btm009.
5. Chaudhuri RR, Loman NJ, Snyder LAS, Bailey CM, Stekel DJ, Pallen MJ. 2008. xBASE2: a comprehensive resource for comparative bacterial genomics. Nucleic Acids Res. 36(Database issue):543-546. http://dx.doi.org/10.1093/nar/gkm928.
6. Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108. http://dx.doi.org/10.1093/nar/gkm160.
7. Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL. 2004. Versatile and open software for comparing large genomes. Genome Biol. 5:R12. http://dx.doi.org/10.1186/gb-2004-5-2-r12.
8. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402. http://dx.doi.org/10.1093/nar/25.17.3389.
9. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964. http://dx.doi.org/10.1093/nar/25.5.0955.
10. Darling AE, Mau B, Perna NT. 2010. progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 5:e11147. http://dx.doi.org/10.1371/journal.pone.0011147.