Draft genome sequences of Helicobacter pylori strains isolated from regions of low and high gastric cancer risk in Colombia

Genome Announcements

Volumn 1, Issue 5, 2013, Pages

  Sheh, Alexander ^a   Piazuelo, M Blanca ^a   Wilson, Keith T ^b,c   Correa, Pelayo ^b   Fox, James G ^a,d  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c VETERANS AFFAIRS MEDICAL CENTER   (United States)

^d Massachusetts Institute of Technology Cambridge   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84998537531     PISSN: None     EISSN: 21698287     Source Type: Journal    
DOI: 10.1128/genomeA.e00736-13     Document Type: Article

References (6)

1. Kusters JG, van Vliet AH, Kuipers EJ. 2006. Pathogenesis of Helicobacter pylori infection. Clin. Microbiol. Rev. 19:449-490.
2. Fox JG, Wang TC. 2007. Inflammation, atrophy, and gastric cancer. J. Clin. Invest. 117:60-69.
3. de Sablet T, Piazuelo MB, Shaffer CL, Schneider BG, Asim M, Chaturvedi R, Bravo LE, Sicinschi LA, Delgado AG, Mera RM, Israel DA, Romero-Gallo J, Peek RM, Jr, Cover TL, Correa P, Wilson KT. 2011. Phylogeographic origin of Helicobacter pylori is a determinant of gastric cancer risk. Gut 60:1189-1195.
4. Sheh A, Chaturvedi R, Merrell DS, Correa P, Wilson KT, Fox JG. 2013. Phylogeographic origin of Helicobacter pylori determines host-adaptive responses upon coculture with gastric epithelial cells. Infect. Immun. 81: 2468-2477.
5. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
6. Klimke W, Agarwala R, Badretdin A, Chetvernin S, Ciufo S, Fedorov B, Kiryutin B, O'Neill K, Resch W, Resenchuk S, Schafer S, Tolstoy I, Tatusova T. 2009. The National Center for Biotechnology Information's Protein Clusters Database. Nucleic Acids Res. 37:D216-D223.